SLC1A2 (solute carrier family 1 member 2) - Rat Genome Database

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Gene: SLC1A2 (solute carrier family 1 member 2) Sus scrofa
Analyze
Symbol: SLC1A2
Name: solute carrier family 1 member 2
RGD ID: 14052914
Description: ENCODES a protein that exhibits high-affinity L-glutamate transmembrane transporter activity (ortholog); INVOLVED IN L-glutamate import across plasma membrane (ortholog); L-glutamate transmembrane transport (ortholog); response to antibiotic (ortholog); PARTICIPATES IN amyotrophic lateral sclerosis pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN dendritic shaft (ortholog); dendritic spine (ortholog); presynaptic membrane (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: excitatory amino acid transporter 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl225,604,950 - 25,848,276 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1225,603,892 - 25,771,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2227,968,216 - 28,136,634 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
SLC1A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl225,604,950 - 25,848,276 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1225,603,892 - 25,771,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2227,968,216 - 28,136,634 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC1A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381135,251,205 - 35,420,507 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1135,251,205 - 35,420,063 (-)EnsemblGRCh38hg38GRCh38
GRCh371135,272,752 - 35,441,605 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361135,229,328 - 35,397,681 (-)NCBINCBI36Build 36hg18NCBI36
Build 341135,229,328 - 35,397,372NCBI
Celera1135,420,071 - 35,588,420 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1134,972,036 - 35,140,670 (-)NCBIHuRef
CHM1_11135,271,219 - 35,439,999 (-)NCBICHM1_1
T2T-CHM13v2.01135,389,505 - 35,559,339 (-)NCBIT2T-CHM13v2.0
Slc1a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392102,488,584 - 102,621,129 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2102,489,004 - 102,621,129 (+)EnsemblGRCm39 Ensembl
GRCm382102,658,239 - 102,790,784 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2102,658,659 - 102,790,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv372102,498,840 - 102,630,941 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362102,507,277 - 102,578,945 (+)NCBIMGSCv36mm8
Celera2103,898,008 - 104,034,664 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.13NCBI
Slc1a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83109,460,109 - 109,590,445 (+)NCBIGRCr8
mRatBN7.2389,005,129 - 89,135,469 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl389,005,129 - 89,126,498 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx392,504,212 - 92,634,668 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03101,103,236 - 101,233,691 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0398,927,305 - 99,057,642 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0392,518,679 - 92,665,731 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl392,640,752 - 92,665,644 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0399,168,111 - 99,308,723 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4387,870,558 - 87,992,401 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1387,766,997 - 87,888,821 (+)NCBI
Celera388,087,285 - 88,206,296 (+)NCBICelera
Cytogenetic Map3q32NCBI
Slc1a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542210,930,296 - 11,073,032 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542210,929,987 - 11,082,220 (+)NCBIChiLan1.0ChiLan1.0
SLC1A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2937,471,506 - 37,639,909 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11137,476,132 - 37,644,775 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,223,811 - 35,392,799 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,098,291 - 35,266,940 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,107,920 - 35,265,878 (-)Ensemblpanpan1.1panPan2
SLC1A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11832,565,258 - 32,717,052 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1832,565,258 - 32,709,225 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1832,172,140 - 32,315,018 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01833,175,536 - 33,327,487 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1833,175,537 - 33,319,660 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11832,737,141 - 32,880,123 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01832,322,154 - 32,465,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01832,967,648 - 33,106,043 (+)NCBIUU_Cfam_GSD_1.0
Slc1a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494729,654,306 - 29,802,620 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365332,779,518 - 2,918,298 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365332,779,650 - 2,918,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC1A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,845,512 - 30,012,261 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,847,043 - 29,989,975 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038126,963,701 - 127,135,271 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc1a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476711,768,951 - 11,911,017 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476711,768,942 - 11,919,315 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC1A2
7440 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 13 11 23 2 5 3

Sequence


Ensembl Acc Id: ENSSSCT00000014522   ⟹   ENSSSCP00000014129
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,604,951 - 25,848,276 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000048330   ⟹   ENSSSCP00000045085
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,605,000 - 25,761,892 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000051003   ⟹   ENSSSCP00000049854
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,604,950 - 25,766,657 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000051921   ⟹   ENSSSCP00000047267
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,657,458 - 25,760,181 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000053521   ⟹   ENSSSCP00000052232
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,707,010 - 25,760,181 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000092276   ⟹   ENSSSCP00000077122
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,604,950 - 25,766,657 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000098717   ⟹   ENSSSCP00000077167
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,641,457 - 25,769,205 (+)Ensembl
RefSeq Acc Id: XM_003480708   ⟹   XP_003480756
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,603,892 - 25,764,767 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005660995   ⟹   XP_005661052
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,641,335 - 25,771,840 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005660996   ⟹   XP_005661053
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,662,579 - 25,764,767 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085276   ⟹   XP_020940935
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,656,823 - 25,764,767 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085277   ⟹   XP_020940936
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,662,579 - 25,764,767 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085278   ⟹   XP_020940937
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,615,373 - 25,764,767 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003480756   ⟸   XM_003480708
- Peptide Label: isoform X2
- UniProtKB: A0A287B178 (UniProtKB/TrEMBL),   A0A4X1SNF2 (UniProtKB/TrEMBL),   A0A8D0YP25 (UniProtKB/TrEMBL),   A0A8D0K951 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020940937   ⟸   XM_021085278
- Peptide Label: isoform X4
- UniProtKB: A0A4X1SNI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005661052   ⟸   XM_005660995
- Peptide Label: isoform X1
- UniProtKB: A0A287AK79 (UniProtKB/TrEMBL),   A0A4X1SM79 (UniProtKB/TrEMBL),   A0A4X1SMK7 (UniProtKB/TrEMBL),   A0A4X1SMT4 (UniProtKB/TrEMBL),   A0A8D0KBA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020940935   ⟸   XM_021085276
- Peptide Label: isoform X4
- UniProtKB: A0A4X1SNI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020940936   ⟸   XM_021085277
- Peptide Label: isoform X4
- UniProtKB: A0A4X1SNI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005661053   ⟸   XM_005660996
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SMK7 (UniProtKB/TrEMBL),   A0A4X1SMT4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000049854   ⟸   ENSSSCT00000051003
Ensembl Acc Id: ENSSSCP00000047267   ⟸   ENSSSCT00000051921
Ensembl Acc Id: ENSSSCP00000052232   ⟸   ENSSSCT00000053521
Ensembl Acc Id: ENSSSCP00000014129   ⟸   ENSSSCT00000014522
Ensembl Acc Id: ENSSSCP00000045085   ⟸   ENSSSCT00000048330
Ensembl Acc Id: ENSSSCP00000077167   ⟸   ENSSSCT00000098717
Ensembl Acc Id: ENSSSCP00000077122   ⟸   ENSSSCT00000092276


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013296 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025034759 UniProtKB/TrEMBL
  ENSSSCG00035011810 UniProtKB/TrEMBL
  ENSSSCG00040049505 UniProtKB/TrEMBL
  ENSSSCG00045007229 UniProtKB/TrEMBL
  ENSSSCG00050040776 UniProtKB/TrEMBL
  ENSSSCG00055018360 UniProtKB/TrEMBL
  ENSSSCG00060055360 UniProtKB/TrEMBL
  ENSSSCG00065037284 UniProtKB/TrEMBL
  ENSSSCG00070002040 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014522.5 UniProtKB/TrEMBL
  ENSSSCT00000048330.2 UniProtKB/TrEMBL
  ENSSSCT00000051003 ENTREZGENE
  ENSSSCT00000051003.3 UniProtKB/TrEMBL
  ENSSSCT00000051921 ENTREZGENE
  ENSSSCT00000051921.3 UniProtKB/TrEMBL
  ENSSSCT00000053521.3 UniProtKB/TrEMBL
  ENSSSCT00000092276.1 UniProtKB/TrEMBL
  ENSSSCT00000098717 ENTREZGENE
  ENSSSCT00000098717.1 UniProtKB/TrEMBL
  ENSSSCT00025047549.1 UniProtKB/TrEMBL
  ENSSSCT00025047794.1 UniProtKB/TrEMBL
  ENSSSCT00035014932.1 UniProtKB/TrEMBL
  ENSSSCT00035014961.1 UniProtKB/TrEMBL
  ENSSSCT00040067719.1 UniProtKB/TrEMBL
  ENSSSCT00045012258.1 UniProtKB/TrEMBL
  ENSSSCT00045012425.1 UniProtKB/TrEMBL
  ENSSSCT00050055300.1 UniProtKB/TrEMBL
  ENSSSCT00055036961.1 UniProtKB/TrEMBL
  ENSSSCT00055037530.1 UniProtKB/TrEMBL
  ENSSSCT00060075635.1 UniProtKB/TrEMBL
  ENSSSCT00065050882.1 UniProtKB/TrEMBL
  ENSSSCT00065050925.1 UniProtKB/TrEMBL
  ENSSSCT00070004344.1 UniProtKB/TrEMBL
  ENSSSCT00070004360.1 UniProtKB/TrEMBL
  ENSSSCT00070004367.1 UniProtKB/TrEMBL
  ENSSSCT00070004377.1 UniProtKB/TrEMBL
  ENSSSCT00070004389.1 UniProtKB/TrEMBL
  ENSSSCT00070004419.1 UniProtKB/TrEMBL
  ENSSSCT00070004439.1 UniProtKB/TrEMBL
  ENSSSCT00070004469.1 UniProtKB/TrEMBL
  ENSSSCT00070004485.1 UniProtKB/TrEMBL
  ENSSSCT00070004490.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3860.10 UniProtKB/TrEMBL
InterPro DAACS UniProtKB/TrEMBL
  Na-dicarboxylate_symporter UniProtKB/TrEMBL
  Na-dicarboxylate_symporter_CS UniProtKB/TrEMBL
  Na:dicarbo_symporter_sf UniProtKB/TrEMBL
KEGG Report ssc:100627068 UniProtKB/TrEMBL
NCBI Gene SLC1A2 ENTREZGENE
PANTHER EXCITATORY AMINO ACID TRANSPORTER 2 UniProtKB/TrEMBL
  SODIUM/DICARBOXYLATE SYMPORTER-RELATED UniProtKB/TrEMBL
Pfam SDF UniProtKB/TrEMBL
PRINTS EDTRNSPORT UniProtKB/TrEMBL
PROSITE NA_DICARBOXYL_SYMP_1 UniProtKB/TrEMBL
  NA_DICARBOXYL_SYMP_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF118215 UniProtKB/TrEMBL
UniProt A0A287AK79 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AME2_PIG UniProtKB/TrEMBL
  A0A287AT59_PIG UniProtKB/TrEMBL
  A0A287B178 ENTREZGENE
  A0A287B6T1_PIG UniProtKB/TrEMBL
  A0A4X1SM79 ENTREZGENE
  A0A4X1SM94_PIG UniProtKB/TrEMBL
  A0A4X1SMJ4_PIG UniProtKB/TrEMBL
  A0A4X1SMK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SMT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SNF2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SNF9_PIG UniProtKB/TrEMBL
  A0A4X1SNI3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SNS8_PIG UniProtKB/TrEMBL
  A0A8D0K7K3_PIG UniProtKB/TrEMBL
  A0A8D0K951 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0KBA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0KJY4_PIG UniProtKB/TrEMBL
  A0A8D0YP25 ENTREZGENE, UniProtKB/TrEMBL
  F1SHF9_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287B178 UniProtKB/TrEMBL
  A0A4X1SM79 UniProtKB/TrEMBL
  A0A8W4FFM9 UniProtKB/TrEMBL
VGNC ID VGNC:92964 ENTREZGENE