PI4KA (phosphatidylinositol 4-kinase alpha) - Rat Genome Database

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Gene: PI4KA (phosphatidylinositol 4-kinase alpha) Sus scrofa
Analyze
Symbol: PI4KA
Name: phosphatidylinositol 4-kinase alpha
RGD ID: 14044095
Description: ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); INVOLVED IN phosphorylation (ortholog); PARTICIPATES IN inositol metabolic pathway; phosphoinositide metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); DiGeorge syndrome (ortholog); epilepsy (ortholog); FOUND IN Golgi-associated vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,390,408 - 50,491,950 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,390,416 - 50,491,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,838,856 - 53,940,687 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
PI4KA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,390,408 - 50,491,950 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,390,416 - 50,491,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,838,856 - 53,940,687 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PI4KA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2220,707,691 - 20,859,417 (-)EnsemblGRCh38hg38GRCh38
GRCh382220,707,691 - 20,858,812 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372221,061,979 - 21,213,099 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,391,979 - 19,543,070 (-)NCBINCBI36hg18NCBI36
Build 342219,386,544 - 19,517,555NCBI
Celera225,492,598 - 5,494,284 (+)NCBI
Celera224,557,005 - 4,704,409 (-)NCBI
Cytogenetic Map22q11.21NCBI
HuRef224,329,838 - 4,481,241 (-)NCBIHuRef
CHM1_12221,062,151 - 21,213,286 (-)NCBICHM1_1
Pi4ka
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,098,215 - 17,224,178 (-)NCBIGRCm39mm39
GRCm39 Ensembl1617,098,215 - 17,224,178 (-)Ensembl
GRCm381617,280,351 - 17,406,314 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,280,351 - 17,406,314 (-)EnsemblGRCm38mm10GRCm38
MGSCv371617,280,444 - 17,406,407 (-)NCBIGRCm37mm9NCBIm37
MGSCv361617,193,915 - 17,319,877 (-)NCBImm8
Celera1617,853,225 - 17,979,271 (-)NCBICelera
Cytogenetic Map16A3NCBI
Pi4ka
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21183,609,136 - 83,726,876 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1183,609,069 - 83,724,080 (+)Ensembl
Rnor_6.01187,858,323 - 87,975,549 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,858,453 - 87,973,422 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,914,592 - 91,028,242 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,610,281 - 85,726,603 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11185,650,877 - 85,767,200 (+)NCBI
Celera1182,373,025 - 82,486,238 (+)NCBICelera
Cytogenetic Map11q23NCBI
Pi4ka
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544219,446,955 - 19,598,725 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544219,446,955 - 19,594,790 (+)NCBIChiLan1.0ChiLan1.0
PI4KA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v0222,931,523 - 3,082,475 (-)NCBIMhudiblu_PPA_v0panPan3
PI4KA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,630,693 - 30,749,158 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,630,261 - 30,749,126 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,589,065 - 30,707,530 (+)NCBI
ROS_Cfam_1.02632,039,270 - 32,155,774 (+)NCBI
UMICH_Zoey_3.12630,085,016 - 30,204,201 (+)NCBI
UNSW_CanFamBas_1.02629,709,699 - 29,828,234 (+)NCBI
UU_Cfam_GSD_1.02630,798,988 - 30,918,013 (+)NCBI
Pi4ka
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,376,969 - 140,513,432 (+)NCBI
SpeTri2.0NW_0049366192,240,641 - 2,377,088 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PI4KA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,648,184 - 4,797,573 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl194,648,183 - 4,797,396 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660852,209,589 - 2,351,629 (+)NCBIVero_WHO_p1.0
Pi4ka
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624945837,877 - 1,016,041 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 2 3 5 1 23 2 2 3
Low 4 2 1 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000011053   ⟹   ENSSSCP00000010765
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,390,409 - 50,491,868 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000036991   ⟹   ENSSSCP00000036329
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,390,422 - 50,491,950 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000038776   ⟹   ENSSSCP00000041689
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,390,409 - 50,491,868 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000040235   ⟹   ENSSSCP00000043659
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,390,418 - 50,491,940 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000040494   ⟹   ENSSSCP00000048623
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,390,416 - 50,491,940 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000047988   ⟹   ENSSSCP00000045782
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,390,422 - 50,491,950 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000048718   ⟹   ENSSSCP00000046368
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,390,422 - 50,491,938 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049172   ⟹   ENSSSCP00000057486
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,390,418 - 50,491,940 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000061174   ⟹   ENSSSCP00000032896
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,390,419 - 50,491,906 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000089575   ⟹   ENSSSCP00000070878
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,390,408 - 50,447,889 (-)Ensembl
RefSeq Acc Id: XM_001929569   ⟹   XP_001929604
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,390,416 - 50,491,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013983179   ⟹   XP_013838633
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,390,416 - 50,491,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013983181   ⟹   XP_013838635
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,390,427 - 50,491,934 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073459   ⟹   XP_020929118
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,390,416 - 50,484,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073461   ⟹   XP_020929120
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,390,416 - 50,471,572 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_001929604   ⟸   XM_001929569
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013838633   ⟸   XM_013983179
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020929118   ⟸   XM_021073459
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020929120   ⟸   XM_021073461
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013838635   ⟸   XM_013983181
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSSSCP00000043659   ⟸   ENSSSCT00000040235
RefSeq Acc Id: ENSSSCP00000048623   ⟸   ENSSSCT00000040494
RefSeq Acc Id: ENSSSCP00000057486   ⟸   ENSSSCT00000049172
RefSeq Acc Id: ENSSSCP00000010765   ⟸   ENSSSCT00000011053
RefSeq Acc Id: ENSSSCP00000046368   ⟸   ENSSSCT00000048718
RefSeq Acc Id: ENSSSCP00000070878   ⟸   ENSSSCT00000089575
RefSeq Acc Id: ENSSSCP00000032896   ⟸   ENSSSCT00000061174
RefSeq Acc Id: ENSSSCP00000036329   ⟸   ENSSSCT00000036991
RefSeq Acc Id: ENSSSCP00000041689   ⟸   ENSSSCT00000038776
RefSeq Acc Id: ENSSSCP00000045782   ⟸   ENSSSCT00000047988
Protein Domains
PI3K/PI4K   PIK helical


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010092 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000010765 UniProtKB/TrEMBL
  ENSSSCP00000032896 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000036329 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000041689 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000043659 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000045782 UniProtKB/TrEMBL
  ENSSSCP00000046368 UniProtKB/TrEMBL
  ENSSSCP00000048623 UniProtKB/TrEMBL
  ENSSSCP00000057486 UniProtKB/TrEMBL
  ENSSSCP00000070878 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011053 UniProtKB/TrEMBL
  ENSSSCT00000036991 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000038776 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000040235 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000040494 UniProtKB/TrEMBL
  ENSSSCT00000047988 UniProtKB/TrEMBL
  ENSSSCT00000048718 UniProtKB/TrEMBL
  ENSSSCT00000049172 UniProtKB/TrEMBL
  ENSSSCT00000061174 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000089575 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1070.11 UniProtKB/TrEMBL
  1.25.40.70 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  PI3/4_kinase_cat_dom UniProtKB/TrEMBL
  PI3/4_kinase_cat_sf UniProtKB/TrEMBL
  PI3/4_kinase_CS UniProtKB/TrEMBL
  PI3K_accessory_dom UniProtKB/TrEMBL
  PI3K_accessory_sf UniProtKB/TrEMBL
  PI_Kinase UniProtKB/TrEMBL
KEGG Report ssc:100157143 UniProtKB/TrEMBL
NCBI Gene PI4KA ENTREZGENE
PANTHER PTHR10048 UniProtKB/TrEMBL
Pfam PI3_PI4_kinase UniProtKB/TrEMBL
  PI3Ka UniProtKB/TrEMBL
PROSITE PI3_4_KINASE_1 UniProtKB/TrEMBL
  PI3_4_KINASE_2 UniProtKB/TrEMBL
  PI3_4_KINASE_3 UniProtKB/TrEMBL
  PIK_HELICAL UniProtKB/TrEMBL
SMART PI3Ka UniProtKB/TrEMBL
  PI3Kc UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A286ZMT5_PIG UniProtKB/TrEMBL
  A0A286ZXT3_PIG UniProtKB/TrEMBL
  A0A287AD00_PIG UniProtKB/TrEMBL
  A0A287AIF1_PIG UniProtKB/TrEMBL
  A0A287AP41_PIG UniProtKB/TrEMBL
  A0A287AQP4_PIG UniProtKB/TrEMBL
  A0A287AXK3_PIG UniProtKB/TrEMBL
  A0A287BN29_PIG UniProtKB/TrEMBL
  A0A480IQK1_PIG UniProtKB/TrEMBL
  A0A5G2R191_PIG UniProtKB/TrEMBL
  F1RKY3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98191 ENTREZGENE