RBM12 (RNA binding motif protein 12) - Rat Genome Database

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Gene: RBM12 (RNA binding motif protein 12) Sus scrofa
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Symbol: RBM12
Name: RNA binding motif protein 12
RGD ID: 14053639
Description: ENCODES a protein that exhibits RNA binding (inferred); ASSOCIATED WITH genetic disease (ortholog); psychotic disorder (ortholog); schizophrenia 19 (ortholog); FOUND IN nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 12
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,982,619 - 38,989,656 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,980,072 - 38,997,304 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,334,848 - 44,347,877 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RBM12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,982,619 - 38,989,656 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,980,072 - 38,997,304 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,334,848 - 44,347,877 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,648,925 - 35,664,900 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,648,925 - 35,664,956 (-)EnsemblGRCh38hg38GRCh38
GRCh372034,236,847 - 34,252,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,700,291 - 33,716,252 (-)NCBINCBI36Build 36hg18NCBI36
Build 342033,700,294 - 33,716,252NCBI
Celera2030,985,171 - 31,001,132 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2031,014,260 - 31,030,291 (-)NCBIHuRef
CHM1_12034,138,481 - 34,154,510 (-)NCBICHM1_1
T2T-CHM13v2.02037,369,900 - 37,385,875 (-)NCBIT2T-CHM13v2.0
Rbm12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,933,876 - 155,953,847 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,933,878 - 155,953,898 (-)EnsemblGRCm39 Ensembl
GRCm382156,094,882 - 156,111,965 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,091,958 - 156,111,978 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,920,618 - 155,937,701 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,786,323 - 155,803,368 (-)NCBIMGSCv36mm8
Celera2162,030,486 - 162,047,562 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.35NCBI
Rbm12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83165,069,744 - 165,089,994 (-)NCBIGRCr8
mRatBN7.23144,609,661 - 144,629,911 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,588,995 - 144,598,636 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl3144,611,623 - 144,629,915 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,478,352 - 148,495,682 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,095,624 - 157,112,956 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,835,150 - 154,852,481 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,616,038 - 151,658,427 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,616,037 - 151,625,644 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3152,176,095 - 152,179,193 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3152,150,152 - 152,159,749 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,641,095 - 151,658,417 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,980,656 - 158,023,043 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,504,101 - 146,521,424 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3143,334,355 - 143,351,678 (-)NCBICelera
Cytogenetic Map3q42NCBI
RBM12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,356,639 - 41,395,635 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,349,742 - 41,388,722 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,951,508 - 31,990,489 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12033,069,750 - 33,108,547 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2033,069,932 - 33,108,547 (-)Ensemblpanpan1.1panPan2
RBM12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,577,335 - 24,589,731 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,554,636 - 24,589,731 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2424,222,464 - 24,234,844 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02425,269,924 - 25,282,307 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2425,246,568 - 25,282,307 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,556,247 - 24,568,643 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,651,278 - 24,663,675 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,090,711 - 25,103,108 (-)NCBIUU_Cfam_GSD_1.0
Rbm12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,548,911 - 173,583,795 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,174,776 - 5,177,614 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365615,195,727 - 5,200,446 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,165,772 - 5,200,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,552,817 - 56,590,661 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,551,035 - 56,590,691 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660872,894,760 - 2,932,582 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,777,228 - 3,789,044 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248423,777,208 - 3,789,044 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RBM12
96 total Variants

Expression


Sequence


RefSeq Acc Id: XM_003483946   ⟹   XP_003483994
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,997,273 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005672896   ⟹   XP_005672953
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,997,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013985324   ⟹   XP_013840778
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,996,130 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013985325   ⟹   XP_013840779
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,997,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078265   ⟹   XP_020933924
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,997,282 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078266   ⟹   XP_020933925
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,997,273 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005672953   ⟸   XM_005672896
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933924   ⟸   XM_021078265
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933925   ⟸   XM_021078266
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003483994   ⟸   XM_003483946
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840779   ⟸   XM_013985325
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840778   ⟸   XM_013985324
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000047420 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005000051 UniProtKB/TrEMBL
  ENSSSCG00015057102 UniProtKB/TrEMBL
  ENSSSCG00025037201 UniProtKB/TrEMBL
  ENSSSCG00030037881 UniProtKB/TrEMBL
  ENSSSCG00040062295 UniProtKB/TrEMBL
  ENSSSCG00045012616 UniProtKB/TrEMBL
  ENSSSCG00050067962 UniProtKB/TrEMBL
  ENSSSCG00060069808 UniProtKB/TrEMBL
  ENSSSCG00070007853 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028045.4 UniProtKB/TrEMBL
  ENSSSCT00000066439 ENTREZGENE
  ENSSSCT00000066439.2 UniProtKB/TrEMBL
  ENSSSCT00000089234.2 UniProtKB/TrEMBL
  ENSSSCT00005000052.1 UniProtKB/TrEMBL
  ENSSSCT00005000055.1 UniProtKB/TrEMBL
  ENSSSCT00005000059.1 UniProtKB/TrEMBL
  ENSSSCT00015076066.1 UniProtKB/TrEMBL
  ENSSSCT00015076100.1 UniProtKB/TrEMBL
  ENSSSCT00015076113.1 UniProtKB/TrEMBL
  ENSSSCT00025050618.1 UniProtKB/TrEMBL
  ENSSSCT00025050769.1 UniProtKB/TrEMBL
  ENSSSCT00030052730.1 UniProtKB/TrEMBL
  ENSSSCT00030052836.1 UniProtKB/TrEMBL
  ENSSSCT00040085627.1 UniProtKB/TrEMBL
  ENSSSCT00040085671.1 UniProtKB/TrEMBL
  ENSSSCT00045021440.1 UniProtKB/TrEMBL
  ENSSSCT00045021563.1 UniProtKB/TrEMBL
  ENSSSCT00050092723.1 UniProtKB/TrEMBL
  ENSSSCT00050092766.1 UniProtKB/TrEMBL
  ENSSSCT00060095297.1 UniProtKB/TrEMBL
  ENSSSCT00060095510.1 UniProtKB/TrEMBL
  ENSSSCT00070015377.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM12_RRM1 UniProtKB/TrEMBL
  RBM12_RRM2 UniProtKB/TrEMBL
  RBM12_RRM3 UniProtKB/TrEMBL
  RBM12_RRM4 UniProtKB/TrEMBL
  RBM12_RRM5 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report ssc:100157350 UniProtKB/TrEMBL
NCBI Gene RBM12 ENTREZGENE
PANTHER FI22004P1 UniProtKB/TrEMBL
  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A480KU49 ENTREZGENE
  A0A4X1TBC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FPC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WLB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WLD4_PIG UniProtKB/TrEMBL
  I3LLW0_PIG UniProtKB/TrEMBL
UniProt Secondary A0A480KU49 UniProtKB/TrEMBL
  A0A5G2QW21 UniProtKB/TrEMBL