NRP2 (neuropilin 2) - Rat Genome Database

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Gene: NRP2 (neuropilin 2) Sus scrofa
Analyze
Symbol: NRP2
Name: neuropilin 2
RGD ID: 14049797
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN axon guidance (ortholog); cellular response to leukemia inhibitory factor (ortholog); heart development (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Hirschsprung's disease (ortholog); FOUND IN axon (inferred); glutamatergic synapse (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuropilin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15108,974,816 - 109,092,305 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115108,974,246 - 109,092,316 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap15q21-q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
NRP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15108,974,816 - 109,092,305 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115108,974,246 - 109,092,316 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap15q21-q26NCBI
NRP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382205,682,501 - 205,798,131 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2205,681,990 - 205,798,133 (+)EnsemblGRCh38hg38GRCh38
GRCh372206,547,225 - 206,662,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362206,255,469 - 206,371,102 (+)NCBINCBI36hg18NCBI36
Build 342206,372,729 - 206,488,362NCBI
Celera2200,305,001 - 200,420,624 (+)NCBI
Cytogenetic Map2q33.3NCBI
HuRef2198,395,758 - 198,511,368 (+)NCBIHuRef
CHM1_12206,553,933 - 206,669,559 (+)NCBICHM1_1
T2T-CHM13v2.02206,164,852 - 206,280,478 (+)NCBI
Nrp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39162,742,476 - 62,857,851 (+)NCBIGRCm39mm39
GRCm39 Ensembl162,742,444 - 62,857,854 (+)Ensembl
GRCm38162,703,317 - 62,818,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl162,703,285 - 62,818,695 (+)EnsemblGRCm38mm10GRCm38
MGSCv37162,749,891 - 62,865,266 (+)NCBIGRCm37mm9NCBIm37
MGSCv36162,637,986 - 62,750,163 (+)NCBImm8
Celera163,214,234 - 63,328,949 (+)NCBICelera
Cytogenetic Map1C2NCBI
Nrp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2964,122,815 - 64,238,007 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl964,123,132 - 64,237,958 (+)Ensembl
Rnor_6.0969,496,875 - 69,609,802 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl969,497,121 - 69,612,087 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0969,307,221 - 69,420,379 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4961,348,529 - 61,460,457 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1961,495,510 - 61,607,439 (+)NCBI
Celera961,541,966 - 61,654,219 (+)NCBICelera
Cytogenetic Map9q32NCBI
Nrp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554579,197,405 - 9,316,787 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554579,197,621 - 9,316,789 (-)NCBIChiLan1.0ChiLan1.0
NRP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B211,042,324 - 211,157,547 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B211,042,324 - 211,157,547 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B92,911,721 - 93,027,032 (+)NCBIMhudiblu_PPA_v0panPan3
NRP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13714,293,545 - 14,408,984 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3714,293,614 - 14,406,949 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3715,172,096 - 15,287,617 (+)NCBI
ROS_Cfam_1.03714,230,443 - 14,345,834 (+)NCBI
ROS_Cfam_1.0 Ensembl3714,230,535 - 14,345,832 (+)Ensembl
UMICH_Zoey_3.13714,184,082 - 14,299,459 (+)NCBI
UNSW_CanFamBas_1.03714,156,464 - 14,271,604 (+)NCBI
UU_Cfam_GSD_1.03714,150,952 - 14,266,106 (+)NCBI
Nrp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303162,471,295 - 162,587,007 (+)NCBI
SpeTri2.0NW_0049366312,106,378 - 2,222,082 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11091,460,179 - 91,575,408 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1091,460,373 - 91,557,430 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040107,804,373 - 107,919,654 (-)NCBIVero_WHO_p1.0
Nrp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476510,372,099 - 10,484,963 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462476510,372,172 - 10,484,766 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 2
Low 8 4 3 3 2 23 2 3 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000024105   ⟹   ENSSSCP00000021247
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15108,974,816 - 109,092,305 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000046744   ⟹   ENSSSCP00000050474
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15108,974,816 - 109,074,807 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066403   ⟹   ENSSSCP00000050574
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15108,974,819 - 109,092,277 (+)Ensembl
RefSeq Acc Id: XM_021076239   ⟹   XP_020931898
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115108,974,703 - 109,092,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076240   ⟹   XP_020931899
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115108,974,703 - 109,092,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076241   ⟹   XP_020931900
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115108,974,699 - 109,074,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076242   ⟹   XP_020931901
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115108,974,246 - 109,074,814 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020931901   ⟸   XM_021076242
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020931900   ⟸   XM_021076241
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020931898   ⟸   XM_021076239
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020931899   ⟸   XM_021076240
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000050574   ⟸   ENSSSCT00000066403
RefSeq Acc Id: ENSSSCP00000050474   ⟸   ENSSSCT00000046744
RefSeq Acc Id: ENSSSCP00000021247   ⟸   ENSSSCT00000024105
Protein Domains
CUB   DUF3481   F5/8 type C   MAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026383 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005038287 UniProtKB/TrEMBL
  ENSSSCG00025070312 UniProtKB/TrEMBL
  ENSSSCG00030027113 UniProtKB/TrEMBL
  ENSSSCG00035052947 UniProtKB/TrEMBL
  ENSSSCG00040050279 UniProtKB/TrEMBL
  ENSSSCG00045014919 UniProtKB/TrEMBL
  ENSSSCG00050048612 UniProtKB/TrEMBL
  ENSSSCG00055007315 UniProtKB/TrEMBL
  ENSSSCG00060071717 UniProtKB/TrEMBL
  ENSSSCG00065049960 UniProtKB/TrEMBL
  ENSSSCG00070021156 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000021247 ENTREZGENE
  ENSSSCP00000021247.3 UniProtKB/TrEMBL
  ENSSSCP00000050474 ENTREZGENE
  ENSSSCP00000050474.2 UniProtKB/TrEMBL
  ENSSSCP00000050574.2 UniProtKB/TrEMBL
  ENSSSCP00005039268.1 UniProtKB/TrEMBL
  ENSSSCP00005039290.1 UniProtKB/TrEMBL
  ENSSSCP00005039313.1 UniProtKB/TrEMBL
  ENSSSCP00005039352.1 UniProtKB/TrEMBL
  ENSSSCP00005039411.1 UniProtKB/TrEMBL
  ENSSSCP00025042404.1 UniProtKB/TrEMBL
  ENSSSCP00025042660.1 UniProtKB/TrEMBL
  ENSSSCP00025042775.1 UniProtKB/TrEMBL
  ENSSSCP00030017409.1 UniProtKB/TrEMBL
  ENSSSCP00030017415.1 UniProtKB/TrEMBL
  ENSSSCP00030017420.1 UniProtKB/TrEMBL
  ENSSSCP00030017423.1 UniProtKB/TrEMBL
  ENSSSCP00035028664.1 UniProtKB/TrEMBL
  ENSSSCP00035028669.1 UniProtKB/TrEMBL
  ENSSSCP00035028672.1 UniProtKB/TrEMBL
  ENSSSCP00040028871.1 UniProtKB/TrEMBL
  ENSSSCP00040028952.1 UniProtKB/TrEMBL
  ENSSSCP00040029047.1 UniProtKB/TrEMBL
  ENSSSCP00045017513.1 UniProtKB/TrEMBL
  ENSSSCP00045017590.1 UniProtKB/TrEMBL
  ENSSSCP00045017665.1 UniProtKB/TrEMBL
  ENSSSCP00045017723.1 UniProtKB/TrEMBL
  ENSSSCP00050028493.1 UniProtKB/TrEMBL
  ENSSSCP00050028498.1 UniProtKB/TrEMBL
  ENSSSCP00055012754.1 UniProtKB/TrEMBL
  ENSSSCP00055012818.1 UniProtKB/TrEMBL
  ENSSSCP00055012880.1 UniProtKB/TrEMBL
  ENSSSCP00055012954.1 UniProtKB/TrEMBL
  ENSSSCP00055013021.1 UniProtKB/TrEMBL
  ENSSSCP00055013080.1 UniProtKB/TrEMBL
  ENSSSCP00060042476.1 UniProtKB/TrEMBL
  ENSSSCP00060042506.1 UniProtKB/TrEMBL
  ENSSSCP00065029793.1 UniProtKB/TrEMBL
  ENSSSCP00065029799.1 UniProtKB/TrEMBL
  ENSSSCP00070035378.1 UniProtKB/TrEMBL
  ENSSSCP00070035391.1 UniProtKB/TrEMBL
  ENSSSCP00070035394.1 UniProtKB/TrEMBL
  ENSSSCP00070035402.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024105 ENTREZGENE
  ENSSSCT00000024105.3 UniProtKB/TrEMBL
  ENSSSCT00000046744 ENTREZGENE
  ENSSSCT00000046744.2 UniProtKB/TrEMBL
  ENSSSCT00000066403.2 UniProtKB/TrEMBL
  ENSSSCT00005063547.1 UniProtKB/TrEMBL
  ENSSSCT00005063582.1 UniProtKB/TrEMBL
  ENSSSCT00005063622.1 UniProtKB/TrEMBL
  ENSSSCT00005063689.1 UniProtKB/TrEMBL
  ENSSSCT00005063780.1 UniProtKB/TrEMBL
  ENSSSCT00025096588.1 UniProtKB/TrEMBL
  ENSSSCT00025097166.1 UniProtKB/TrEMBL
  ENSSSCT00025097415.1 UniProtKB/TrEMBL
  ENSSSCT00030037925.1 UniProtKB/TrEMBL
  ENSSSCT00030037939.1 UniProtKB/TrEMBL
  ENSSSCT00030037948.1 UniProtKB/TrEMBL
  ENSSSCT00030037954.1 UniProtKB/TrEMBL
  ENSSSCT00035070627.1 UniProtKB/TrEMBL
  ENSSSCT00035070643.1 UniProtKB/TrEMBL
  ENSSSCT00035070648.1 UniProtKB/TrEMBL
  ENSSSCT00040067930.1 UniProtKB/TrEMBL
  ENSSSCT00040068090.1 UniProtKB/TrEMBL
  ENSSSCT00040068269.1 UniProtKB/TrEMBL
  ENSSSCT00045025371.1 UniProtKB/TrEMBL
  ENSSSCT00045025488.1 UniProtKB/TrEMBL
  ENSSSCT00045025592.1 UniProtKB/TrEMBL
  ENSSSCT00045025679.1 UniProtKB/TrEMBL
  ENSSSCT00050066213.1 UniProtKB/TrEMBL
  ENSSSCT00050066225.1 UniProtKB/TrEMBL
  ENSSSCT00055016209.1 UniProtKB/TrEMBL
  ENSSSCT00055016277.1 UniProtKB/TrEMBL
  ENSSSCT00055016350.1 UniProtKB/TrEMBL
  ENSSSCT00055016441.1 UniProtKB/TrEMBL
  ENSSSCT00055016520.1 UniProtKB/TrEMBL
  ENSSSCT00055016583.1 UniProtKB/TrEMBL
  ENSSSCT00060097988.1 UniProtKB/TrEMBL
  ENSSSCT00060098053.1 UniProtKB/TrEMBL
  ENSSSCT00065068426.1 UniProtKB/TrEMBL
  ENSSSCT00065068436.1 UniProtKB/TrEMBL
  ENSSSCT00070042101.1 UniProtKB/TrEMBL
  ENSSSCT00070042115.1 UniProtKB/TrEMBL
  ENSSSCT00070042118.1 UniProtKB/TrEMBL
  ENSSSCT00070042127.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.290 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  CUB_dom UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  MAM_dom UniProtKB/TrEMBL
  Neuropilin UniProtKB/TrEMBL
  Neuropilin-2 UniProtKB/TrEMBL
  Neuropilin_C UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
NCBI Gene NRP2 ENTREZGENE
PANTHER PTHR46806:SF2 UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  DUF3481 UniProtKB/TrEMBL
  F5_F8_type_C UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
PIRSF Neuropilin UniProtKB/TrEMBL
PRINTS MAMDOMAIN UniProtKB/TrEMBL
PROSITE CUB UniProtKB/TrEMBL
  FA58C_1 UniProtKB/TrEMBL
  FA58C_2 UniProtKB/TrEMBL
  FA58C_3 UniProtKB/TrEMBL
  MAM_2 UniProtKB/TrEMBL
SMART CUB UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/TrEMBL
  SSF49854 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A287B2K4_PIG UniProtKB/TrEMBL
  A0A287B3A2_PIG UniProtKB/TrEMBL
  A0A4X1UYK1_PIG UniProtKB/TrEMBL
  A0A4X1V186_PIG UniProtKB/TrEMBL
  A0A4X1V1A3_PIG UniProtKB/TrEMBL
  A0A4X1V271_PIG UniProtKB/TrEMBL
  A0A5K1V732_PIG UniProtKB/TrEMBL
  A0A8D0K639_PIG UniProtKB/TrEMBL
  A0A8D0K689_PIG UniProtKB/TrEMBL
  A0A8D0K8A2_PIG UniProtKB/TrEMBL
  A0A8D0TL00_PIG UniProtKB/TrEMBL
  A0A8D1HGF1_PIG UniProtKB/TrEMBL
  I3LB28_PIG UniProtKB/TrEMBL
  Q5RLQ5_PIG UniProtKB/TrEMBL
UniProt Secondary A0A480X8G0 UniProtKB/TrEMBL
  K9IVT0 UniProtKB/TrEMBL
VGNC ID VGNC:96454 ENTREZGENE