SLC3A1 (solute carrier family 3 member 1) - Rat Genome Database
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Gene: SLC3A1 (solute carrier family 3 member 1) Sus scrofa
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Symbol: SLC3A1
Name: solute carrier family 3 member 1
RGD ID: 14054467
Description: ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN amino acid transport (ortholog); aspartate transmembrane transport (ortholog); gene expression (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH congenital myasthenic syndrome 22 (ortholog); cystinuria (ortholog); hypotonia-cystinuria syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); integral component of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: neutral and basic amino acid transport protein rBAT; solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl396,157,380 - 96,215,454 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1396,157,387 - 96,201,057 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23102,312,692 - 102,371,561 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SLC3A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl396,157,380 - 96,215,454 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1396,157,387 - 96,201,057 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23102,312,692 - 102,371,561 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC3A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl244,275,458 - 44,321,494 (+)EnsemblGRCh38hg38GRCh38
GRCh38244,275,464 - 44,321,494 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37244,502,619 - 44,548,633 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36244,356,103 - 44,401,448 (+)NCBINCBI36hg18NCBI36
Build 34244,414,249 - 44,459,588NCBI
Celera244,341,552 - 44,386,916 (+)NCBI
Cytogenetic Map2p21NCBI
HuRef244,239,242 - 44,284,624 (+)NCBIHuRef
CHM1_1244,430,299 - 44,475,664 (+)NCBICHM1_1
Slc3a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391785,335,775 - 85,371,669 (+)NCBIGRCm39mm39
GRCm39 Ensembl1785,335,804 - 85,371,664 (+)Ensembl
GRCm381785,028,347 - 85,064,241 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1785,028,376 - 85,064,236 (+)EnsemblGRCm38mm10GRCm38
MGSCv371785,427,687 - 85,463,581 (+)NCBIGRCm37mm9NCBIm37
MGSCv361784,936,718 - 84,983,241 (+)NCBImm8
Celera1789,390,574 - 89,425,929 (+)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1755.17NCBI
Slc3a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.269,608,169 - 9,641,881 (-)NCBI
Rnor_6.0 Ensembl68,284,878 - 8,318,674 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.068,284,937 - 8,318,649 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.068,217,549 - 8,251,133 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.468,385,186 - 8,419,465 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.168,385,185 - 8,419,461 (+)NCBI
Celera69,332,403 - 9,366,072 (-)NCBICelera
Cytogenetic Map6q12NCBI
Slc3a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544111,381,441 - 11,418,025 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544111,381,390 - 11,418,193 (+)NCBIChiLan1.0ChiLan1.0
SLC3A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A45,307,885 - 45,356,055 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A45,307,885 - 45,355,386 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A44,371,328 - 44,419,611 (+)NCBIMhudiblu_PPA_v0panPan3
SLC3A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1046,685,137 - 46,737,147 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11046,690,555 - 46,737,417 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Slc3a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365087,672,274 - 7,703,962 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC3A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11462,924,906 - 62,971,268 (-)NCBI
ChlSab1.1 Ensembl1462,925,443 - 62,971,252 (-)Ensembl
Slc3a1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473825,762,064 - 25,802,407 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 2 1
Low 6 1 3 4 2 23 2 2
Below cutoff 3 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000009251   ⟹   ENSSSCP00000009017
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl396,157,380 - 96,215,454 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071035   ⟹   ENSSSCP00000067975
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl396,157,380 - 96,215,454 (-)Ensembl
RefSeq Acc Id: NM_001123042   ⟹   NP_001116514
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1396,157,387 - 96,201,057 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001116514 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACB46191 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001116514   ⟸   NM_001123042
- UniProtKB: B2D2K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000009017   ⟸   ENSSSCT00000009251
RefSeq Acc Id: ENSSSCP00000067975   ⟸   ENSSSCT00000071035
Protein Domains
Aamy


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008449 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070001668 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000009017 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000067975 UniProtKB/TrEMBL
  ENSSSCP00070002619 UniProtKB/TrEMBL
  ENSSSCP00070002635 UniProtKB/TrEMBL
  ENSSSCP00070002645 UniProtKB/TrEMBL
  ENSSSCP00070002648 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009251 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000071035 UniProtKB/TrEMBL
  ENSSSCT00070003174 UniProtKB/TrEMBL
  ENSSSCT00070003190 UniProtKB/TrEMBL
  ENSSSCT00070003200 UniProtKB/TrEMBL
  ENSSSCT00070003203 UniProtKB/TrEMBL
InterPro Glyco_hydro_13_cat_dom UniProtKB/TrEMBL
  Glycoside_hydrolase_SF UniProtKB/TrEMBL
KEGG Report ssc:100144588 UniProtKB/TrEMBL
NCBI Gene SLC3A1 ENTREZGENE
Pfam Alpha-amylase UniProtKB/TrEMBL
SMART Aamy UniProtKB/TrEMBL
Superfamily-SCOP SSF51445 UniProtKB/TrEMBL
UniProt A0A4X1SJS4_PIG UniProtKB/TrEMBL
  A0A4X1SJV5_PIG UniProtKB/TrEMBL
  A0A5G2QSR8_PIG UniProtKB/TrEMBL
  B2D2K8 ENTREZGENE, UniProtKB/TrEMBL
  F1S5K2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93111 ENTREZGENE