FZD9 (frizzled class receptor 9) - Rat Genome Database

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Gene: FZD9 (frizzled class receptor 9) Sus scrofa
Analyze
Symbol: FZD9
Name: frizzled class receptor 9
RGD ID: 14054158
Description: ENCODES a protein that exhibits Wnt receptor activity (ortholog); INVOLVED IN B cell differentiation (ortholog); learning or memory (ortholog); neuroblast proliferation (ortholog); PARTICIPATES IN Wnt signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: frizzled family receptor 9; frizzled-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,754,783 - 10,757,147 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,753,294 - 10,762,812 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,454,083 - 10,460,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FZD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,754,783 - 10,757,147 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,753,294 - 10,762,812 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,454,083 - 10,460,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FZD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38773,433,778 - 73,436,120 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl773,433,778 - 73,436,120 (+)EnsemblGRCh38hg38GRCh38
GRCh37772,848,108 - 72,850,450 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,486,045 - 72,488,386 (+)NCBINCBI36Build 36hg18NCBI36
Build 34772,292,963 - 72,295,149NCBI
Celera768,326,020 - 68,328,361 (+)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef768,729,438 - 68,731,779 (+)NCBIHuRef
CHM1_1772,993,577 - 72,995,918 (+)NCBICHM1_1
T2T-CHM13v2.0774,634,272 - 74,636,614 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2772,181,181 - 72,183,522 (+)NCBI
Fzd9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,277,792 - 135,279,901 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5135,277,792 - 135,280,084 (-)EnsemblGRCm39 Ensembl
GRCm385135,248,938 - 135,251,047 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,248,938 - 135,251,230 (-)EnsemblGRCm38mm10GRCm38
MGSCv375135,724,808 - 135,726,917 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365135,533,564 - 135,535,674 (-)NCBIMGSCv36mm8
Celera5132,260,609 - 132,262,718 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.08NCBI
Fzd9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81227,063,640 - 27,065,954 (+)NCBIGRCr8
mRatBN7.21221,427,084 - 21,429,398 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,427,084 - 21,429,398 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,568,651 - 22,570,965 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,180,980 - 23,183,294 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01222,247,456 - 22,249,770 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,473,981 - 24,476,295 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,473,981 - 24,476,295 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,471,284 - 26,473,598 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,581,510 - 22,583,824 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11222,572,254 - 22,574,569 (+)NCBI
Celera1223,189,657 - 23,191,971 (+)NCBICelera
Cytogenetic Map12q12NCBI
Fzd9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,246,324 - 14,247,550 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545614,245,994 - 14,247,551 (-)NCBIChiLan1.0ChiLan1.0
FZD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2691,465,742 - 91,468,899 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17139,730,373 - 139,733,539 (-)NCBINHGRI_mPanPan1
PanPan1.1780,588,167 - 80,590,337 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl780,588,167 - 80,590,337 (+)Ensemblpanpan1.1panPan2
FZD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.166,782,394 - 6,784,565 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl66,782,774 - 6,784,558 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha68,479,582 - 8,481,722 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.066,597,879 - 6,600,019 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl66,598,235 - 6,600,019 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.166,573,034 - 6,575,174 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.066,535,346 - 6,537,484 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.066,698,260 - 6,700,400 (-)NCBIUU_Cfam_GSD_1.0
Fzd9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,326,748 - 131,328,721 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,707,840 - 2,709,498 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365432,707,846 - 2,709,819 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FZD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,621,434 - 9,623,769 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,621,770 - 9,623,545 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660706,849,337 - 6,851,686 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fzd9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474014,323,817 - 14,325,601 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474014,323,445 - 14,325,616 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FZD9
187 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system musculoskeletal system nervous system renal system
High
Medium
Low 1 5
Below cutoff 2 2 1 1 15 1

Sequence


RefSeq Acc Id: ENSSSCT00000024638   ⟹   ENSSSCP00000026672
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl310,754,783 - 10,757,147 (+)Ensembl
RefSeq Acc Id: XM_013995527   ⟹   XP_013850981
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1310,753,294 - 10,762,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013995530   ⟹   XP_013850984
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1310,753,294 - 10,762,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021086316   ⟹   XP_020941975
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1310,753,294 - 10,762,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021086317   ⟹   XP_020941976
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1310,753,294 - 10,762,812 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020941975   ⟸   XM_021086316
- UniProtKB: A0A4X1UNY2 (UniProtKB/TrEMBL),   I3LRD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020941976   ⟸   XM_021086317
- UniProtKB: A0A4X1UNY2 (UniProtKB/TrEMBL),   I3LRD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013850984   ⟸   XM_013995530
- UniProtKB: A0A4X1UNY2 (UniProtKB/TrEMBL),   I3LRD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013850981   ⟸   XM_013995527
- UniProtKB: A0A4X1UNY2 (UniProtKB/TrEMBL),   I3LRD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000026672   ⟸   ENSSSCT00000024638

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023004 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015080001 UniProtKB/TrEMBL
  ENSSSCG00025075963 UniProtKB/TrEMBL
  ENSSSCG00030044194 UniProtKB/TrEMBL
  ENSSSCG00035033932 UniProtKB/TrEMBL
  ENSSSCG00040039385 UniProtKB/TrEMBL
  ENSSSCG00045005942 UniProtKB/TrEMBL
  ENSSSCG00050057874 UniProtKB/TrEMBL
  ENSSSCG00055011103 UniProtKB/TrEMBL
  ENSSSCG00060042524 UniProtKB/TrEMBL
  ENSSSCG00065041686 UniProtKB/TrEMBL
  ENSSSCG00070018316 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024638 ENTREZGENE
  ENSSSCT00000024638.2 UniProtKB/TrEMBL
  ENSSSCT00015108701.1 UniProtKB/TrEMBL
  ENSSSCT00025104936.1 UniProtKB/TrEMBL
  ENSSSCT00030061615.1 UniProtKB/TrEMBL
  ENSSSCT00035044979.1 UniProtKB/TrEMBL
  ENSSSCT00040052635.1 UniProtKB/TrEMBL
  ENSSSCT00045009878.1 UniProtKB/TrEMBL
  ENSSSCT00050078927.1 UniProtKB/TrEMBL
  ENSSSCT00055021761.1 UniProtKB/TrEMBL
  ENSSSCT00060057646.1 UniProtKB/TrEMBL
  ENSSSCT00065057036.1 UniProtKB/TrEMBL
  ENSSSCT00070036140.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.2000.10 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Frizzled/SFRP UniProtKB/TrEMBL
  Frizzled/Smoothened_TM UniProtKB/TrEMBL
  Frizzled_dom UniProtKB/TrEMBL
  Frizzled_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
NCBI Gene FZD9 ENTREZGENE
PANTHER FRIZZLED-9 UniProtKB/TrEMBL
  PTHR11309 UniProtKB/TrEMBL
Pfam Frizzled UniProtKB/TrEMBL
  PF01392 UniProtKB/TrEMBL
PRINTS FRIZZLED UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  PS50038 UniProtKB/TrEMBL
SMART FRI UniProtKB/TrEMBL
  Frizzled UniProtKB/TrEMBL
Superfamily-SCOP SSF63501 UniProtKB/TrEMBL
UniProt A0A4X1UNY2 ENTREZGENE, UniProtKB/TrEMBL
  I3LRD8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88284 ENTREZGENE