GSS (glutathione synthetase) - Rat Genome Database

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Gene: GSS (glutathione synthetase) Sus scrofa
Analyze
Symbol: GSS
Name: glutathione synthetase
RGD ID: 14049682
Description: ENCODES a protein that exhibits ATP binding (ortholog); glutathione binding (ortholog); glutathione synthase activity (ortholog); INVOLVED IN glutathione biosynthetic process (ortholog); response to amino acid (ortholog); response to cadmium ion (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; glutamic acid/glutamate metabolic pathway; glutathione metabolic pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); Alzheimer's disease (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN cytosol (inferred); INTERACTS WITH deoxynivalenol; ethanol; folic acid
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,312,720 - 38,342,298 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,316,199 - 38,342,253 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21743,511,098 - 43,539,281 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
deoxynivalenol  (EXP)
ethanol  (EXP)
folic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GSS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,312,720 - 38,342,298 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,316,199 - 38,342,253 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21743,511,098 - 43,539,281 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382034,928,432 - 34,956,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2034,928,432 - 34,956,027 (-)EnsemblGRCh38hg38GRCh38
GRCh372033,516,235 - 33,543,830 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362032,979,897 - 33,007,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 342032,979,897 - 33,007,262NCBI
Celera2030,265,329 - 30,292,695 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,294,556 - 30,321,979 (-)NCBIHuRef
CHM1_12033,417,456 - 33,444,826 (-)NCBICHM1_1
T2T-CHM13v2.02036,649,086 - 36,676,682 (-)NCBIT2T-CHM13v2.0
Gss
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,405,101 - 155,434,730 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,405,101 - 155,434,730 (-)EnsemblGRCm39 Ensembl
GRCm382155,563,181 - 155,592,810 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,563,181 - 155,592,810 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,388,919 - 155,418,442 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,254,624 - 155,284,147 (-)NCBIMGSCv36mm8
Celera2161,495,432 - 161,524,969 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
Gss
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,508,005 - 164,538,343 (-)NCBIGRCr8
mRatBN7.23144,047,849 - 144,078,197 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,047,850 - 144,078,198 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,914,375 - 147,944,469 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,531,652 - 156,561,750 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,271,186 - 154,301,288 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,076,254 - 151,106,557 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,076,254 - 151,106,557 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,443,738 - 157,474,042 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,057,517 - 146,087,820 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,963,138 - 145,993,442 (-)NCBI
Celera3142,772,407 - 142,802,700 (-)NCBICelera
Cytogenetic Map3q42NCBI
Gss
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,427,581 - 26,463,781 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,427,581 - 26,483,380 (+)NCBIChiLan1.0ChiLan1.0
GSS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,661,205 - 40,688,813 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12040,654,308 - 40,682,219 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,256,734 - 31,284,356 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,381,745 - 32,409,327 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,381,745 - 32,409,297 (-)Ensemblpanpan1.1panPan2
GSS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12423,973,807 - 24,000,281 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2423,901,045 - 23,997,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,619,971 - 23,646,466 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,665,657 - 24,692,375 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,665,043 - 24,692,288 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12423,952,937 - 23,979,420 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,048,251 - 24,074,736 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,487,171 - 24,513,688 (-)NCBIUU_Cfam_GSD_1.0
Gss
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,955,595 - 172,983,992 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,765,610 - 5,793,567 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,765,637 - 5,793,951 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1239,230,629 - 39,258,511 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl239,230,487 - 39,254,648 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605087,554,278 - 87,582,240 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gss
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248424,446,721 - 4,478,450 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248424,445,015 - 4,470,124 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GSS
748 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 3 2 5 2 1
Low 7 4 3 2 18 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000007972   ⟹   ENSSSCP00000007759
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1738,317,533 - 38,342,298 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053407   ⟹   ENSSSCP00000034338
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1738,312,720 - 38,342,262 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000067800   ⟹   ENSSSCP00000067789
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1738,312,720 - 38,342,262 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000068272   ⟹   ENSSSCP00000065814
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1738,331,691 - 38,342,253 (-)Ensembl
RefSeq Acc Id: NM_001244625   ⟹   NP_001231554
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,316,199 - 38,342,253 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001231554   ⟸   NM_001244625
- UniProtKB: A0A8D1TEU2 (UniProtKB/TrEMBL),   A0A286ZRS0 (UniProtKB/TrEMBL),   A0A4X1T7V5 (UniProtKB/TrEMBL),   A0A8D1Z3Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000065814   ⟸   ENSSSCT00000068272
RefSeq Acc Id: ENSSSCP00000007759   ⟸   ENSSSCT00000007972
RefSeq Acc Id: ENSSSCP00000067789   ⟸   ENSSSCT00000067800
RefSeq Acc Id: ENSSSCP00000034338   ⟸   ENSSSCT00000053407

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007287 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005002765 UniProtKB/TrEMBL
  ENSSSCG00015069881 UniProtKB/TrEMBL
  ENSSSCG00025046553 UniProtKB/TrEMBL
  ENSSSCG00030024625 UniProtKB/TrEMBL
  ENSSSCG00035063824 UniProtKB/TrEMBL
  ENSSSCG00040056400 UniProtKB/TrEMBL
  ENSSSCG00045011567 UniProtKB/TrEMBL
  ENSSSCG00050038859 UniProtKB/TrEMBL
  ENSSSCG00055020351 UniProtKB/TrEMBL
  ENSSSCG00060076345 UniProtKB/TrEMBL
  ENSSSCG00065049480 UniProtKB/TrEMBL
  ENSSSCG00070006971 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007972.5 UniProtKB/TrEMBL
  ENSSSCT00000053407 ENTREZGENE
  ENSSSCT00000053407.2 UniProtKB/TrEMBL
  ENSSSCT00000067800.1 UniProtKB/TrEMBL
  ENSSSCT00000068272.1 UniProtKB/TrEMBL
  ENSSSCT00005004255.1 UniProtKB/TrEMBL
  ENSSSCT00005004261.1 UniProtKB/TrEMBL
  ENSSSCT00005004275.1 UniProtKB/TrEMBL
  ENSSSCT00005004317.1 UniProtKB/TrEMBL
  ENSSSCT00005004324.1 UniProtKB/TrEMBL
  ENSSSCT00015093808.1 UniProtKB/TrEMBL
  ENSSSCT00015093938.1 UniProtKB/TrEMBL
  ENSSSCT00015094095.1 UniProtKB/TrEMBL
  ENSSSCT00015094315.1 UniProtKB/TrEMBL
  ENSSSCT00015094382.1 UniProtKB/TrEMBL
  ENSSSCT00025063332.1 UniProtKB/TrEMBL
  ENSSSCT00025063589.1 UniProtKB/TrEMBL
  ENSSSCT00025063815.1 UniProtKB/TrEMBL
  ENSSSCT00025063958.1 UniProtKB/TrEMBL
  ENSSSCT00030034461.1 UniProtKB/TrEMBL
  ENSSSCT00030034481.1 UniProtKB/TrEMBL
  ENSSSCT00030034487.1 UniProtKB/TrEMBL
  ENSSSCT00030034494.1 UniProtKB/TrEMBL
  ENSSSCT00035085862.1 UniProtKB/TrEMBL
  ENSSSCT00035085879.1 UniProtKB/TrEMBL
  ENSSSCT00035085887.1 UniProtKB/TrEMBL
  ENSSSCT00035085896.1 UniProtKB/TrEMBL
  ENSSSCT00040076667.1 UniProtKB/TrEMBL
  ENSSSCT00040076706.1 UniProtKB/TrEMBL
  ENSSSCT00040076747.1 UniProtKB/TrEMBL
  ENSSSCT00040076806.1 UniProtKB/TrEMBL
  ENSSSCT00045019875.1 UniProtKB/TrEMBL
  ENSSSCT00045019923.1 UniProtKB/TrEMBL
  ENSSSCT00045019957.1 UniProtKB/TrEMBL
  ENSSSCT00045019986.1 UniProtKB/TrEMBL
  ENSSSCT00050052398.1 UniProtKB/TrEMBL
  ENSSSCT00050052401.1 UniProtKB/TrEMBL
  ENSSSCT00050052404.1 UniProtKB/TrEMBL
  ENSSSCT00050052407.1 UniProtKB/TrEMBL
  ENSSSCT00055039882.1 UniProtKB/TrEMBL
  ENSSSCT00060104761.1 UniProtKB/TrEMBL
  ENSSSCT00060104855.1 UniProtKB/TrEMBL
  ENSSSCT00060104872.1 UniProtKB/TrEMBL
  ENSSSCT00060104911.1 UniProtKB/TrEMBL
  ENSSSCT00065067873.1 UniProtKB/TrEMBL
  ENSSSCT00065067890.1 UniProtKB/TrEMBL
  ENSSSCT00065067893.1 UniProtKB/TrEMBL
  ENSSSCT00065067896.1 UniProtKB/TrEMBL
  ENSSSCT00070013399.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1490.50 UniProtKB/TrEMBL
  3.30.1490.80 UniProtKB/TrEMBL
  3.40.50.1760 UniProtKB/TrEMBL
  ATP-grasp fold, B domain UniProtKB/TrEMBL
InterPro Glutathione_synthase UniProtKB/TrEMBL
  Glutathione_synthase_a-hlx UniProtKB/TrEMBL
  Glutathione_synthase_C_euk UniProtKB/TrEMBL
  Glutathione_synthase_N_euk UniProtKB/TrEMBL
  GSH-S_sub-bd_sf UniProtKB/TrEMBL
  GSH_synth_subst-bd UniProtKB/TrEMBL
  PreATP-grasp_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100152660 UniProtKB/TrEMBL
NCBI Gene GSS ENTREZGENE
PANTHER GLUTATHIONE SYNTHETASE UniProtKB/TrEMBL
  PTHR11130 UniProtKB/TrEMBL
Pfam GSH_synth_ATP UniProtKB/TrEMBL
  GSH_synthase UniProtKB/TrEMBL
PIRSF GSHase UniProtKB/TrEMBL
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/TrEMBL
  SSF52440 UniProtKB/TrEMBL
UniProt A0A286ZRS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T7V5 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QUF4_PIG UniProtKB/TrEMBL
  A0A8D0HRH9_PIG UniProtKB/TrEMBL
  A0A8D0HVX7_PIG UniProtKB/TrEMBL
  A0A8D0HYT4_PIG UniProtKB/TrEMBL
  A0A8D0I250_PIG UniProtKB/TrEMBL
  A0A8D0PSN9_PIG UniProtKB/TrEMBL
  A0A8D1AKI6_PIG UniProtKB/TrEMBL
  A0A8D1H807_PIG UniProtKB/TrEMBL
  A0A8D1H8C4_PIG UniProtKB/TrEMBL
  A0A8D1MC61_PIG UniProtKB/TrEMBL
  A0A8D1MDZ1_PIG UniProtKB/TrEMBL
  A0A8D1TEU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1X2C9_PIG UniProtKB/TrEMBL
  A0A8D1Z3Q1 ENTREZGENE, UniProtKB/TrEMBL
  F1S4X9_PIG UniProtKB/TrEMBL
UniProt Secondary A0A5G2R5F9 UniProtKB/TrEMBL
VGNC ID VGNC:96338 ENTREZGENE