ST3GAL5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5) - Rat Genome Database

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Gene: ST3GAL5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5) Sus scrofa
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Symbol: ST3GAL5
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 5
RGD ID: 14045921
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); lactosylceramide alpha-2,3-sialyltransferase activity (inferred); sialyltransferase activity (inferred); INVOLVED IN protein glycosylation (inferred); ASSOCIATED WITH CD8 Deficiency, Familial (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lactosylceramide alpha-2,3-sialyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,862,987 - 58,919,552 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,862,984 - 58,919,554 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2361,761,954 - 61,767,961 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ST3GAL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,862,987 - 58,919,552 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,862,984 - 58,919,554 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2361,761,954 - 61,767,961 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,837,120 - 85,889,034 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl285,837,120 - 85,905,199 (-)EnsemblGRCh38hg38GRCh38
GRCh37286,064,243 - 86,116,157 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,919,782 - 85,969,668 (-)NCBINCBI36Build 36hg18NCBI36
Build 34285,977,928 - 86,027,795NCBI
Celera285,894,364 - 85,944,312 (-)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,963,652 - 86,013,554 (-)NCBIHuRef
CHM1_1285,995,811 - 86,045,674 (-)NCBICHM1_1
T2T-CHM13v2.0285,839,198 - 85,891,111 (-)NCBIT2T-CHM13v2.0
St3gal5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,074,555 - 72,131,555 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,074,576 - 72,131,555 (+)EnsemblGRCm39 Ensembl
GRCm38672,097,552 - 72,154,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,097,592 - 72,154,571 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,047,607 - 72,104,564 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,027,122 - 72,084,079 (+)NCBIMGSCv36mm8
Celera674,186,058 - 74,242,678 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.24NCBI
St3gal5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84105,692,840 - 105,750,774 (+)NCBIGRCr8
mRatBN7.24104,134,613 - 104,192,558 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,134,613 - 104,192,558 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4109,515,323 - 109,573,056 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04105,290,437 - 105,348,173 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04103,904,491 - 103,962,253 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0499,937,499 - 99,999,905 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl499,937,558 - 99,999,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04164,713,194 - 164,769,525 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,373,385 - 105,432,192 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14105,618,018 - 105,676,673 (+)NCBI
Celera493,289,811 - 93,346,557 (+)NCBICelera
Cytogenetic Map4q32NCBI
St3gal5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,692,182 - 1,732,595 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,692,182 - 1,729,206 (+)NCBIChiLan1.0ChiLan1.0
ST3GAL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,480,051 - 40,546,548 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,482,804 - 40,549,310 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A85,888,895 - 85,938,944 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A87,437,873 - 87,485,660 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,437,874 - 87,503,625 (-)Ensemblpanpan1.1panPan2
ST3GAL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,154,408 - 39,205,661 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,153,469 - 39,204,873 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1738,839,485 - 38,890,646 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01739,888,484 - 39,939,963 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1739,888,415 - 39,939,989 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11739,055,842 - 39,107,115 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,091,990 - 39,143,194 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01739,478,527 - 39,530,011 (+)NCBIUU_Cfam_GSD_1.0
St3gal5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,362,332 - 79,399,787 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,482,002 - 1,499,064 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,458,637 - 1,496,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,235,682 - 21,314,541 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1421,287,241 - 21,313,558 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604591,166,353 - 91,219,731 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St3gal5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474917,312,152 - 17,355,578 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474917,312,144 - 17,354,906 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ST3GAL5
1638 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 3 12
Low 8 3 3 2 2 11 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000009009   ⟹   ENSSSCP00000008783
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl358,862,987 - 58,918,066 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000046848   ⟹   ENSSSCP00000056922
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl358,862,987 - 58,919,552 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000052633   ⟹   ENSSSCP00000056656
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl358,863,096 - 58,919,532 (+)Ensembl
RefSeq Acc Id: XM_021087293   ⟹   XP_020942952
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1358,862,984 - 58,919,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087294   ⟹   XP_020942953
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1358,862,995 - 58,919,544 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020942952   ⟸   XM_021087293
- Peptide Label: isoform X1
- UniProtKB: A0A4X1W797 (UniProtKB/TrEMBL),   A0A287BK78 (UniProtKB/TrEMBL),   A0A8D0YFG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942953   ⟸   XM_021087294
- Peptide Label: isoform X2
- UniProtKB: A0A8D0TPG5 (UniProtKB/TrEMBL),   A0A8D0VH44 (UniProtKB/TrEMBL),   A0A8D0YCF8 (UniProtKB/TrEMBL),   A0A8D0J540 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000008783   ⟸   ENSSSCT00000009009
RefSeq Acc Id: ENSSSCP00000056656   ⟸   ENSSSCT00000052633
RefSeq Acc Id: ENSSSCP00000056922   ⟸   ENSSSCT00000046848


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008227 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005021960 UniProtKB/TrEMBL
  ENSSSCG00015033939 UniProtKB/TrEMBL
  ENSSSCG00025076509 UniProtKB/TrEMBL
  ENSSSCG00030009489 UniProtKB/TrEMBL
  ENSSSCG00035000367 UniProtKB/TrEMBL
  ENSSSCG00040000322 UniProtKB/TrEMBL
  ENSSSCG00045028374 UniProtKB/TrEMBL
  ENSSSCG00055020476 UniProtKB/TrEMBL
  ENSSSCG00060048779 UniProtKB/TrEMBL
  ENSSSCG00065040441 UniProtKB/TrEMBL
  ENSSSCG00070029038 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009009.5 UniProtKB/TrEMBL
  ENSSSCT00000046848 ENTREZGENE
  ENSSSCT00000046848.3 UniProtKB/TrEMBL
  ENSSSCT00000052633.3 UniProtKB/TrEMBL
  ENSSSCT00005034674.1 UniProtKB/TrEMBL
  ENSSSCT00005034694.1 UniProtKB/TrEMBL
  ENSSSCT00005034748.1 UniProtKB/TrEMBL
  ENSSSCT00015045109.1 UniProtKB/TrEMBL
  ENSSSCT00015045427.1 UniProtKB/TrEMBL
  ENSSSCT00025105982.1 UniProtKB/TrEMBL
  ENSSSCT00025105994.1 UniProtKB/TrEMBL
  ENSSSCT00030012993.1 UniProtKB/TrEMBL
  ENSSSCT00030013005.1 UniProtKB/TrEMBL
  ENSSSCT00035000409.1 UniProtKB/TrEMBL
  ENSSSCT00035000411.1 UniProtKB/TrEMBL
  ENSSSCT00035000416.1 UniProtKB/TrEMBL
  ENSSSCT00040000363.1 UniProtKB/TrEMBL
  ENSSSCT00040000382.1 UniProtKB/TrEMBL
  ENSSSCT00040000396.1 UniProtKB/TrEMBL
  ENSSSCT00045048351.1 UniProtKB/TrEMBL
  ENSSSCT00045048460.1 UniProtKB/TrEMBL
  ENSSSCT00045048530.1 UniProtKB/TrEMBL
  ENSSSCT00055040302.1 UniProtKB/TrEMBL
  ENSSSCT00055040387.1 UniProtKB/TrEMBL
  ENSSSCT00055040500.1 UniProtKB/TrEMBL
  ENSSSCT00055040565.1 UniProtKB/TrEMBL
  ENSSSCT00060066268.1 UniProtKB/TrEMBL
  ENSSSCT00060066272.1 UniProtKB/TrEMBL
  ENSSSCT00060066278.1 UniProtKB/TrEMBL
  ENSSSCT00065055277.1 UniProtKB/TrEMBL
  ENSSSCT00065055285.1 UniProtKB/TrEMBL
  ENSSSCT00065055286.1 UniProtKB/TrEMBL
  ENSSSCT00070058233.1 UniProtKB/TrEMBL
  ENSSSCT00070058234.1 UniProtKB/TrEMBL
  ENSSSCT00070058235.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
NCBI Gene ST3GAL5 ENTREZGENE
PANTHER LACTOSYLCERAMIDE ALPHA-2,3-SIALYLTRANSFERASE UniProtKB/TrEMBL
  SIALYLTRANSFERASE UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A287BJ72_PIG UniProtKB/TrEMBL
  A0A287BK78 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W026_PIG UniProtKB/TrEMBL
  A0A4X1W4W1_PIG UniProtKB/TrEMBL
  A0A4X1W797 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J369_PIG UniProtKB/TrEMBL
  A0A8D0J540 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LME7_PIG UniProtKB/TrEMBL
  A0A8D0TPG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VH44 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VHB9_PIG UniProtKB/TrEMBL
  A0A8D0YCF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YFG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BL44_PIG UniProtKB/TrEMBL
  A0A8D1BRU4_PIG UniProtKB/TrEMBL
  A0A8D1IFD8_PIG UniProtKB/TrEMBL
  F1SVC2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93505 ENTREZGENE