BPIFA1 (BPI fold containing family A member 1) - Rat Genome Database

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Gene: BPIFA1 (BPI fold containing family A member 1) Sus scrofa
Analyze
Symbol: BPIFA1
Name: BPI fold containing family A member 1
RGD ID: 14046367
Description: ENCODES a protein that exhibits lipid binding (inferred); INVOLVED IN antibacterial humoral response (ortholog); innate immune response (ortholog); killing of cells of other organism (ortholog); ASSOCIATED WITH fetal alcohol spectrum disorder (ortholog); Inflammation (ortholog); FOUND IN extracellular space (ortholog); microvillus (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: BPI fold-containing family A member 1; lung and nasal epithelium carcinoma-associated protein; palate lung and nasal epithelium clone protein; palate, lung and nasal epithelium associated; palate, lung and nasal epithelium carcinoma associated protein; PLUNC; protein Plunc; SPLUNC1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,754,498 - 36,761,621 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11736,754,498 - 36,761,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21741,704,827 - 41,711,955 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:14681463   PMID:15777615   PMID:17145712   PMID:21787330   PMID:21787333  


Genomics

Comparative Map Data
BPIFA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,754,498 - 36,761,621 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11736,754,498 - 36,761,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21741,704,827 - 41,711,955 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BPIFA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2033,235,995 - 33,243,311 (+)EnsemblGRCh38hg38GRCh38
GRCh382033,235,996 - 33,243,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372031,823,802 - 31,831,112 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362031,287,463 - 31,294,773 (+)NCBINCBI36hg18NCBI36
Build 342031,287,462 - 31,294,772NCBI
Celera2028,577,699 - 28,585,012 (+)NCBI
Cytogenetic Map20q11.21NCBI
HuRef2028,611,406 - 28,618,725 (+)NCBIHuRef
CHM1_12031,724,914 - 31,732,227 (+)NCBICHM1_1
Bpifa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392153,984,800 - 153,991,137 (+)NCBIGRCm39mm39
GRCm39 Ensembl2153,984,800 - 153,991,139 (+)Ensembl
GRCm382154,142,880 - 154,149,217 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2154,142,880 - 154,149,219 (+)EnsemblGRCm38mm10GRCm38
MGSCv372153,968,616 - 153,974,953 (+)NCBIGRCm37mm9NCBIm37
MGSCv362153,834,326 - 153,840,658 (+)NCBImm8
Celera2160,065,103 - 160,071,425 (+)NCBICelera
Cytogenetic Map2H1NCBI
Bpifa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23142,627,810 - 142,633,553 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3142,627,810 - 142,633,552 (+)Ensembl
Rnor_6.03149,624,867 - 149,630,610 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3149,624,712 - 149,630,613 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03156,002,440 - 156,008,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43144,529,855 - 144,535,598 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13144,435,476 - 144,441,219 (+)NCBI
Celera3141,369,225 - 141,374,968 (+)NCBICelera
Cytogenetic Map3q41NCBI
Bpifa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542228,063,077 - 28,069,939 (-)NCBIChiLan1.0ChiLan1.0
BPIFA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12030,641,138 - 30,649,515 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2030,642,191 - 30,649,515 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02029,524,619 - 29,532,996 (+)NCBIMhudiblu_PPA_v0panPan3
BPIFA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,475,407 - 22,482,666 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,457,631 - 22,482,661 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2422,121,008 - 22,128,270 (+)NCBI
ROS_Cfam_1.02423,161,382 - 23,168,638 (+)NCBI
UMICH_Zoey_3.12422,436,703 - 22,443,958 (+)NCBI
UNSW_CanFamBas_1.02422,546,960 - 22,554,221 (+)NCBI
UU_Cfam_GSD_1.02422,978,118 - 22,985,370 (+)NCBI
BPIFA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1237,571,577 - 37,579,529 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl237,573,837 - 37,578,667 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605089,321,049 - 89,329,502 (-)NCBIVero_WHO_p1.0
Bpifa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248426,024,460 - 6,031,718 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system hemolymphoid system nervous system respiratory system
High
Medium
Low 1 1 2 2
Below cutoff 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001005727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005672834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005672835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_308742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK238135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK238161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK238256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK238296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK350801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK350937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY733063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY733064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU467098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000007944   ⟹   ENSSSCP00000007731
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1736,754,615 - 36,761,621 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000033126   ⟹   ENSSSCP00000030681
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1736,754,498 - 36,761,621 (+)Ensembl
RefSeq Acc Id: NM_001005727   ⟹   NP_001005727
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11736,756,210 - 36,760,867 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005672834   ⟹   XP_005672891
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11736,754,498 - 36,761,622 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005672835   ⟹   XP_005672892
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11736,754,623 - 36,761,622 (+)NCBI
Sequence:
RefSeq Acc Id: XR_308742
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11736,754,498 - 36,761,622 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001005727 (Get FASTA)   NCBI Sequence Viewer  
  XP_005672891 (Get FASTA)   NCBI Sequence Viewer  
  XP_005672892 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAU43633 (Get FASTA)   NCBI Sequence Viewer  
  AAU43634 (Get FASTA)   NCBI Sequence Viewer  
  Q5XW65 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005672891   ⟸   XM_005672834
- Peptide Label: isoform X1
- UniProtKB: K7GS01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005672892   ⟸   XM_005672835
- Peptide Label: isoform X1
- UniProtKB: K7GS01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001005727   ⟸   NM_001005727
- Peptide Label: precursor
- UniProtKB: Q5XW65 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSSSCP00000007731   ⟸   ENSSSCT00000007944
RefSeq Acc Id: ENSSSCP00000030681   ⟸   ENSSSCT00000033126
Protein Domains
BPI1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007260 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070005606 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000007731 UniProtKB/TrEMBL
  ENSSSCP00000030681 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070008761 UniProtKB/TrEMBL
  ENSSSCP00070008766 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007944 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000033126 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070010652 UniProtKB/TrEMBL
  ENSSSCT00070010657 UniProtKB/TrEMBL
InterPro Bactericidal_perm-incr_a/b_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BPIFA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:449524 UniProtKB/Swiss-Prot
NCBI Gene BPIFA1 ENTREZGENE
PANTHER PTHR47015:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LBP_BPI_CETP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55394 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1SZL2_PIG UniProtKB/TrEMBL
  A0A4X1T0L3_PIG UniProtKB/TrEMBL
  BPIA1_PIG UniProtKB/Swiss-Prot
  F1S505_PIG UniProtKB/TrEMBL
  K7GS01 ENTREZGENE, UniProtKB/TrEMBL
  Q5XW65 ENTREZGENE
UniProt Secondary K7GLE4 UniProtKB/TrEMBL
  Q5XW64 UniProtKB/Swiss-Prot
VGNC ID VGNC:95649 ENTREZGENE