B3GNT9 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9) - Rat Genome Database

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Gene: B3GNT9 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9) Sus scrofa
Analyze
Symbol: B3GNT9
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
RGD ID: 14049375
Description: ENCODES a protein that exhibits hexosyltransferase activity (inferred); INVOLVED IN protein glycosylation (inferred); ASSOCIATED WITH rheumatoid arthritis (ortholog); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,792,133 - 27,795,361 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,791,387 - 27,797,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
B3GNT9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,792,133 - 27,795,361 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,791,387 - 27,797,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
B3GNT9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1667,148,104 - 67,150,998 (-)EnsemblGRCh38hg38GRCh38
GRCh381667,148,104 - 67,150,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371667,182,007 - 67,184,901 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,739,506 - 65,742,403 (-)NCBINCBI36hg18NCBI36
Celera1651,690,248 - 51,693,145 (-)NCBI
Cytogenetic Map16q22.1NCBI
HuRef1653,055,522 - 53,058,419 (-)NCBIHuRef
CHM1_11668,589,324 - 68,592,221 (-)NCBICHM1_1
B3gnt9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,979,270 - 105,981,895 (-)NCBIGRCm39mm39
GRCm39 Ensembl8105,979,270 - 105,981,785 (-)Ensembl
GRCm388105,252,638 - 105,255,250 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,252,638 - 105,255,153 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,776,538 - 107,779,051 (-)NCBIGRCm37mm9NCBIm37
MGSCv368108,141,768 - 108,144,282 (-)NCBImm8
Celera8109,475,421 - 109,477,934 (-)NCBICelera
Cytogenetic Map8D3NCBI
B3gnt9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21933,129,740 - 33,134,048 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1933,128,142 - 33,132,344 (-)Ensembl
Rnor_6.01937,208,061 - 37,212,400 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,208,825 - 37,210,412 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,073,878 - 48,077,216 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,067,447 - 35,068,901 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11935,072,327 - 35,073,782 (-)NCBI
Celera1932,558,918 - 32,560,795 (-)NCBICelera
Cytogenetic Map19q11NCBI
B3gnt9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554849,462,517 - 9,467,314 (+)NCBIChiLan1.0ChiLan1.0
B3GNT9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11666,882,780 - 66,885,891 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,883,954 - 66,885,162 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01647,493,804 - 47,497,908 (-)NCBIMhudiblu_PPA_v0panPan3
B3GNT9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,212,940 - 82,215,918 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,212,922 - 82,214,679 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha582,201,546 - 82,204,552 (+)NCBI
ROS_Cfam_1.0582,647,250 - 82,650,254 (+)NCBI
UMICH_Zoey_3.1582,473,319 - 82,476,321 (+)NCBI
UNSW_CanFamBas_1.0582,158,688 - 82,161,653 (+)NCBI
UU_Cfam_GSD_1.0582,798,151 - 82,801,155 (+)NCBI
B3gnt9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,958,270 - 41,965,471 (+)NCBI
SpeTri2.0NW_00493647517,624,327 - 17,627,944 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,305,875 - 60,309,264 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl560,306,893 - 60,308,101 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604723,057,772 - 23,061,392 (+)NCBIVero_WHO_p1.0
B3gnt9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474619,165,895 - 19,170,539 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 9 4 3 4 2 22 2 3 3
Below cutoff 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000048334   ⟹   ENSSSCP00000033273
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl627,792,133 - 27,795,361 (-)Ensembl
RefSeq Acc Id: XM_021094042   ⟹   XP_020949701
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1627,792,122 - 27,797,458 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094043   ⟹   XP_020949702
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1627,791,387 - 27,796,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094044   ⟹   XP_020949703
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1627,791,387 - 27,796,275 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020949701 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949702 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949703 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020949703   ⟸   XM_021094044
- Sequence:
RefSeq Acc Id: XP_020949702   ⟸   XM_021094043
- Sequence:
RefSeq Acc Id: XP_020949701   ⟸   XM_021094042
- Sequence:
RefSeq Acc Id: ENSSSCP00000033273   ⟸   ENSSSCT00000048334


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040139 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000033273 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000048334 ENTREZGENE, UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
NCBI Gene B3GNT9 ENTREZGENE
PANTHER PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt A0A286ZNW2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85728 ENTREZGENE