AKIRIN2 (akirin 2) - Rat Genome Database

Name: AKIRIN2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: AKIRIN2 (akirin 2) Sus scrofa

Analyze

Symbol:

AKIRIN2

Name:

akirin 2

RGD ID:

14044917

Description:

ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN regulation of muscle cell differentiation; cerebral cortex development (ortholog); defense response to bacterium (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neoplasm Metastasis (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription repressor complex (ortholog); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

akirin-2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AKIRIN2 (akirin 2)	HGNC	EggNOG, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Akirin2 (akirin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Akirin2 (akirin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Akirin2 (akirin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AKIRIN2 (akirin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AKIRIN2 (akirin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Akirin2 (akirin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AKIRIN2 (akirin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Akirin2 (akirin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	56,046,327 - 56,070,163 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	56,047,188 - 56,075,342 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	62,790,860 - 62,818,337 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Neoplasm Metastasis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adaptive immune response (IEA)

cerebral cortex development (ISS)

defense response to bacterium (ISS)

embryo development ending in birth or egg hatching (ISO)

innate immune response (IEA)

negative regulation of DNA-templated transcription (ISO)

negative regulation of gene expression (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

nuclear protein quality control by the ubiquitin-proteasome system (ISS)

positive regulation of adaptive immune response (ISS)

positive regulation of B cell activation (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of endopeptidase activity (ISO)

positive regulation of innate immune response (IBA,IEA,ISS)

positive regulation of interleukin-6 production (ISO,ISS)

positive regulation of transcription by RNA polymerase II (IBA,IEA,ISO,ISS)

proteasome localization (ISS)

protein import into nucleus (ISS)

protein transport (IEA)

regulation of muscle cell differentiation (IMP)

response to lipopolysaccharide (ISO)

Cellular Component

chromatin (IBA,IEA)

cytoplasm (IEA)

membrane (IEA)

nucleoplasm (ISO)

nucleus (IBA,IEA,ISS)

transcription repressor complex (ISO)

Molecular Function

enzyme binding (ISO)

identical protein binding (ISO)

protein binding (ISO)

protein-macromolecule adaptor activity (ISS)

transcription coregulator activity (IBA,IEA)

References

Additional References at PubMed

PMID:14681463	PMID:15679890	PMID:17145712	PMID:22537061	PMID:25686036	PMID:28327665	PMID:29685038	PMID:30032202

Genomics

Comparative Map Data

AKIRIN2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	56,046,327 - 56,070,163 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	56,047,188 - 56,075,342 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	62,790,860 - 62,818,337 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AKIRIN2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	87,674,860 - 87,702,233 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	87,674,860 - 87,702,233 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	88,384,578 - 88,411,951 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	88,441,693 - 88,468,645 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	88,441,693 - 88,468,645	NCBI
Celera	6	88,802,600 - 88,830,001 (-)	NCBI		Celera
Cytogenetic Map	6	q15	NCBI
HuRef	6	85,599,770 - 85,627,163 (-)	NCBI		HuRef
CHM1_1	6	88,481,916 - 88,509,380 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	88,883,172 - 88,910,565 (-)	NCBI		T2T-CHM13v2.0

Akirin2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	34,550,615 - 34,566,930 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	34,550,937 - 34,566,908 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	34,550,615 - 34,566,965 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	34,550,937 - 34,566,908 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	34,497,864 - 34,514,157 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	34,739,502 - 34,755,795 (+)	NCBI		MGSCv36	mm8
Celera	4	34,280,341 - 34,296,487 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	16.8	NCBI

Akirin2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	53,897,792 - 53,918,873 (+)	NCBI		GRCr8
mRatBN7.2	5	49,108,231 - 49,122,566 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	49,108,220 - 49,122,568 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	51,301,281 - 51,315,616 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	52,901,514 - 52,915,849 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	52,807,415 - 52,821,750 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	50,001,945 - 50,016,544 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	50,002,184 - 50,016,539 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	54,571,149 - 54,585,491 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	51,152,935 - 51,167,720 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	51,153,288 - 51,167,962 (+)	NCBI
Celera	5	47,859,124 - 47,873,161 (+)	NCBI		Celera
Cytogenetic Map	5	q21	NCBI

Akirin2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	14,600,106 - 14,619,069 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	14,600,106 - 14,619,374 (-)	NCBI	ChiLan1.0	ChiLan1.0

AKIRIN2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	107,754,665 - 107,784,592 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	105,648,490 - 105,677,166 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	85,549,728 - 85,577,114 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	88,829,673 - 88,850,443 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

AKIRIN2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	47,113,856 - 47,132,800 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	47,113,857 - 47,132,555 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	46,920,926 - 46,940,125 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	47,919,212 - 47,938,390 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	47,888,213 - 47,938,830 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	47,211,733 - 47,230,919 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	47,138,797 - 47,157,966 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	47,328,532 - 47,347,744 (-)	NCBI		UU_Cfam_GSD_1.0

Akirin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	82,248,594 - 82,274,206 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936510	4,216,955 - 4,221,962 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936510	4,216,893 - 4,221,962 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AKIRIN2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	12,146,228 - 12,175,198 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	188,401,656 - 188,427,615 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Akirin2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624799	6,625,549 - 6,644,286 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624799	6,620,102 - 6,644,286 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in AKIRIN2
497 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	8	2	1	5	2	18	2	3	3
Low	2	2	2			5
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001278752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021074590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021074638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK350524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK393334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY610379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01017337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JN227885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KC140110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000004762 ⟹ ENSSSCP00000004651

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	56,046,327 - 56,070,163 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000051283 ⟹ ENSSSCP00000054520

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	56,043,345 - 56,070,134 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000088888 ⟹ ENSSSCP00000060200

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	56,047,930 - 56,070,134 (-)	Ensembl

RefSeq Acc Id:

NM_001278752 ⟹ NP_001265681

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	56,047,871 - 56,069,582 (-)	NCBI

Sequence:

show sequence

ATGGCGTGCGGAGCTACTCTGAAAAGGACTCTGGATTTCGACCCGCTGCTGAGCCCAGCGTCCC
CAAAGCGGAGGCGATGTGCGCCATTGTCGGCGCCCACCTCGGCTGCCGCCTCCCCGTCGTCGGC
GGCCGCGGCCACAGCCGCCTCCTTTTCGGCCGCCGCCGCCTCGCCGCAGAAGTATCTCCGAATG
GAGCCGTCTCCCTTCGGCGACGTCTCCTCCCGCCTCACCACAGAACAAATTCTGTACAACATAA
AACAAGAGTATAAGCGCATGCAGAAGAGAAGACATTTAGAAACTAGTTTCCAACAGACAGATCC
ATGCTGTACTTCTGATGCACAGCCACATGCATTTCTCCTCAGTGGACCAGCTTCACCAGGGACT
CCATCAGCAACGTCCTCACCATTAAAAAAAGAACAGCCCTTATTCACCCTACGGCAGGTTGGGA
TGATCTGTGAACGTTTATTGAAAGAACGTGAAGAGAAAGTTCGAGAAGAGTATGAAGAAATACT
GAACACAAAACTTGCAGAACAATATGATGCATTTGTGAAGTTTACGCATGATCAAATAATGCGA
CGATATGGAGAACAGCCTGCTAGTTATGTTTCATGA

hide sequence

RefSeq Acc Id:

XM_021074590 ⟹ XP_020930249

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	56,047,188 - 56,070,182 (-)	NCBI

Sequence:

show sequence

ATCGGCGGCGTTGTTATTGACGCCATATTGGGGCCGGCGGCGGGTGGAAGAGTCGTACAGTGGA
GGGGTTAGCGGCTGGACGTGTTCGCCTGAGCTCCTGCCGCCGCCGCCACCTCACAATCCTGCCG
CATCGACCGCCGCTCTCTAGCTTCTGACCCTGTCTCGACGGGGGGCGGGGGTCTTAGGAGCCGT
GTCCCAGCCTCACACCTCACGGGGCTGGTATCGACTTCTGAAGGAACCGGTCTCAGCGCAGGAG
CGCCTCGGGCGCGGCGCAAAGCCCGAACGGACGGCGGGGGCGGCTGGAGCCTCTCCCGGGGGAG
CCGCGCCTGAGGAGGCGGAAGAGCCCCCCTGACGCGGCCGGCGTGAGCTGCTGCCACCGCCCCT
CCCGTTCTCGCCCCGGCCGGCCTGGGCCACTGCCCCTGCCGCTGAGGCGGCGGCGGCGGCGGCT
CTGCTCCCCTCGTCGGCGCTCCGCCATCCGCCTCTCCGCTCTAGAGCCGGTCGGTTAGGCTCTT
CGGGGCCTCGCTCTCCCCCCTTCCCTTGCCCTCCCCTCCCGTACCCCTCCTCTACCCCACCCAA
GCCCGGCTCCCCGGCGGCCCGGCCATGGCGTGCGGAGCTACTCTGAAAAGGACTCTGGATTTCG
ACCCGCTGCTGAGCCCAGCGTCCCCAAAGCGGAGGCGATGTGCGCCATTGTCGGCGCCCACCTC
GGCTGCCGCCTCCCCGTCGTCGGCGGCCGCGGCCACAGCCGCCTCCTTTTCGGCCGCCGCCGCC
TCGCCGCAGAAGTATCTCCGAATGGAGCCGTCTCCCTTCGGCGACGTCTCCTCCCGCCTCACCA
CAGAACAAATTCTGTACAACATAAAACAAGAGTATAAGCGCATGCAGAAGAGAAGACATTTAGA
AACTAGTTTCCAACAGACAGATCCATGCTGTACTTCTGATGCACAGCCACATGCATTTCTCCTC
AGTGGACCAGCTTCACCAGGGACTCCATCAGCAACGTCCTCACCATTAAAAAAAGAACAGCCCT
TATTCACCCTACGGCAGGTTGGGATGATCTGTGAACGTTTATTGAAAGAACGTGAAGAGAAAGT
TCGAGAAGAGTATGAAGAAATACTGAACACAAAACTTGCAGAACAATATGATGCATTTGTGAAG
TTTACGCATGATCAAATAATGCGACGATATGGAGAACAGCCTGCTAGTTGTAAGTATTTCATCT
TTGAACTGAAAACAAGACAGTATTTTAAGAAGACATTTATTATCGTCTATATACCCAAGAAGAA
AATTTAACAGAAAATCCTGGAGGAAAAGTTTGGAGGAAATGAGCAGCAAAACTTTACTAAGGCT
TACTTTTGGTTACTTAAATACGTAAGGCAATATATTAGGGATGAAGATCTGGTATGTGTTTAAA
TTTTTTGACCTGAACTTTGCACTAATTTTCGTTTTTTCCTCCTTTAGATGTTTCATGAATCACG
TTTTCTGCAGTTGTGGGCTGCCTTGTTCCTTGTTGAGTTGTTGCAAGAGGTCCCAATTATGACA
TGCAGCAATGCCAATACCCCCTGTGAATACAGGTTATTTCAAGCTTTTGTCAGTGGCAACCACT
CTTAGGCAGCAACTGGTTTTGGAAATTTCCCTGATGTCAATACCACCCGGATGTGGACATTTGC
TACCTGTATTAATGCCAGTGGCCTCATTTGCTGTATCATTACAATTTGGCTTCTTATATTAATG
TTTGAAAAAGATTAAAGCTGGTATTCTAAGAACATGCCCTTCACTGGTTGTGTAAATAAAACTG
TAGAATGACACTTCAGATGAAGTTAGTGTGATTTTAATTGTGCACTACAACCAAGATGTAACCA
GTTATTAATAATTTAGAATGTAATCCCAGGACATTATTAAGCAAATAGCCTACAGTGCTTCCTG
TGAAATAGTGAAGGAGGAGGGCATTTCTGTATTCCAGGACTTTTCTTGGGGTTTCAGAATGGGT
TTATATGATTTCCTTTTTTTTTTTTTTTTGGTAGTTTTTATTTATTCTCTCAGTCTTTTTAACA
AATGTTTATTGCTGCATTTTTTCCCCCCAGTGTATCATTATTGTTTTACTACCCTTGTAGTACT
GGAATTTAGTTGGAATAAAACATTTACTTCTAACCTG

hide sequence

RefSeq Acc Id:

XM_021074638 ⟹ XP_020930297

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	56,047,188 - 56,075,342 (-)	NCBI

Sequence:

show sequence

GTTCACAGTAGCATCATGGAAGCCCAGGAAAACAGGCACAAGAGGGCACGGGAGCCAGACACGG
ACAGTGACACCAACTCTGAGTCAGGCTTGGACTCAGGCAGGACAACAGAACTGCCAGCTTCAGA
AGAAGAACAAATTCTGTACAACATAAAACAAGAGTATAAGCGCATGCAGAAGAGAAGACATTTA
GAAACTAGTTTCCAACAGACAGATCCATGCTGTACTTCTGATGCACAGCCACATGCATTTCTCC
TCAGTGGACCAGCTTCACCAGGGACTCCATCAGCAACGTCCTCACCATTAAAAAAAGAACAGCC
CTTATTCACCCTACGGCAGGTTGGGATGATCTGTGAACGTTTATTGAAAGAACGTGAAGAGAAA
GTTCGAGAAGAGTATGAAGAAATACTGAACACAAAACTTGCAGAACAATATGATGCATTTGTGA
AGTTTACGCATGATCAAATAATGCGACGATATGGAGAACAGCCTGCTAGTTGTAAGTATTTCAT
CTTTGAACTGAAAACAAGACAGTATTTTAAGAAGACATTTATTATCGTCTATATACCCAAGAAG
AAAATTTAACAGAAAATCCTGGAGGAAAAGTTTGGAGGAAATGAGCAGCAAAACTTTACTAAGG
CTTACTTTTGGTTACTTAAATACGTAAGGCAATATATTAGGGATGAAGATCTGGTATGTGTTTA
AATTTTTTGACCTGAACTTTGCACTAATTTTCGTTTTTTCCTCCTTTAGATGTTTCATGAATCA
CGTTTTCTGCAGTTGTGGGCTGCCTTGTTCCTTGTTGAGTTGTTGCAAGAGGTCCCAATTATGA
CATGCAGCAATGCCAATACCCCCTGTGAATACAGGTTATTTCAAGCTTTTGTCAGTGGCAACCA
CTCTTAGGCAGCAACTGGTTTTGGAAATTTCCCTGATGTCAATACCACCCGGATGTGGACATTT
GCTACCTGTATTAATGCCAGTGGCCTCATTTGCTGTATCATTACAATTTGGCTTCTTATATTAA
TGTTTGAAAAAGATTAAAGCTGGTATTCTAAGAACATGCCCTTCACTGGTTGTGTAAATAAAAC
TGTAGAATGACACTTCAGATGAAGTTAGTGTGATTTTAATTGTGCACTACAACCAAGATGTAAC
CAGTTATTAATAATTTAGAATGTAATCCCAGGACATTATTAAGCAAATAGCCTACAGTGCTTCC
TGTGAAATAGTGAAGGAGGAGGGCATTTCTGTATTCCAGGACTTTTCTTGGGGTTTCAGAATGG
GTTTATATGATTTCCTTTTTTTTTTTTTTTTGGTAGTTTTTATTTATTCTCTCAGTCTTTTTAA
CAAATGTTTATTGCTGCATTTTTTCCCCCCAGTGTATCATTATTGTTTTACTACCCTTGTAGTA
CTGGAATTTAGTTGGAATAAAACATTTACTTCTAACCTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001265681	(Get FASTA)	NCBI Sequence Viewer
	XP_020930249	(Get FASTA)	NCBI Sequence Viewer
	XP_020930297	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A0A287BDC1	(Get FASTA)	NCBI Sequence Viewer
	AER35882	(Get FASTA)	NCBI Sequence Viewer
	AGA94528	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000004651
	ENSSSCP00000004651.2
	ENSSSCP00000060200
	ENSSSCP00000060200.1
	ENSSSCP00015020126.1
	ENSSSCP00015020209.1
	ENSSSCP00025038113.1
	ENSSSCP00025038183.1
	ENSSSCP00030042467.1
	ENSSSCP00030042479.1
	ENSSSCP00035018074.1
	ENSSSCP00035018077.1
	ENSSSCP00040045807.1
	ENSSSCP00040045819.1
	ENSSSCP00045033585.1
	ENSSSCP00045033655.1
	ENSSSCP00050040829.1
	ENSSSCP00050040831.1
	ENSSSCP00055004772.1
	ENSSSCP00055004785.1
	ENSSSCP00060030557.1
	ENSSSCP00060030561.1
	ENSSSCP00065035701.1
	ENSSSCP00065035704.1
	ENSSSCP00070041657.1
	ENSSSCP00070041658.1

RefSeq Acc Id:	XP_020930297 ⟸ XM_021074638
- Peptide Label:	isoform X2
- Sequence:	show sequence MEAQENRHKRAREPDTDSDTNSESGLDSGRTTELPASEEEQILYNIKQEYKRMQKRRHLETSFQ QTDPCCTSDAQPHAFLLSGPASPGTPSATSSPLKKEQPLFTLRQVGMICERLLKEREEKVREEY EEILNTKLAEQYDAFVKFTHDQIMRRYGEQPASCKYFIFELKTRQYFKKTFIIVYIPKKKI hide sequence

RefSeq Acc Id:	XP_020930249 ⟸ XM_021074590
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VEF1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPSSAAAATAASFSAAAASPQKYLRM EPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLLSGPASPGT PSATSSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYDAFVKFTHDQIMR RYGEQPASCKYFIFELKTRQYFKKTFIIVYIPKKKI hide sequence

RefSeq Acc Id:	NP_001265681 ⟸ NM_001278752
- UniProtKB:	A0A287BDC1 (UniProtKB/Swiss-Prot), K7NCI8 (UniProtKB/Swiss-Prot), F1S0E7 (UniProtKB/TrEMBL), A0A4X1VIF6 (UniProtKB/TrEMBL), A0A4X1VEF1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPSSAAAATAASFSAAAASPQKYLRM EPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLLSGPASPGT PSATSSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYDAFVKFTHDQIMR RYGEQPASYVS hide sequence

RefSeq Acc Id:

ENSSSCP00000060200 ⟸ ENSSSCT00000088888

RefSeq Acc Id:

ENSSSCP00000054520 ⟸ ENSSSCT00000051283

RefSeq Acc Id:

ENSSSCP00000004651 ⟸ ENSSSCT00000004762

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000004307	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00015037910	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00025063838	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00030066045	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00035034100	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00040073652	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00045028345	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00050069421	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00055003144	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00060052031	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00065059848	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00070024713	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000004762	ENTREZGENE
	ENSSSCT00000004762.5	UniProtKB/Swiss-Prot
	ENSSSCT00000088888	ENTREZGENE
	ENSSSCT00000088888.2	UniProtKB/TrEMBL
	ENSSSCT00015050447.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00015050640.1	UniProtKB/TrEMBL
	ENSSSCT00025087459.1	UniProtKB/TrEMBL
	ENSSSCT00025087601.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00030092287.1	UniProtKB/TrEMBL
	ENSSSCT00030092315.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00035045186.1	UniProtKB/TrEMBL
	ENSSSCT00035045193.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00040101657.1	UniProtKB/TrEMBL
	ENSSSCT00040101685.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00045048318.1	UniProtKB/TrEMBL
	ENSSSCT00045048408.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00050094710.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00050094713.1	UniProtKB/TrEMBL
	ENSSSCT00055006086.1	UniProtKB/TrEMBL
	ENSSSCT00055006100.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00060070825.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00060070831.1	UniProtKB/TrEMBL
	ENSSSCT00065081970.1	UniProtKB/TrEMBL
	ENSSSCT00065081977.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00070049327.1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCT00070049328.1	UniProtKB/TrEMBL
InterPro	Akirin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	ssc:100519991	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	AKIRIN2	ENTREZGENE
PANTHER	AKIRIN-2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR13293	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A287BDC1	ENTREZGENE
	A0A4X1VEF1	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VIF6	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2QDS0_PIG	UniProtKB/TrEMBL
	AKIR2_PIG	UniProtKB/Swiss-Prot
	F1S0E7	ENTREZGENE
	K7NCI8	ENTREZGENE
UniProt Secondary	F1S0E7	UniProtKB/Swiss-Prot
	K7NCI8	UniProtKB/Swiss-Prot
VGNC ID	VGNC:103023	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar