SLC3A1 (solute carrier family 3 member 1)

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Gene: SLC3A1 (solute carrier family 3 member 1) Sus scrofa

Analyze

Symbol:

SLC3A1

Name:

solute carrier family 3 member 1

RGD ID:

14054467

Description:

ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN amino acid transport (ortholog); aspartate transmembrane transport (ortholog); gene expression (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH congenital myasthenic syndrome 22 (ortholog); cystinuria (ortholog); hypotonia-cystinuria syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); integral component of plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

neutral and basic amino acid transport protein rBAT; solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	96,157,380 - 96,215,454 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	96,157,387 - 96,201,057 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	102,312,692 - 102,371,561 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital myasthenic syndrome 22 (ISO)

cystinuria (ISO)

hypotonia-cystinuria syndrome (ISO)

nephrocalcinosis (ISO)

primary ovarian insufficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amino acid transport (IBA,ISO)

aspartate transmembrane transport (IEA,ISO)

carbohydrate metabolic process (IEA)

gene expression (IEA,ISO)

L-cystine transport (IEA,ISO)

L-glutamate transmembrane transport (IEA,ISO)

Cellular Component

apical plasma membrane (IEA,ISO)

brush border membrane (IEA,ISO)

integral component of membrane (IEA)

integral component of plasma membrane (ISO)

plasma membrane (ISO)

vacuolar membrane (ISO)

Molecular Function

catalytic activity (IEA)

protein binding (ISO)

protein heterodimerization activity (IEA,ISO)

protein-containing complex binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

amiloride pharmacodynamics pathway (ISO)

bendroflumethiazide pharmacodynamics pathway (ISO)

bumetanide pharmacodynamics pathway (ISO)

chlorothiazide pharmacodynamics pathway (ISO)

chlorthalidone pharmacodynamics pathway (ISO)

cystinuria pathway (ISO)

eplerenone pharmacodynamics pathway (ISO)

etacrynic acid pharmacodynamics pathway (ISO)

furosemide pharmacodynamics pathway (ISO)

Hartnup disease pathway (ISO)

hydrochlorothiazide pharmacodynamics pathway (ISO)

hydroflumethiazide pharmacodynamics pathway (ISO)

iminoglycinuria pathway (ISO)

lysinuric protein intolerance pathway (ISO)

metolazone pharmacodynamics pathway (ISO)

spironolactone pharmacodynamics pathway (ISO)

torasemide pharmacodynamics pathway (ISO)

triamterene pharmacodynamics pathway (ISO)

trichlormethiazide pharmacodynamics pathway (ISO)

References

Genomics

Comparative Map Data

SLC3A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	96,157,380 - 96,215,454 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	96,157,387 - 96,201,057 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	102,312,692 - 102,371,561 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC3A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	44,275,458 - 44,321,494 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	44,275,464 - 44,321,494 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	44,502,619 - 44,548,633 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	44,356,103 - 44,401,448 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	44,414,249 - 44,459,588	NCBI
Celera	2	44,341,552 - 44,386,916 (+)	NCBI
Cytogenetic Map	2	p21	NCBI
HuRef	2	44,239,242 - 44,284,624 (+)	NCBI		HuRef
CHM1_1	2	44,430,299 - 44,475,664 (+)	NCBI		CHM1_1

Slc3a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	85,335,775 - 85,371,669 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	17	85,335,804 - 85,371,664 (+)	Ensembl
GRCm38	17	85,028,347 - 85,064,241 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	85,028,376 - 85,064,236 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	85,427,687 - 85,463,581 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	17	84,936,718 - 84,983,241 (+)	NCBI			mm8
Celera	17	89,390,574 - 89,425,929 (+)	NCBI		Celera
Cytogenetic Map	17	E4	NCBI
cM Map	17	55.17	NCBI

Slc3a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	9,608,169 - 9,641,881 (-)	NCBI
Rnor_6.0 Ensembl	6	8,284,878 - 8,318,674 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	8,284,937 - 8,318,649 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	8,217,549 - 8,251,133 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	8,385,186 - 8,419,465 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	8,385,185 - 8,419,461 (+)	NCBI
Celera	6	9,332,403 - 9,366,072 (-)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

Slc3a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	11,381,441 - 11,418,025 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955441	11,381,390 - 11,418,193 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC3A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	45,307,885 - 45,356,055 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	45,307,885 - 45,355,386 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	44,371,328 - 44,419,611 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SLC3A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	10	46,685,137 - 46,737,147 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	10	46,690,555 - 46,737,417 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Slc3a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936508	7,672,274 - 7,703,962 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC3A1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	62,924,906 - 62,971,268 (-)	NCBI
ChlSab1.1 Ensembl	14	62,925,443 - 62,971,252 (-)	Ensembl

Slc3a1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	25,762,064 - 25,802,407 (+)	NCBI

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	4						2	1
Low	6	1	3	4	2	23		2	2
Below cutoff		3		1					1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001123042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU855728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU942401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU587017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01034408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSSCT00000009251 ⟹ ENSSSCP00000009017

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	96,157,380 - 96,215,454 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000071035 ⟹ ENSSSCP00000067975

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	96,157,380 - 96,215,454 (-)	Ensembl

RefSeq Acc Id:

NM_001123042 ⟹ NP_001116514

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	96,157,387 - 96,201,057 (-)	NCBI

Sequence:

show sequence

ACAGCTGAGGTAACAGAGGCTTAGAGAATATTTTGTCTAAGATCAAGCAGAGAGCAAGTGGTGG
AGGCAGGCTTGCATCTCACTTCCTTTGACTTAAAATTTCACCCATGAAATTGTATCAAGATCCT
CTTGCTTTTGCATTTGTAGGAAGAGACCTACAAAACAAAAAGTAAAGAAAAGGAGGTTTTCACT
TGGAAAATTTGGTGTTTCTTTTTTGCACAACCAGGAAGGCGCTCTGCTGGGATAAGATTGTGAG
ACATGGCTGAAGATAAAAGCAAGAGAGGCTCCATTGGAATGAGTCTGAAGGGCGGCCAGACAAA
CAATGGGTTTGTCCAAAATGAAGACATCCGGGAGAGGGACCCAAACCCAGAGGACCGGCAGCAG
CACAATGCCGTGGACATGCTTGGCCCTGGGGATCCGGACTTGAAGGATATCCGGCCCTACGCGG
GGATGCCCAAGGAGGTGCTGTTCCAGTTCTCAGGCCAGGCACGCTACCGGGTGCCCCGGGAAGT
CCTCTTCTGGCTCACAGTGGCTTCTGTGCTTGCGCTCATCGCAGCCACCATCTCCATCATCGCC
ATCTCTCCAAAGTGCCTGGACTGGTGGCAGGCAGGGCCCATGTACCAGATCTACCCAAGGTCTT
TCAAGGACAGCGACAAAGACGGGAACGGAGATCTGAAAGGTATTCAAGATAAGCTGGATTACCT
CACAACTTTAAATATAAAAACTGTTTGGATTACTTCATTTTATAAGTCATCCCTTAAAGATTTC
CGGTATGGTGTTGAAGATTTCCGAGAAATAGATCCCATTTTTGGAACAATGAAAGATTTTGAGA
ATCTGGTTGCAGCCATACATGATAAAGGTTTGAAATTAATAATCGATTTCATACCAAACCACAC
CAGTGATAAACATGCCTGGTTTCAATTGAGTCGGACCCGGACAGGGAAATATACTGATTATTAT
ATCTGGCATGACTGTACCCAGGAAGATGGTATAACTATACCACCCAACAACTGGTTAAGTGTCT
ATGGAAACTCCAGTTGGCACTTTGATGAAATACGAAACCAATGCTATTTTCACCAGTTTTTGAA
AGAGCAACCTGATTTAAATTTCCGCAATCCTGATGTTCAAGAAGAAATAAAAGAAATCATACAG
TTCTGGCTCTCAAAGGGTGTCGACGGCTTTAGTTTTGATGCTGTTCAGTTTCTCCTAGAAGCAA
AGCATCTGCGAGACGAGACCCAAGTGAATAAGACCCAAATCCCGGCCACGATCACACACTACTC
GGAGCTGTACCACGACTTCACCACCACACAGGTGGGGATGCATGACATTGTCCGCAGCTTCCGG
CAGATGATGGACCAATACAGCAGGGAGCCCGGGAGATACAGGTTTATGGGGACTGAAGCCCAAG
GAGAGAGCATCGCTGGGACCATGATGTACTACGGGTTGCCTTTTATCCAAGAAGCAGATTTTCC
CTTCAACAGTTACTTTGGACAGCTGGACAGTCCTTCTGGGGACAGTGTGGCTGAGGTTATCCTG
TCCTGGATGGAAAACATGCCAGAAGGGAAGTGGCCTAATTGGATGACTTGTGGACCAGATAATG
CCCGGCTGACGTCTCGTCTGGGGGAAGAATATGTCAACGTCATGAACATGCTTATTTTCACACT
GCCTGGCACGCCCATAACTTACTATGGGGAAGAAATAGGAATGAGAAATATTTTAGCCACAAGT
CTCTATGAAACCTATGATGCTGACACCCTTCTTTCAAAGTCACCAATGCAGTGGGACAACAGCT
CAAATGCTGGTTTTTCTGAAGGCAGCCACACGTGGTTACCCACCCGGTCAGACTACCCCACTGT
GAATGGTGATGTCCAAAAGACCCAGCCCAAATCAGCACTGAAGTTATATCAAGAATTAAGTTTG
CTTCACGCCAATGAACTGCTCCTCAGCAGAGGCTGGTTTTGCTATTTGAGGAATGACAACTACT
CTGTTGTGTACACGAGAGAGCTCAACGGCATAGACAGAGTCTTGCTCATGGTTCTGAATTTTGG
AGAATCATCACTGCTAAATCTAAAGGAAGTGATTTCAAATATTCCCACGAGAGTGAGGATCAGG
TTAAGTACCAATTCTGTCTATACAGGCCGTGAAGTTGATACACACGCCATTTCAGTGGACAGAG
GAGAAGGACTCATCCTTGAATATAACACCAAGAATCTCCTTCATCAGCAAGCAGCTTTCAGAGA
TAGATGTTTCATTTCCAACCGGGCATGCTATTCCAGTGTATTCAACATACTGTACAGCTTGTGT
TAGGCAGCTTTATGAAAGAGATGGAGAGACTGCCACTCCGTTCCACTCTAAGCATTTGTGGTAA
CCTCAGATGCTGCTGCTGGGTGAACTTCATGAACATTCATTAATTCTCAGATATTTCTGTAGCC
TGAATGTAATGCTTTAAGAATGGTTCTCAAATGTGTTTCCAGAATAATAAAATGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001116514	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ACB46191	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001116514 ⟸ NM_001123042

- UniProtKB:

B2D2K8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEDKSKRGSIGMSLKGGQTNNGFVQNEDIRERDPNPEDRQQHNAVDMLGPGDPDLKDIRPYAG
MPKEVLFQFSGQARYRVPREVLFWLTVASVLALIAATISIIAISPKCLDWWQAGPMYQIYPRSF
KDSDKDGNGDLKGIQDKLDYLTTLNIKTVWITSFYKSSLKDFRYGVEDFREIDPIFGTMKDFEN
LVAAIHDKGLKLIIDFIPNHTSDKHAWFQLSRTRTGKYTDYYIWHDCTQEDGITIPPNNWLSVY
GNSSWHFDEIRNQCYFHQFLKEQPDLNFRNPDVQEEIKEIIQFWLSKGVDGFSFDAVQFLLEAK
HLRDETQVNKTQIPATITHYSELYHDFTTTQVGMHDIVRSFRQMMDQYSREPGRYRFMGTEAQG
ESIAGTMMYYGLPFIQEADFPFNSYFGQLDSPSGDSVAEVILSWMENMPEGKWPNWMTCGPDNA
RLTSRLGEEYVNVMNMLIFTLPGTPITYYGEEIGMRNILATSLYETYDADTLLSKSPMQWDNSS
NAGFSEGSHTWLPTRSDYPTVNGDVQKTQPKSALKLYQELSLLHANELLLSRGWFCYLRNDNYS
VVYTRELNGIDRVLLMVLNFGESSLLNLKEVISNIPTRVRIRLSTNSVYTGREVDTHAISVDRG
EGLILEYNTKNLLHQQAAFRDRCFISNRACYSSVFNILYSLC

hide sequence

RefSeq Acc Id:

ENSSSCP00000009017 ⟸ ENSSSCT00000009251

RefSeq Acc Id:

ENSSSCP00000067975 ⟸ ENSSSCT00000071035

Protein Domains

Aamy

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000008449	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00070001668	UniProtKB/TrEMBL
Ensembl Protein	ENSSSCP00000009017	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCP00000067975	UniProtKB/TrEMBL
	ENSSSCP00070002619	UniProtKB/TrEMBL
	ENSSSCP00070002635	UniProtKB/TrEMBL
	ENSSSCP00070002645	UniProtKB/TrEMBL
	ENSSSCP00070002648	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000009251	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCT00000071035	UniProtKB/TrEMBL
	ENSSSCT00070003174	UniProtKB/TrEMBL
	ENSSSCT00070003190	UniProtKB/TrEMBL
	ENSSSCT00070003200	UniProtKB/TrEMBL
	ENSSSCT00070003203	UniProtKB/TrEMBL
InterPro	Glyco_hydro_13_cat_dom	UniProtKB/TrEMBL
	Glycoside_hydrolase_SF	UniProtKB/TrEMBL
KEGG Report	ssc:100144588	UniProtKB/TrEMBL
NCBI Gene	SLC3A1	ENTREZGENE
Pfam	Alpha-amylase	UniProtKB/TrEMBL
SMART	Aamy	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51445	UniProtKB/TrEMBL
UniProt	A0A4X1SJS4_PIG	UniProtKB/TrEMBL
	A0A4X1SJV5_PIG	UniProtKB/TrEMBL
	A0A5G2QSR8_PIG	UniProtKB/TrEMBL
	B2D2K8	ENTREZGENE, UniProtKB/TrEMBL
	F1S5K2_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:93111	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB