CRISP3 (cysteine-rich secretory protein 3) - Rat Genome Database

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Gene: CRISP3 (cysteine-rich secretory protein 3) Sus scrofa
Analyze
Symbol: CRISP3
Name: cysteine-rich secretory protein 3 (Ensembl:cysteine rich secretory protein 3)
RGD ID: 14045817
Description: ASSOCIATED WITH ectopic pregnancy (ortholog); genetic disease (ortholog); Spontaneous Abortions (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred); specific granule (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl743,777,061 - 43,804,549 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1743,777,035 - 43,804,624 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2750,169,210 - 50,196,748 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:18716287   PMID:22301074   PMID:30032202   PMID:38396941  


Genomics

Comparative Map Data
CRISP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl743,777,061 - 43,804,549 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1743,777,035 - 43,804,624 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2750,169,210 - 50,196,748 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRISP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38649,727,376 - 49,744,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl649,727,376 - 49,744,437 (-)EnsemblGRCh38hg38GRCh38
GRCh37649,695,089 - 49,712,101 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36649,803,048 - 49,820,015 (-)NCBINCBI36Build 36hg18NCBI36
Build 34649,803,054 - 49,820,015NCBI
Celera651,251,171 - 51,268,255 (-)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef649,425,404 - 49,442,485 (-)NCBIHuRef
CHM1_1649,698,007 - 49,715,084 (-)NCBICHM1_1
T2T-CHM13v2.0649,569,352 - 49,586,363 (-)NCBIT2T-CHM13v2.0
Crisp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391740,604,649 - 40,630,098 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1740,604,649 - 40,630,098 (-)EnsemblGRCm39 Ensembl
GRCm381740,293,758 - 40,319,207 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1740,293,758 - 40,319,207 (-)EnsemblGRCm38mm10GRCm38
MGSCv371740,430,707 - 40,456,156 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361739,757,233 - 39,782,674 (-)NCBIMGSCv36mm8
Celera1743,700,420 - 43,725,911 (-)NCBICelera
Cytogenetic Map17B2NCBI
cM Map1719.47NCBI
Crisp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8927,928,591 - 27,969,205 (+)NCBIGRCr8
mRatBN7.2920,432,051 - 20,472,663 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl920,450,908 - 20,472,658 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx928,962,775 - 29,003,213 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0934,065,231 - 34,105,840 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0932,376,050 - 32,416,659 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0924,047,405 - 24,088,066 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl924,066,303 - 24,088,064 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0922,907,619 - 22,948,639 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4916,654,563 - 16,698,037 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1916,651,884 - 16,695,359 (+)NCBI
Celera918,080,027 - 18,115,374 (+)NCBICelera
Cytogenetic Map9q13NCBI
CRISP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2564,211,609 - 64,228,607 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1660,077,260 - 60,094,258 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0649,297,914 - 49,314,978 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1650,558,388 - 50,575,431 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl650,559,742 - 50,568,518 (-)Ensemblpanpan1.1panPan2
LOC103221388
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11722,658,296 - 22,676,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1722,659,652 - 22,677,137 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604449,705,747 - 49,713,767 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in CRISP3
943 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium 1
Low 1 3
Below cutoff 1 2 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000029500   ⟹   ENSSSCP00000028167
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl743,777,061 - 43,804,549 (-)Ensembl
RefSeq Acc Id: XM_003128432   ⟹   XP_003128480
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1743,777,035 - 43,804,624 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003128480   ⟸   XM_003128432
- UniProtKB: I3LVL5 (UniProtKB/TrEMBL),   A0A4X1V182 (UniProtKB/TrEMBL),   A0A8D1PUK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000028167   ⟸   ENSSSCT00000029500
Protein Domains
ShKT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024347 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005005842 UniProtKB/TrEMBL
  ENSSSCG00015009377 UniProtKB/TrEMBL
  ENSSSCG00025042353 UniProtKB/TrEMBL
  ENSSSCG00030038362 UniProtKB/TrEMBL
  ENSSSCG00035008753 UniProtKB/TrEMBL
  ENSSSCG00040027569 UniProtKB/TrEMBL
  ENSSSCG00050003231 UniProtKB/TrEMBL
  ENSSSCG00055006007 UniProtKB/TrEMBL
  ENSSSCG00060048330 UniProtKB/TrEMBL
  ENSSSCG00065005292 UniProtKB/TrEMBL
  ENSSSCG00070020634 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029500 ENTREZGENE
  ENSSSCT00000029500.3 UniProtKB/TrEMBL
  ENSSSCT00005008875.1 UniProtKB/TrEMBL
  ENSSSCT00015012341.1 UniProtKB/TrEMBL
  ENSSSCT00025057362.1 UniProtKB/TrEMBL
  ENSSSCT00030053388.1 UniProtKB/TrEMBL
  ENSSSCT00035010950.1 UniProtKB/TrEMBL
  ENSSSCT00040036915.1 UniProtKB/TrEMBL
  ENSSSCT00050004258.1 UniProtKB/TrEMBL
  ENSSSCT00055011668.1 UniProtKB/TrEMBL
  ENSSSCT00060065632.1 UniProtKB/TrEMBL
  ENSSSCT00065007174.1 UniProtKB/TrEMBL
  ENSSSCT00070041002.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.740 UniProtKB/TrEMBL
  3.40.33.10 UniProtKB/TrEMBL
InterPro Allrgn_V5/Tpx1 UniProtKB/TrEMBL
  Allrgn_V5/Tpx1_CS UniProtKB/TrEMBL
  CAP_domain UniProtKB/TrEMBL
  CAP_sf UniProtKB/TrEMBL
  Crisp-like_dom UniProtKB/TrEMBL
  Cysteine_rich_secretory UniProtKB/TrEMBL
  SCP_CRISP UniProtKB/TrEMBL
  ShKT_dom UniProtKB/TrEMBL
KEGG Report ssc:100158244 UniProtKB/TrEMBL
NCBI Gene CRISP3 ENTREZGENE
PANTHER CYSTEINE-RICH SECRETORY PROTEIN 3 UniProtKB/TrEMBL
  PTHR10334 UniProtKB/TrEMBL
Pfam CAP UniProtKB/TrEMBL
  Crisp UniProtKB/TrEMBL
PRINTS V5TPXLIKE UniProtKB/TrEMBL
PROSITE CRISP_1 UniProtKB/TrEMBL
  CRISP_2 UniProtKB/TrEMBL
  SHKT UniProtKB/TrEMBL
SMART SCP UniProtKB/TrEMBL
Superfamily-SCOP Crisp domain-like UniProtKB/TrEMBL
  SSF55797 UniProtKB/TrEMBL
UniProt A0A4X1V182 ENTREZGENE
  A0A8D1PUK4 ENTREZGENE, UniProtKB/TrEMBL
  I3LVL5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1V182 UniProtKB/TrEMBL