LOC100625180 (proteoglycan 3) - Rat Genome Database

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Gene: LOC100625180 (proteoglycan 3) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100625180
Name: proteoglycan 3
RGD ID: 14050619
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); INVOLVED IN immune response (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1213,525,472 - 13,529,620 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2213,320,609 - 13,324,730 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100625180
150 total Variants

Expression


Sequence


RefSeq Acc Id: XM_003353867   ⟹   XP_003353915
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1213,525,472 - 13,529,620 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003353915   ⟸   XM_003353867
- UniProtKB: A0A480R359 (UniProtKB/TrEMBL),   A0A4X1VQL5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000058094 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00000059948 UniProtKB/TrEMBL
  ENSSSCG00070025901 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025751.4 UniProtKB/TrEMBL
  ENSSSCT00000056838 ENTREZGENE
  ENSSSCT00000056838.3 UniProtKB/TrEMBL
  ENSSSCT00000103222.1 UniProtKB/TrEMBL
  ENSSSCT00070051809.1 UniProtKB/TrEMBL
  ENSSSCT00070051810.1 UniProtKB/TrEMBL
  ENSSSCT00070051812.1 UniProtKB/TrEMBL
  ENSSSCT00070051816.1 UniProtKB/TrEMBL
  ENSSSCT00070051819.1 UniProtKB/TrEMBL
  ENSSSCT00070051824.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  EMBP_CTLD UniProtKB/TrEMBL
  Eosinophil_major_basic UniProtKB/TrEMBL
KEGG Report ssc:100625180 UniProtKB/TrEMBL
NCBI Gene LOC100625180 ENTREZGENE
PANTHER ACCESSORY GLAND PROTEIN ACP29AB-RELATED UniProtKB/TrEMBL
  C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PRINTS EMAJORBASICP UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A287ANQ8_PIG UniProtKB/TrEMBL
  A0A480R359 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VK19_PIG UniProtKB/TrEMBL
  A0A4X1VK24_PIG UniProtKB/TrEMBL
  A0A4X1VK32_PIG UniProtKB/TrEMBL
  A0A4X1VQL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VRS4_PIG UniProtKB/TrEMBL
  A0A8X9AEY3_PIG UniProtKB/TrEMBL
  I3LV61_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287A6J4 UniProtKB/TrEMBL