SLC1A2 (solute carrier family 1 member 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SLC1A2 (solute carrier family 1 member 2) Sus scrofa
Analyze
Symbol: SLC1A2
Name: solute carrier family 1 member 2
RGD ID: 14052914
Description: ENCODES a protein that exhibits anion transmembrane transporter activity (ortholog); high-affinity glutamate transmembrane transporter activity (ortholog); INVOLVED IN adult behavior (ortholog); anion transmembrane transport (ortholog); cellular response to extracellular stimulus (ortholog); PARTICIPATES IN amyotrophic lateral sclerosis pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Cocaine-Related Disorders (ortholog); developmental and epileptic encephalopathy 41 (ortholog); FOUND IN astrocyte projection (ortholog); axon (ortholog); cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: excitatory amino acid transporter 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl225,604,950 - 25,848,276 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1225,603,892 - 25,771,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2227,968,216 - 28,136,634 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
SLC1A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl225,604,950 - 25,848,276 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1225,603,892 - 25,771,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2227,968,216 - 28,136,634 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC1A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1135,251,205 - 35,420,063 (-)EnsemblGRCh38hg38GRCh38
GRCh381135,251,205 - 35,420,058 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371135,272,752 - 35,441,605 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361135,229,328 - 35,397,681 (-)NCBINCBI36hg18NCBI36
Build 341135,229,328 - 35,397,372NCBI
Celera1135,420,071 - 35,588,420 (-)NCBI
Cytogenetic Map11p13NCBI
HuRef1134,972,036 - 35,140,670 (-)NCBIHuRef
CHM1_11135,271,219 - 35,439,999 (-)NCBICHM1_1
Slc1a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392102,488,584 - 102,621,129 (+)NCBIGRCm39mm39
GRCm39 Ensembl2102,489,004 - 102,621,129 (+)Ensembl
GRCm382102,658,239 - 102,790,784 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2102,658,659 - 102,790,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv372102,498,840 - 102,630,941 (+)NCBIGRCm37mm9NCBIm37
MGSCv362102,507,277 - 102,578,945 (+)NCBImm8
Celera2103,898,008 - 104,034,664 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.13NCBI
Slc1a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2389,005,129 - 89,126,498 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl389,005,129 - 89,126,498 (+)Ensembl
Rnor_6.0392,518,679 - 92,665,731 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl392,640,752 - 92,665,644 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0399,168,111 - 99,308,723 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4387,870,558 - 87,992,401 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1387,766,997 - 87,888,821 (+)NCBI
Celera388,087,285 - 88,206,296 (+)NCBICelera
Cytogenetic Map3q32NCBI
Slc1a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542210,930,296 - 11,073,032 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542210,929,987 - 11,082,220 (+)NCBIChiLan1.0ChiLan1.0
SLC1A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11135,098,291 - 35,266,940 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,107,920 - 35,265,878 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01135,223,811 - 35,392,799 (-)NCBIMhudiblu_PPA_v0panPan3
SLC1A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11832,565,258 - 32,717,052 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1832,565,258 - 32,709,225 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1832,172,140 - 32,315,018 (+)NCBI
ROS_Cfam_1.01833,175,536 - 33,327,487 (+)NCBI
UMICH_Zoey_3.11832,737,141 - 32,880,123 (+)NCBI
UNSW_CanFamBas_1.01832,322,154 - 32,465,264 (+)NCBI
UU_Cfam_GSD_1.01832,967,648 - 33,106,043 (+)NCBI
Slc1a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494729,654,306 - 29,802,620 (+)NCBI
SpeTri2.0NW_0049365332,779,650 - 2,918,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC1A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,845,512 - 30,012,261 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl129,847,043 - 29,989,975 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038126,963,701 - 127,135,271 (+)NCBIVero_WHO_p1.0
Slc1a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476711,768,942 - 11,919,315 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 20
Low 8 4 3 4 3 1 3
Below cutoff 2 2 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000014522   ⟹   ENSSSCP00000014129
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,605,492 - 25,848,276 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000048330   ⟹   ENSSSCP00000045085
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,605,000 - 25,761,892 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051003   ⟹   ENSSSCP00000049854
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,604,950 - 25,766,656 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051921   ⟹   ENSSSCP00000047267
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,657,458 - 25,760,211 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053521   ⟹   ENSSSCP00000052232
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl225,641,444 - 25,760,211 (+)Ensembl
RefSeq Acc Id: XM_003480708   ⟹   XP_003480756
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,603,892 - 25,764,767 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005660995   ⟹   XP_005661052
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,641,335 - 25,771,840 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005660996   ⟹   XP_005661053
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,662,579 - 25,764,767 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085276   ⟹   XP_020940935
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,656,823 - 25,764,767 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085277   ⟹   XP_020940936
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,662,579 - 25,764,767 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085278   ⟹   XP_020940937
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1225,615,373 - 25,764,767 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_003480756   ⟸   XM_003480708
- Peptide Label: isoform X2
- UniProtKB: A0A287B178 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020940937   ⟸   XM_021085278
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005661052   ⟸   XM_005660995
- Peptide Label: isoform X1
- UniProtKB: A0A287AK79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020940935   ⟸   XM_021085276
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020940936   ⟸   XM_021085277
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005661053   ⟸   XM_005660996
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000049854   ⟸   ENSSSCT00000051003
RefSeq Acc Id: ENSSSCP00000047267   ⟸   ENSSSCT00000051921
RefSeq Acc Id: ENSSSCP00000052232   ⟸   ENSSSCT00000053521
RefSeq Acc Id: ENSSSCP00000014129   ⟸   ENSSSCT00000014522
RefSeq Acc Id: ENSSSCP00000045085   ⟸   ENSSSCT00000048330


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013296 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070002040 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000014129 UniProtKB/TrEMBL
  ENSSSCP00000045085 UniProtKB/TrEMBL
  ENSSSCP00000047267 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000049854 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000052232 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070003579 UniProtKB/TrEMBL
  ENSSSCP00070003594 UniProtKB/TrEMBL
  ENSSSCP00070003599 UniProtKB/TrEMBL
  ENSSSCP00070003608 UniProtKB/TrEMBL
  ENSSSCP00070003618 UniProtKB/TrEMBL
  ENSSSCP00070003640 UniProtKB/TrEMBL
  ENSSSCP00070003655 UniProtKB/TrEMBL
  ENSSSCP00070003684 UniProtKB/TrEMBL
  ENSSSCP00070003699 UniProtKB/TrEMBL
  ENSSSCP00070003703 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014522 UniProtKB/TrEMBL
  ENSSSCT00000048330 UniProtKB/TrEMBL
  ENSSSCT00000051003 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000051921 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000053521 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070004344 UniProtKB/TrEMBL
  ENSSSCT00070004360 UniProtKB/TrEMBL
  ENSSSCT00070004367 UniProtKB/TrEMBL
  ENSSSCT00070004377 UniProtKB/TrEMBL
  ENSSSCT00070004389 UniProtKB/TrEMBL
  ENSSSCT00070004419 UniProtKB/TrEMBL
  ENSSSCT00070004439 UniProtKB/TrEMBL
  ENSSSCT00070004469 UniProtKB/TrEMBL
  ENSSSCT00070004485 UniProtKB/TrEMBL
  ENSSSCT00070004490 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3860.10 UniProtKB/TrEMBL
InterPro Na-dicarboxylate_symporter UniProtKB/TrEMBL
  Na-dicarboxylate_symporter_CS UniProtKB/TrEMBL
  Na:dicarbo_symporter_sf UniProtKB/TrEMBL
KEGG Report ssc:100627068 UniProtKB/TrEMBL
NCBI Gene SLC1A2 ENTREZGENE
Pfam SDF UniProtKB/TrEMBL
PROSITE NA_DICARBOXYL_SYMP_1 UniProtKB/TrEMBL
  NA_DICARBOXYL_SYMP_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF118215 UniProtKB/TrEMBL
UniProt A0A287AK79 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AME2_PIG UniProtKB/TrEMBL
  A0A287AT59_PIG UniProtKB/TrEMBL
  A0A287B178 ENTREZGENE, UniProtKB/TrEMBL
  A0A287B6T1_PIG UniProtKB/TrEMBL
  A0A4X1SM79_PIG UniProtKB/TrEMBL
  A0A4X1SM94_PIG UniProtKB/TrEMBL
  A0A4X1SMH9_PIG UniProtKB/TrEMBL
  A0A4X1SMJ4_PIG UniProtKB/TrEMBL
  A0A4X1SMK7_PIG UniProtKB/TrEMBL
  A0A4X1SMT4_PIG UniProtKB/TrEMBL
  A0A4X1SNF2_PIG UniProtKB/TrEMBL
  A0A4X1SNF9_PIG UniProtKB/TrEMBL
  A0A4X1SNI3_PIG UniProtKB/TrEMBL
  A0A4X1SNS8_PIG UniProtKB/TrEMBL
  F1SHF9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92964 ENTREZGENE