B4GAT1 (beta-1,4-glucuronyltransferase 1) - Rat Genome Database
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Gene: B4GAT1 (beta-1,4-glucuronyltransferase 1) Sus scrofa
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Symbol: B4GAT1
Name: beta-1,4-glucuronyltransferase 1
RGD ID: 14053032
Description: ENCODES a protein that exhibits N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN axon guidance (ortholog); poly-N-acetyllactosamine biosynthetic process (ortholog); protein glycosylation (ortholog); ASSOCIATED WITH autosomal recessive cutis laxa type IB (ortholog); Breast Neoplasms (ortholog); congenital muscular dystrophy-dystroglycanopathy type A1 (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: B3GNT1; UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,043,494 - 6,045,818 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,043,594 - 6,045,220 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,120,106 - 5,122,374 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
B4GAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,043,494 - 6,045,818 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,043,594 - 6,045,220 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,120,106 - 5,122,374 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B4GAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1166,345,374 - 66,347,629 (-)EnsemblGRCh38hg38GRCh38
GRCh381166,345,374 - 66,347,629 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371166,112,845 - 66,115,100 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,869,419 - 65,871,737 (-)NCBINCBI36hg18NCBI36
Build 341165,869,419 - 65,871,671NCBI
Celera1163,432,751 - 63,435,069 (-)NCBI
Cytogenetic Map11q13.2NCBI
HuRef1162,438,091 - 62,440,409 (-)NCBIHuRef
CHM1_11165,996,963 - 65,999,260 (-)NCBICHM1_1
B4gat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,088,854 - 5,091,162 (+)NCBIGRCm39mm39
GRCm39 Ensembl195,088,854 - 5,091,159 (+)Ensembl
GRCm39 Ensembl195,088,919 - 5,099,940 (+)Ensembl
GRCm38195,038,826 - 5,041,134 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,038,826 - 5,041,131 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl195,038,891 - 5,049,912 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,038,826 - 5,041,134 (+)NCBIGRCm37mm9NCBIm37
MGSCv36195,038,853 - 5,041,130 (+)NCBImm8
Celera194,907,924 - 4,910,232 (+)NCBICelera
Cytogenetic Map19ANCBI
B4gat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21202,343,268 - 202,345,490 (+)NCBI
Rnor_6.0 Ensembl1220,416,018 - 220,418,240 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01220,322,854 - 220,325,076 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01227,347,041 - 227,349,263 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,659,039 - 207,661,261 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11207,812,492 - 207,814,713 (+)NCBI
Celera1199,883,228 - 199,885,450 (+)NCBICelera
Cytogenetic Map1q43NCBI
B4gat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,979,545 - 18,981,889 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,979,545 - 18,981,889 (+)NCBIChiLan1.0ChiLan1.0
B4GAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11165,036,417 - 65,038,678 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,036,417 - 65,038,678 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01161,711,028 - 61,713,356 (-)NCBIMhudiblu_PPA_v0panPan3
B4GAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1850,964,131 - 50,966,264 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11850,964,645 - 50,966,924 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
B4gat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365993,257,329 - 3,259,614 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GAT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,929,712 - 7,932,034 (+)NCBI
ChlSab1.1 Ensembl17,929,862 - 7,932,086 (+)Ensembl
B4gat1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476720,033,750 - 20,036,019 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 23
Low 10 4 5 2 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000014145   ⟹   ENSSSCP00000013759
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl26,043,494 - 6,045,818 (+)Ensembl
RefSeq Acc Id: NM_001315579   ⟹   NP_001302508
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,043,594 - 6,045,220 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001302508 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AFR42416 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001302508   ⟸   NM_001315579
- UniProtKB: V9LLL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000013759   ⟸   ENSSSCT00000014145


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012940 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000013759 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014145 ENTREZGENE, UniProtKB/TrEMBL
InterPro B4GAT1 UniProtKB/TrEMBL
KEGG Report ssc:100518412 UniProtKB/TrEMBL
NCBI Gene B4GAT1 ENTREZGENE
PANTHER PTHR46420 UniProtKB/TrEMBL
UniProt F1RUS9_PIG UniProtKB/TrEMBL
  V9LLL5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85736 ENTREZGENE