SLC6A6 (solute carrier family 6 member 6) - Rat Genome Database

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Gene: SLC6A6 (solute carrier family 6 member 6) Sus scrofa
Analyze
Symbol: SLC6A6
Name: solute carrier family 6 member 6
RGD ID: 14049537
Description: ENCODES a protein that exhibits beta-alanine transmembrane transporter activity (ortholog); gamma-aminobutyric acid transmembrane transporter activity (ortholog); taurine binding (ortholog); INVOLVED IN beta-alanine transport (ortholog); gamma-aminobutyric acid import (ortholog); import across plasma membrane (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); genetic disease (ortholog); Hypertaurinuric Cardiomyopathy (ortholog); FOUND IN dendrite (ortholog); GABA-ergic synapse (ortholog); neuronal cell body (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: sodium- and chloride-dependent taurine transporter; TAUT
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,094,079 - 70,173,582 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,094,073 - 70,173,581 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21377,572,736 - 77,608,407 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC6A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,094,079 - 70,173,582 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,094,073 - 70,173,581 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21377,572,736 - 77,608,407 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38314,402,576 - 14,489,349 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl314,402,576 - 14,489,349 (+)EnsemblGRCh38hg38GRCh38
GRCh37314,444,076 - 14,530,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36314,419,110 - 14,505,861 (+)NCBINCBI36Build 36hg18NCBI36
Build 34314,419,109 - 14,503,973NCBI
Celera314,382,349 - 14,469,089 (+)NCBICelera
Cytogenetic Map3p25.1ENTREZGENE
HuRef314,380,198 - 14,466,798 (+)NCBIHuRef
CHM1_1314,395,197 - 14,481,943 (+)NCBICHM1_1
T2T-CHM13v2.0314,405,068 - 14,491,755 (+)NCBIT2T-CHM13v2.0
Slc6a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39691,661,031 - 91,736,044 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl691,661,034 - 91,736,047 (+)EnsemblGRCm39 Ensembl
GRCm38691,684,048 - 91,759,063 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,684,053 - 91,759,066 (+)EnsemblGRCm38mm10GRCm38
MGSCv37691,634,061 - 91,709,057 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36691,649,599 - 91,724,567 (+)NCBIMGSCv36mm8
Celera693,577,782 - 93,652,873 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.73NCBI
Slc6a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,752,340 - 125,826,033 (+)NCBIGRCr8
mRatBN7.24124,195,186 - 124,268,880 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4124,195,218 - 124,268,875 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4129,662,156 - 129,732,221 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,436,590 - 125,506,651 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04124,061,127 - 124,131,197 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,638,619 - 123,713,469 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,642,210 - 123,713,464 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04188,172,660 - 188,246,142 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,875,817 - 125,945,795 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14126,120,297 - 126,190,631 (+)NCBI
Celera4113,114,633 - 113,184,598 (+)NCBICelera
Cytogenetic Map4q34NCBI
Slc6a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542917,098,268 - 17,130,433 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542917,097,753 - 17,130,079 (+)NCBIChiLan1.0ChiLan1.0
SLC6A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,383,728 - 14,471,476 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1314,384,213 - 14,476,238 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0314,323,251 - 14,411,949 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1314,663,949 - 14,752,326 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl314,663,955 - 14,752,326 (+)Ensemblpanpan1.1panPan2
SLC6A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1204,544,739 - 4,616,797 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl204,531,771 - 4,620,605 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha204,569,550 - 4,653,981 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0204,553,241 - 4,637,965 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl204,553,024 - 4,638,198 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1204,272,086 - 4,356,526 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0204,594,760 - 4,679,179 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0204,605,361 - 4,690,391 (+)NCBIUU_Cfam_GSD_1.0
Slc6a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,633,842 - 18,667,901 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936602233,753 - 274,982 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12250,344,781 - 50,431,765 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2250,344,805 - 50,431,766 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041116,063,292 - 116,150,295 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc6a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248721,266,007 - 1,310,361 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248721,266,240 - 1,318,710 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC6A6
1660 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 2 2
Low 8 4 3 3 2 23 3 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000022493   ⟹   ENSSSCP00000019561
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1370,094,079 - 70,173,547 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000047040   ⟹   ENSSSCP00000054025
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1370,094,079 - 70,173,547 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000097844   ⟹   ENSSSCP00000080922
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1370,130,189 - 70,173,582 (-)Ensembl
RefSeq Acc Id: NM_001319102   ⟹   NP_001306031
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11370,097,656 - 70,133,768 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021068501   ⟹   XP_020924160
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11370,094,341 - 70,145,987 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021068502   ⟹   XP_020924161
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11370,094,341 - 70,154,286 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021068503   ⟹   XP_020924162
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11370,094,073 - 70,173,581 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021068504   ⟹   XP_020924163
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11370,094,341 - 70,173,565 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021068505   ⟹   XP_020924164
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11370,094,341 - 70,173,581 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020924162   ⟸   XM_021068503
- Peptide Label: isoform X3
- UniProtKB: A0A4X1U7R8 (UniProtKB/TrEMBL),   W6D969 (UniProtKB/TrEMBL),   F1SPI3 (UniProtKB/TrEMBL),   I3L6B0 (UniProtKB/TrEMBL),   K9J4W3 (UniProtKB/TrEMBL),   A0A287BBX6 (UniProtKB/TrEMBL),   A0A8D0JZK3 (UniProtKB/TrEMBL),   A0A8D1IN11 (UniProtKB/TrEMBL),   A0A4X1U7P4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924164   ⟸   XM_021068505
- Peptide Label: isoform X3
- UniProtKB: A0A4X1U7R8 (UniProtKB/TrEMBL),   W6D969 (UniProtKB/TrEMBL),   F1SPI3 (UniProtKB/TrEMBL),   I3L6B0 (UniProtKB/TrEMBL),   K9J4W3 (UniProtKB/TrEMBL),   A0A287BBX6 (UniProtKB/TrEMBL),   A0A8D0JZK3 (UniProtKB/TrEMBL),   A0A8D1IN11 (UniProtKB/TrEMBL),   A0A4X1U7P4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924163   ⟸   XM_021068504
- Peptide Label: isoform X3
- UniProtKB: A0A4X1U7R8 (UniProtKB/TrEMBL),   W6D969 (UniProtKB/TrEMBL),   F1SPI3 (UniProtKB/TrEMBL),   I3L6B0 (UniProtKB/TrEMBL),   K9J4W3 (UniProtKB/TrEMBL),   A0A287BBX6 (UniProtKB/TrEMBL),   A0A8D0JZK3 (UniProtKB/TrEMBL),   A0A8D1IN11 (UniProtKB/TrEMBL),   A0A4X1U7P4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924161   ⟸   XM_021068502
- Peptide Label: isoform X2
- UniProtKB: A0A8D0K734 (UniProtKB/TrEMBL),   A0A287BBX6 (UniProtKB/TrEMBL),   A0A8D0JZK3 (UniProtKB/TrEMBL),   A0A8D1IN11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924160   ⟸   XM_021068501
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U9T0 (UniProtKB/TrEMBL),   A0A8D0LTJ4 (UniProtKB/TrEMBL),   A0A8D0K7D9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001306031   ⟸   NM_001319102
- UniProtKB: K9J4W3 (UniProtKB/TrEMBL),   A0A4X1U7R8 (UniProtKB/TrEMBL),   W6D969 (UniProtKB/TrEMBL),   F1SPI3 (UniProtKB/TrEMBL),   I3L6B0 (UniProtKB/TrEMBL),   A0A287BBX6 (UniProtKB/TrEMBL),   A0A8D0JZK3 (UniProtKB/TrEMBL),   A0A8D1IN11 (UniProtKB/TrEMBL),   A0A4X1U7P4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000054025   ⟸   ENSSSCT00000047040
RefSeq Acc Id: ENSSSCP00000019561   ⟸   ENSSSCT00000022493
RefSeq Acc Id: ENSSSCP00000080922   ⟸   ENSSSCT00000097844


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011600 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005034920 UniProtKB/TrEMBL
  ENSSSCG00015034974 UniProtKB/TrEMBL
  ENSSSCG00025075168 UniProtKB/TrEMBL
  ENSSSCG00030008230 UniProtKB/TrEMBL
  ENSSSCG00035078787 UniProtKB/TrEMBL
  ENSSSCG00040033817 UniProtKB/TrEMBL
  ENSSSCG00045030885 UniProtKB/TrEMBL
  ENSSSCG00055010047 UniProtKB/TrEMBL
  ENSSSCG00060004284 UniProtKB/TrEMBL
  ENSSSCG00065005381 UniProtKB/TrEMBL
  ENSSSCG00070015115 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022493.4 UniProtKB/TrEMBL
  ENSSSCT00000047040 ENTREZGENE
  ENSSSCT00000047040.3 UniProtKB/TrEMBL
  ENSSSCT00000097844.1 UniProtKB/TrEMBL
  ENSSSCT00005055664.1 UniProtKB/TrEMBL
  ENSSSCT00005055679.1 UniProtKB/TrEMBL
  ENSSSCT00005055684.1 UniProtKB/TrEMBL
  ENSSSCT00005055688.1 UniProtKB/TrEMBL
  ENSSSCT00005055724.1 UniProtKB/TrEMBL
  ENSSSCT00005055767.1 UniProtKB/TrEMBL
  ENSSSCT00005055813.1 UniProtKB/TrEMBL
  ENSSSCT00005055872.1 UniProtKB/TrEMBL
  ENSSSCT00005055920.1 UniProtKB/TrEMBL
  ENSSSCT00015046522.1 UniProtKB/TrEMBL
  ENSSSCT00015047055.1 UniProtKB/TrEMBL
  ENSSSCT00025103645.1 UniProtKB/TrEMBL
  ENSSSCT00030011187.1 UniProtKB/TrEMBL
  ENSSSCT00035107605.1 UniProtKB/TrEMBL
  ENSSSCT00040045548.1 UniProtKB/TrEMBL
  ENSSSCT00045052667.1 UniProtKB/TrEMBL
  ENSSSCT00045052845.1 UniProtKB/TrEMBL
  ENSSSCT00055019676.1 UniProtKB/TrEMBL
  ENSSSCT00055019738.1 UniProtKB/TrEMBL
  ENSSSCT00055019775.1 UniProtKB/TrEMBL
  ENSSSCT00055019817.1 UniProtKB/TrEMBL
  ENSSSCT00060005313.1 UniProtKB/TrEMBL
  ENSSSCT00065007280.1 UniProtKB/TrEMBL
  ENSSSCT00070029853.1 UniProtKB/TrEMBL
  ENSSSCT00070029877.1 UniProtKB/TrEMBL
  ENSSSCT00070029884.1 UniProtKB/TrEMBL
  ENSSSCT00070029890.1 UniProtKB/TrEMBL
  ENSSSCT00070029906.1 UniProtKB/TrEMBL
  ENSSSCT00070029921.1 UniProtKB/TrEMBL
InterPro Na/ntran_symport UniProtKB/TrEMBL
  Na/ntran_symport_taurine UniProtKB/TrEMBL
  SNS_sf UniProtKB/TrEMBL
KEGG Report ssc:106504129 UniProtKB/TrEMBL
NCBI Gene SLC6A6 ENTREZGENE
PANTHER PTHR11616 UniProtKB/TrEMBL
  SODIUM- AND CHLORIDE-DEPENDENT TAURINE TRANSPORTER UniProtKB/TrEMBL
Pfam SNF UniProtKB/TrEMBL
PRINTS NANEUSMPORT UniProtKB/TrEMBL
  TAUTRANSPORT UniProtKB/TrEMBL
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_2 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF161070 UniProtKB/TrEMBL
UniProt A0A287BBX6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U5I3_PIG UniProtKB/TrEMBL
  A0A4X1U7P4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U7R8 ENTREZGENE
  A0A4X1U9T0 ENTREZGENE, UniProtKB/TrEMBL
  A0A5K1V0Y8_PIG UniProtKB/TrEMBL
  A0A8D0JZK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K032_PIG UniProtKB/TrEMBL
  A0A8D0K734 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K788_PIG UniProtKB/TrEMBL
  A0A8D0K7D9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LTJ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IN11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FP17_PIG UniProtKB/TrEMBL
  F1SPI3 ENTREZGENE
  I3L6B0 ENTREZGENE
  K9J4W3 ENTREZGENE, UniProtKB/TrEMBL
  W6D969 ENTREZGENE
UniProt Secondary A0A4X1U7R8 UniProtKB/TrEMBL
  F1SPI3 UniProtKB/TrEMBL
  I3L6B0 UniProtKB/TrEMBL
  W6D969 UniProtKB/TrEMBL
VGNC ID VGNC:93166 ENTREZGENE