B4GAT1 (beta-1,4-glucuronyltransferase 1)

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Gene: B4GAT1 (beta-1,4-glucuronyltransferase 1) Sus scrofa

Analyze

Symbol:

B4GAT1

Name:

beta-1,4-glucuronyltransferase 1

RGD ID:

14053032

Description:

ENCODES a protein that exhibits N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN axon guidance (ortholog); poly-N-acetyllactosamine biosynthetic process (ortholog); protein glycosylation (ortholog); ASSOCIATED WITH autosomal recessive cutis laxa type IB (ortholog); Breast Neoplasms (ortholog); congenital muscular dystrophy-dystroglycanopathy type A1 (ortholog); FOUND IN Golgi apparatus (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

B3GNT1; UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	6,043,494 - 6,045,818 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	6,043,594 - 6,045,220 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	5,120,106 - 5,122,374 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive cutis laxa type IB (ISO)

Breast Neoplasms (ISO)

congenital muscular dystrophy-dystroglycanopathy type A1 (ISO)

congenital muscular dystrophy-dystroglycanopathy type A13 (ISO)

Walker-Warburg syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (ISO)

poly-N-acetyllactosamine biosynthetic process (ISO)

protein glycosylation (ISO)

protein O-linked mannosylation (IEA)

Cellular Component

Golgi apparatus (ISO)

Golgi membrane (IEA)

integral component of membrane (IEA)

Molecular Function

glucuronosyltransferase activity (IEA)

metal ion binding (IEA)

N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity (ISO)

protein binding (ISO)

References

Genomics

Comparative Map Data

B4GAT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	6,043,494 - 6,045,818 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	6,043,594 - 6,045,220 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	5,120,106 - 5,122,374 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

B4GAT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	11	66,345,374 - 66,347,629 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	11	66,345,374 - 66,347,629 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	11	66,112,845 - 66,115,100 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	65,869,419 - 65,871,737 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	11	65,869,419 - 65,871,671	NCBI
Celera	11	63,432,751 - 63,435,069 (-)	NCBI
Cytogenetic Map	11	q13.2	NCBI
HuRef	11	62,438,091 - 62,440,409 (-)	NCBI		HuRef
CHM1_1	11	65,996,963 - 65,999,260 (-)	NCBI		CHM1_1

B4gat1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	5,088,854 - 5,091,162 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	19	5,088,854 - 5,091,159 (+)	Ensembl
GRCm39 Ensembl	19	5,088,919 - 5,099,940 (+)	Ensembl
GRCm38	19	5,038,826 - 5,041,134 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	5,038,826 - 5,041,131 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	19	5,038,891 - 5,049,912 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	5,038,826 - 5,041,134 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	19	5,038,853 - 5,041,130 (+)	NCBI			mm8
Celera	19	4,907,924 - 4,910,232 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI

B4gat1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	202,343,268 - 202,345,490 (+)	NCBI
Rnor_6.0 Ensembl	1	220,416,018 - 220,418,240 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	220,322,854 - 220,325,076 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	227,347,041 - 227,349,263 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	207,659,039 - 207,661,261 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	207,812,492 - 207,814,713 (+)	NCBI
Celera	1	199,883,228 - 199,885,450 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

B4gat1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	18,979,545 - 18,981,889 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	18,979,545 - 18,981,889 (+)	NCBI	ChiLan1.0	ChiLan1.0

B4GAT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	65,036,417 - 65,038,678 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	65,036,417 - 65,038,678 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	61,711,028 - 61,713,356 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

B4GAT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	18	50,964,131 - 50,966,264 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	18	50,964,645 - 50,966,924 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

B4gat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936599	3,257,329 - 3,259,614 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

B4GAT1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	7,929,712 - 7,932,034 (+)	NCBI
ChlSab1.1 Ensembl	1	7,929,862 - 7,932,086 (+)	Ensembl

B4gat1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624767	20,033,750 - 20,036,019 (+)	NCBI

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium			3			23
Low	10	4		5	2		2	3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001315579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK235312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU928034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JN975036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSSCT00000014145 ⟹ ENSSSCP00000013759

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	6,043,494 - 6,045,818 (+)	Ensembl

RefSeq Acc Id:

NM_001315579 ⟹ NP_001302508

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	6,043,594 - 6,045,220 (+)	NCBI

Sequence:

show sequence

TGGCAGAGGTTGCGGCCCGGTGGTCCCTGCTGCGCGCCCCGAGCCCCGCAAGCCATGCAGATGT
CGTACGCCATCCGGTGCGCTTTCTACCAGCTGCTGCTGGCCGCGCTAATGCTGGTAGCGATGCT
GCAGCTGCTCTACCTGTCGCTGCTGTCCGGGCTGCATGGGCAGGAGGAGCAAGACCAATATTTC
GAGTTCTTCCCCCCGTCCCCGCAGTCGGTGGACCAAGTCAAGGCGCAGCTCCGCACCGCGCTGG
CCTCCGGAGGCGTCCTGGACGCTAGCGGTGACTACCGCGTCTACAGGGGCCTACTGAAGACCAC
CATGGACCCCAACGATGTGATCCTGGCGACGCACGCCAGTGTGGACAACCTGCTGCATCTATCG
GGCCTGTTGGAGCGTTGGGAGGGCCCGCTCTCCGTGTCGGTGTTCGCGGCCACCAAGGAGGAGG
CGCAGCTGGCCACGGTGCTGACCTATGCGCTGAGCAGCCACTGCCCCGATATGCGCGCCAGGGT
CGCCATGCACCTGGTGTGCCCCTCACGCTATGAGGCCGCCGTGCCCGATCCTCGGGAGCCAGGA
GAGTTTGCCCTGTTGCGGTCCTGCCAGGAGGTCTTTGACAAACTAGCCAGGGTAGCCCAGCCCG
GGATCAATTATGCACTGGGCACCAATGTCTCCTACCCCAATAACCTGTTGAGGAATCTGGCTCG
TGAGGGGGCCAACTATGCCCTGGTAATCGACGTGGACATGGTGCCCAGCGAGGGGCTGTGGAGA
GGCCTGCGGGAAATGCTGGATCAGAGCAAGCAGTGGGCGGGCACAGCGCTGGTGGTGCCCGCCT
TTGAGATCCGTCGAGCTCGCCGCATGCCCACTAACAAAAACGAGCTGCTGCAGCTCTACCAGGT
GGGCGAGGTGCGGCCTTTCTATTATGGGCTGTGCACGCCCTGCCAAGCGCCCACCAACTACTCC
CGCTGGGTCAACCTGCCAGAAGAGACCTTGCTGAGGCCTTCCTATGTGGTGCCCTGGCAGGACC
CCTGGGAGCCATTCTACGTGGCCGGAGGCAAGGTGCCCACTTTCGACGAGCGCTTTCGGCAGTA
TGGCTTCAATCGCATCAGCCAGGCTTGTGAGTTGCACGTGGCAGGATTCGATTTTGAGGTGCTG
AACGAAGGTTTCCTGGTTCATAAAGGCTTCAAAGAAGCTTTGAAATTCCACCCCCAAAAGGAGG
CCGAAAATCAGCACAATAAGATCCTTTACCGTCAGTTCAAGCAGGAGTTGAAGGCCAAGTACCC
CGACTCCCCACGTCACTGCTGAGCCCTTCCTTCCCCTAGTCTGAGAAGTCTCAGCCTCCTCCCT
CCTTAGGCCGCCCCTCAGGCCTGACTGGGGTAAGAAACGTCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001302508	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AFR42416	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001302508 ⟸ NM_001315579

- UniProtKB:

V9LLL5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQMSYAIRCAFYQLLLAALMLVAMLQLLYLSLLSGLHGQEEQDQYFEFFPPSPQSVDQVKAQLR
TALASGGVLDASGDYRVYRGLLKTTMDPNDVILATHASVDNLLHLSGLLERWEGPLSVSVFAAT
KEEAQLATVLTYALSSHCPDMRARVAMHLVCPSRYEAAVPDPREPGEFALLRSCQEVFDKLARV
AQPGINYALGTNVSYPNNLLRNLAREGANYALVIDVDMVPSEGLWRGLREMLDQSKQWAGTALV
VPAFEIRRARRMPTNKNELLQLYQVGEVRPFYYGLCTPCQAPTNYSRWVNLPEETLLRPSYVVP
WQDPWEPFYVAGGKVPTFDERFRQYGFNRISQACELHVAGFDFEVLNEGFLVHKGFKEALKFHP
QKEAENQHNKILYRQFKQELKAKYPDSPRHC

hide sequence

RefSeq Acc Id:

ENSSSCP00000013759 ⟸ ENSSSCT00000014145

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000012940	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSSSCP00000013759	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000014145	ENTREZGENE, UniProtKB/TrEMBL
InterPro	B4GAT1	UniProtKB/TrEMBL
KEGG Report	ssc:100518412	UniProtKB/TrEMBL
NCBI Gene	B4GAT1	ENTREZGENE
PANTHER	PTHR46420	UniProtKB/TrEMBL
UniProt	F1RUS9_PIG	UniProtKB/TrEMBL
	V9LLL5	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:85736	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM