BVES (blood vessel epicardial substance) - Rat Genome Database

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Gene: BVES (blood vessel epicardial substance) Sus scrofa
Analyze
Symbol: BVES
Name: blood vessel epicardial substance
RGD ID: 14053614
Description: ENCODES a protein that exhibits structural molecule activity (ortholog); INVOLVED IN epithelial cell-cell adhesion (ortholog); heart development (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2X (ortholog); limb-girdle muscular dystrophy (ortholog); FOUND IN bicellular tight junction (ortholog); caveola (ortholog); cell junction (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: POP1; POPDC1; popeye domain containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl171,314,274 - 71,360,176 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1171,316,354 - 71,360,255 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2180,636,881 - 80,681,079 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
BVES
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl171,314,274 - 71,360,176 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1171,316,354 - 71,360,255 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2180,636,881 - 80,681,079 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BVES
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6105,096,822 - 105,137,157 (-)EnsemblGRCh38hg38GRCh38
GRCh386105,096,822 - 105,137,157 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376105,544,697 - 105,585,032 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366105,651,390 - 105,691,236 (-)NCBINCBI36hg18NCBI36
Build 346105,651,393 - 105,690,914NCBI
Celera6106,167,189 - 106,206,693 (-)NCBI
Cytogenetic Map6q21NCBI
HuRef6102,987,978 - 103,028,002 (-)NCBIHuRef
CHM1_16105,806,724 - 105,846,753 (-)NCBICHM1_1
Bves
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391045,211,783 - 45,248,580 (+)NCBIGRCm39mm39
GRCm39 Ensembl1045,211,868 - 45,248,575 (+)Ensembl
GRCm381045,335,735 - 45,372,484 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1045,335,772 - 45,372,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv371045,055,568 - 45,089,514 (+)NCBIGRCm37mm9NCBIm37
MGSCv361045,024,177 - 45,058,123 (+)NCBImm8
Celera1046,209,822 - 46,242,144 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1023.47NCBI
Bves
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22048,819,241 - 48,860,282 (+)NCBI
Rnor_6.0 Ensembl2050,439,883 - 50,474,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02050,439,885 - 50,474,678 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02052,052,628 - 52,086,539 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42049,671,174 - 49,671,683 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2051,164,981 - 51,200,377 (-)NCBICelera
Cytogenetic Map20q13NCBI
Bves
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541130,517,875 - 30,551,335 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541130,517,917 - 30,548,424 (-)NCBIChiLan1.0ChiLan1.0
BVES
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16106,784,465 - 106,822,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6106,787,615 - 106,822,050 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06102,915,148 - 102,951,141 (-)NCBIMhudiblu_PPA_v0panPan3
BVES
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11262,542,274 - 62,581,110 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1262,545,666 - 62,579,548 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1262,331,453 - 62,369,673 (-)NCBI
ROS_Cfam_1.01263,393,637 - 63,432,405 (-)NCBI
UMICH_Zoey_3.11262,748,894 - 62,787,110 (-)NCBI
UNSW_CanFamBas_1.01262,590,058 - 62,628,349 (-)NCBI
UU_Cfam_GSD_1.01262,868,831 - 62,907,346 (-)NCBI
Bves
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494697,512,420 - 97,548,660 (-)NCBI
SpeTri2.0NW_0049365641,791,733 - 1,823,421 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BVES
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11368,668,248 - 68,704,661 (+)NCBI
ChlSab1.1 Ensembl1368,668,321 - 68,707,885 (+)Ensembl
Bves
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624952326,812 - 360,790 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 2 1
Low 4 1 2 1
Below cutoff 4 1 3 16 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004825   ⟹   ENSSSCP00000004711
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl171,326,308 - 71,359,583 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000044926   ⟹   ENSSSCP00000053004
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl171,314,274 - 71,360,176 (-)Ensembl
RefSeq Acc Id: NM_001348416   ⟹   NP_001335345
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1171,317,773 - 71,360,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021087483   ⟹   XP_020943142
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1171,316,354 - 71,358,938 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021087540   ⟹   XP_020943199
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1171,326,265 - 71,360,252 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001335345 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943142 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943199 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACB13183 (Get FASTA)   NCBI Sequence Viewer  
  ACB13184 (Get FASTA)   NCBI Sequence Viewer  
  B8Q0B2 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020943142   ⟸   XM_021087483
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001335345   ⟸   NM_001348416
- UniProtKB: B8Q0B2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_020943199   ⟸   XM_021087540
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000053004   ⟸   ENSSSCT00000044926
RefSeq Acc Id: ENSSSCP00000004711   ⟸   ENSSSCT00000004825


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004366 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00065043727 UniProtKB/Swiss-Prot
  ENSSSCG00070023778 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000004711 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000053004 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00065025953 UniProtKB/Swiss-Prot
  ENSSSCP00070040062 UniProtKB/TrEMBL
  ENSSSCP00070040068 UniProtKB/TrEMBL
  ENSSSCP00070040071 UniProtKB/TrEMBL
  ENSSSCP00070040074 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004825 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000044926 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00065059824 UniProtKB/Swiss-Prot
  ENSSSCT00070047468 UniProtKB/TrEMBL
  ENSSSCT00070047474 UniProtKB/TrEMBL
  ENSSSCT00070047477 UniProtKB/TrEMBL
  ENSSSCT00070047480 UniProtKB/TrEMBL
InterPro cNMP-bd-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Popeye_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100153106 UniProtKB/Swiss-Prot
NCBI Gene BVES ENTREZGENE
PANTHER PTHR12101 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Popeye UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51206 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1VAJ4_PIG UniProtKB/TrEMBL
  A0A4X1VH00_PIG UniProtKB/TrEMBL
  B8Q0B2 ENTREZGENE
  F1RYQ3_PIG UniProtKB/TrEMBL
  F1RYQ4_PIG UniProtKB/TrEMBL
  POPD1_PIG UniProtKB/Swiss-Prot
UniProt Secondary B8Q0B1 UniProtKB/Swiss-Prot
VGNC ID VGNC:103040 ENTREZGENE