ACAD11 (acyl-CoA dehydrogenase family member 11) - Rat Genome Database

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Gene: ACAD11 (acyl-CoA dehydrogenase family member 11) Sus scrofa
Analyze
Symbol: ACAD11
Name: acyl-CoA dehydrogenase family member 11
RGD ID: 14042829
Description: ENCODES a protein that exhibits flavin adenine dinucleotide binding (inferred); long-chain fatty acyl-CoA dehydrogenase activity (inferred); medium-chain fatty acyl-CoA dehydrogenase activity (inferred); INVOLVED IN fatty acid beta-oxidation using acyl-CoA dehydrogenase (inferred); fatty acid metabolic process (inferred); ASSOCIATED WITH alkaptonuria (ortholog); developmental and epileptic encephalopathy 44 (ortholog); nephronophthisis (ortholog); FOUND IN membrane (inferred); mitochondrial membrane (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acyl-Coenzyme A dehydrogenase family, member 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1373,730,171 - 73,831,701 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11373,733,508 - 73,831,496 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21381,305,201 - 81,403,413 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ACAD11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1373,730,171 - 73,831,701 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11373,733,508 - 73,831,496 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21381,305,201 - 81,403,413 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACAD11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383132,558,141 - 132,659,809 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3132,558,138 - 132,660,082 (-)EnsemblGRCh38hg38GRCh38
GRCh373132,276,985 - 132,378,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363133,759,672 - 133,861,665 (-)NCBINCBI36Build 36hg18NCBI36
Celera3130,703,259 - 130,804,468 (-)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3129,656,407 - 129,758,621 (-)NCBIHuRef
CHM1_13132,239,976 - 132,341,990 (-)NCBICHM1_1
T2T-CHM13v2.03135,302,651 - 135,404,302 (-)NCBIT2T-CHM13v2.0
Acad11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,940,923 - 104,004,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9103,940,576 - 104,004,924 (+)EnsemblGRCm39 Ensembl
GRCm389104,063,724 - 104,127,656 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9104,063,377 - 104,127,725 (+)EnsemblGRCm38mm10GRCm38
MGSCv379103,966,033 - 104,029,976 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369103,922,048 - 103,985,991 (+)NCBIMGSCv36mm8
Celera9103,616,515 - 103,680,741 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.25NCBI
Acad11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88113,560,142 - 113,625,346 (+)NCBIGRCr8
mRatBN7.28104,681,346 - 104,746,559 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8104,681,396 - 104,746,560 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8110,328,511 - 110,393,633 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08108,527,704 - 108,592,826 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08106,370,404 - 106,435,529 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08112,594,758 - 112,676,275 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8112,594,691 - 112,676,280 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08111,982,421 - 112,062,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48109,124,763 - 109,190,186 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18109,144,288 - 109,209,371 (+)NCBI
Celera8104,045,620 - 104,111,515 (+)NCBICelera
Cytogenetic Map8q32NCBI
Acad11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555015,871,113 - 5,952,909 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555015,871,328 - 5,952,786 (+)NCBIChiLan1.0ChiLan1.0
ACAD11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22130,508,569 - 130,610,914 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13130,513,294 - 130,615,237 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03129,631,105 - 129,732,894 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13137,107,834 - 137,209,550 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3137,107,834 - 137,209,550 (-)Ensemblpanpan1.1panPan2
ACAD11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12329,537,049 - 29,645,338 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2329,538,555 - 29,645,176 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2329,511,533 - 29,620,447 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02330,051,623 - 30,159,455 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2330,050,335 - 30,159,135 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12329,747,036 - 29,855,437 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02329,804,592 - 29,912,565 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02330,051,803 - 30,160,280 (-)NCBIUU_Cfam_GSD_1.0
Acad11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560269,155,127 - 69,236,773 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365295,914,539 - 5,996,902 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365295,915,241 - 5,997,230 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACAD11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11557,632,139 - 57,706,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1557,626,742 - 57,707,504 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604130,601,367 - 30,694,674 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acad11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247308,704,350 - 8,792,741 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247308,704,458 - 8,792,678 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ACAD11
2494 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000012726   ⟹   ENSSSCP00000012392
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1373,733,858 - 73,831,701 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000076803   ⟹   ENSSSCP00000070238
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1373,785,077 - 73,831,701 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000085065   ⟹   ENSSSCP00000073802
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1373,730,171 - 73,831,444 (-)Ensembl
RefSeq Acc Id: XM_001924765   ⟹   XP_001924800
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11373,733,508 - 73,831,496 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001924800 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000012392
  ENSSSCP00000012392.4
  ENSSSCP00000070238.1
  ENSSSCP00000073802.2
  ENSSSCP00065026220.1
  ENSSSCP00065026249.1
RefSeq Acc Id: XP_001924800   ⟸   XM_001924765
- UniProtKB: A0A8D1YW89 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000073802   ⟸   ENSSSCT00000085065
Ensembl Acc Id: ENSSSCP00000070238   ⟸   ENSSSCT00000076803
Ensembl Acc Id: ENSSSCP00000012392   ⟸   ENSSSCT00000012726

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011629 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00065044274 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012726 ENTREZGENE
  ENSSSCT00000012726.4 UniProtKB/TrEMBL
  ENSSSCT00000076803.1 UniProtKB/TrEMBL
  ENSSSCT00000085065.2 UniProtKB/TrEMBL
  ENSSSCT00065060541.1 UniProtKB/TrEMBL
  ENSSSCT00065060599.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
  2.40.110.10 UniProtKB/TrEMBL
  3.90.1200.10 UniProtKB/TrEMBL
  Butyryl-CoA Dehydrogenase, subunit A, domain 3 UniProtKB/TrEMBL
InterPro ACAD10-like UniProtKB/TrEMBL
  ACAD10_11_N UniProtKB/TrEMBL
  Acyl-CoA_dehydrogenase UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/TrEMBL
  AcylCo_DH-like_C UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCoA_DH/ox_N UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/TrEMBL
  Aminoglycoside_PTrfase UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
NCBI Gene ACAD11 ENTREZGENE
PANTHER ACYL-COA DEHYDROGENASE FAMILY MEMBER 11 UniProtKB/TrEMBL
  HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED UniProtKB/TrEMBL
  HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED UniProtKB/TrEMBL
  MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED UniProtKB/TrEMBL
Pfam Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_dh_N UniProtKB/TrEMBL
  APH UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
  SSF56645 UniProtKB/TrEMBL
UniProt A0A5G2QZC2_PIG UniProtKB/TrEMBL
  A0A8D1YW89 ENTREZGENE, UniProtKB/TrEMBL
  F1SNT1_PIG UniProtKB/TrEMBL
UniProt Secondary A0A5G2RFX9 UniProtKB/TrEMBL
VGNC ID VGNC:84999 ENTREZGENE