MYPOP (Myb related transcription factor, partner of profilin) - Rat Genome Database

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Gene: MYPOP (Myb related transcription factor, partner of profilin) Sus scrofa
Analyze
Symbol: MYPOP
Name: Myb related transcription factor, partner of profilin
RGD ID: 14047361
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myb-related transcription factor, partner of profilin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,203,703 - 52,212,163 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,203,090 - 52,212,202 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,465,792 - 47,474,019 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MYPOP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,203,703 - 52,212,163 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,203,090 - 52,212,202 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,465,792 - 47,474,019 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYPOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,890,023 - 45,902,613 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,890,023 - 45,902,613 (-)EnsemblGRCh38hg38GRCh38
GRCh371946,393,281 - 46,405,871 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,085,121 - 51,097,702 (-)NCBINCBI36Build 36hg18NCBI36
Celera1943,198,306 - 43,210,886 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,822,075 - 42,834,207 (-)NCBIHuRef
CHM1_11946,395,776 - 46,408,357 (-)NCBICHM1_1
T2T-CHM13v2.01948,717,466 - 48,730,055 (-)NCBIT2T-CHM13v2.0
Mypop
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,725,230 - 18,735,691 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,725,170 - 18,735,691 (+)EnsemblGRCm39 Ensembl
GRCm38718,991,240 - 19,001,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl718,991,245 - 19,001,766 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,576,594 - 19,587,115 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,149,839 - 18,160,285 (+)NCBIMGSCv36mm8
Celera716,403,131 - 16,413,671 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.45NCBI
Mypop
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,767,747 - 87,778,602 (+)NCBIGRCr8
mRatBN7.2178,639,699 - 78,650,555 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,639,769 - 78,650,552 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,028,700 - 84,039,592 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,586,291 - 92,597,187 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,783,800 - 85,794,692 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,898,492 - 79,909,336 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,898,551 - 79,911,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,159,039 - 81,169,786 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,345,206 - 78,355,988 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera173,105,856 - 73,116,631 (+)NCBICelera
Cytogenetic Map1q21NCBI
Mypop
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574312,744 - 325,288 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955574316,188 - 325,288 (-)NCBIChiLan1.0ChiLan1.0
MYPOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,056,027 - 52,069,747 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,927,411 - 53,940,196 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,899,792 - 42,912,256 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,436,544 - 51,447,385 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1951,437,143 - 51,447,333 (-)Ensemblpanpan1.1panPan2
MYPOP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,727,852 - 109,736,825 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,728,192 - 109,735,402 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,214,046 - 109,222,187 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,264,878 - 110,269,607 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11109,937,476 - 109,945,612 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,572,184 - 109,580,328 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,440,947 - 110,449,088 (+)NCBIUU_Cfam_GSD_1.0
Mypop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,865,862 - 17,877,975 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367062,213,205 - 2,224,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYPOP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,335,878 - 39,348,846 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl639,336,480 - 39,347,355 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607318,978,069 - 18,990,868 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mypop
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,317,845 - 7,327,646 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248327,316,044 - 7,325,720 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MYPOP
61 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system
High
Medium
Low 2 4
Below cutoff 2 1 3 1 16 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000036700   ⟹   ENSSSCP00000039197
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl652,203,703 - 52,212,163 (-)Ensembl
RefSeq Acc Id: XM_013998525   ⟹   XP_013853979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1652,203,090 - 52,212,202 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013853979   ⟸   XM_013998525
- UniProtKB: A0A8D0RAN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039197   ⟸   ENSSSCT00000036700
Protein Domains
Myb-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038739 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00025017195 UniProtKB/TrEMBL
  ENSSSCG00030054918 UniProtKB/TrEMBL
  ENSSSCG00035061998 UniProtKB/TrEMBL
  ENSSSCG00040065122 UniProtKB/TrEMBL
  ENSSSCG00045008624 UniProtKB/TrEMBL
  ENSSSCG00050007420 UniProtKB/TrEMBL
  ENSSSCG00055008076 UniProtKB/TrEMBL
  ENSSSCG00060014831 UniProtKB/TrEMBL
  ENSSSCG00065003986 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000036700.3 UniProtKB/TrEMBL
  ENSSSCT00025023212.1 UniProtKB/TrEMBL
  ENSSSCT00030076489.1 UniProtKB/TrEMBL
  ENSSSCT00035083331.1 UniProtKB/TrEMBL
  ENSSSCT00040088902.1 UniProtKB/TrEMBL
  ENSSSCT00045014520.1 UniProtKB/TrEMBL
  ENSSSCT00050010130.1 UniProtKB/TrEMBL
  ENSSSCT00055015743.1 UniProtKB/TrEMBL
  ENSSSCT00060019669.1 UniProtKB/TrEMBL
  ENSSSCT00065005471.1 UniProtKB/TrEMBL
InterPro Myb_DNA-bind_5 UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
NCBI Gene MYPOP ENTREZGENE
PANTHER MYB-RELATED TRANSCRIPTION FACTOR, PARTNER OF PROFILIN UniProtKB/TrEMBL
  MYB-RELATED TRANSCRIPTION FACTOR, PARTNER OF PROFILIN UniProtKB/TrEMBL
Pfam Myb_DNA-bind_5 UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE MYB_LIKE UniProtKB/TrEMBL
SMART SANT UniProtKB/TrEMBL
UniProt A0A287A612_PIG UniProtKB/TrEMBL
  A0A8D0RAN0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90545 ENTREZGENE