ATP6V1G3 (ATPase H+ transporting V1 subunit G3) - Rat Genome Database

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Gene: ATP6V1G3 (ATPase H+ transporting V1 subunit G3) Sus scrofa
Analyze
Symbol: ATP6V1G3
Name: ATPase H+ transporting V1 subunit G3
RGD ID: 14041956
Description: ENCODES a protein that exhibits ATPase binding (inferred); proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN proton transmembrane transport (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (inferred); plasma membrane (inferred); vacuolar proton-transporting V-type ATPase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit G 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1021,371,257 - 21,410,296 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11021,371,302 - 21,394,817 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21026,048,320 - 26,071,801 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V1G3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1021,371,257 - 21,410,296 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11021,371,302 - 21,394,817 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21026,048,320 - 26,071,801 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1G3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381198,523,222 - 198,540,945 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1198,523,222 - 198,540,945 (-)EnsemblGRCh38hg38GRCh38
GRCh371198,492,352 - 198,510,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361196,758,975 - 196,776,698 (-)NCBINCBI36Build 36hg18NCBI36
Build 341195,224,010 - 195,241,732NCBI
Celera1171,614,921 - 171,632,643 (-)NCBICelera
Cytogenetic Map1q31.3NCBI
HuRef1169,659,548 - 169,677,275 (-)NCBIHuRef
CHM1_11199,914,674 - 199,932,396 (-)NCBICHM1_1
T2T-CHM13v2.01197,783,117 - 197,800,839 (-)NCBIT2T-CHM13v2.0
Atp6v1g3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391138,201,476 - 138,217,200 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1138,201,476 - 138,217,200 (+)EnsemblGRCm39 Ensembl
GRCm381138,273,738 - 138,289,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1138,273,738 - 138,289,462 (+)EnsemblGRCm38mm10GRCm38
MGSCv371140,170,315 - 140,186,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361140,090,149 - 140,105,873 (+)NCBIMGSCv36mm8
Celera1140,915,081 - 140,930,807 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map160.82NCBI
Atp6v1g3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81352,351,787 - 52,376,784 (+)NCBIGRCr8
mRatBN7.21349,800,256 - 49,825,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1349,794,222 - 49,825,247 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1352,418,239 - 52,432,667 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01353,706,130 - 53,720,558 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01350,973,369 - 50,987,782 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01355,265,794 - 55,288,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1355,274,199 - 55,288,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01360,297,386 - 60,321,789 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41351,462,070 - 51,476,522 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11351,438,095 - 51,489,937 (+)NCBI
Celera1350,095,450 - 50,109,898 (+)NCBICelera
Cytogenetic Map13q13NCBI
Atp6v1g3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540634,910,498 - 34,927,745 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540634,910,498 - 34,927,745 (-)NCBIChiLan1.0ChiLan1.0
ATP6V1G3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2150,834,517 - 50,852,067 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1150,793,764 - 50,811,547 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01174,130,976 - 174,148,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11178,440,516 - 178,458,092 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1178,440,516 - 178,458,108 (-)Ensemblpanpan1.1panPan2
ATP6V1G3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.174,368,476 - 4,388,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl74,368,418 - 4,388,539 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha74,053,554 - 4,073,662 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.074,054,400 - 4,074,512 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl74,054,387 - 4,074,504 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.174,001,449 - 4,021,551 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.074,102,151 - 4,122,266 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.074,134,335 - 4,154,453 (+)NCBIUU_Cfam_GSD_1.0
Atp6v1g3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934476,227,144 - 76,242,234 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365675,461,760 - 5,476,879 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365675,461,760 - 5,476,893 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1G3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12530,867,341 - 30,886,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2530,868,161 - 30,886,540 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605531,756,940 - 31,775,447 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v1g3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247981,891,613 - 1,910,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247981,893,699 - 1,910,104 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP6V1G3
1126 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system renal system reproductive system respiratory system
High
Medium
Low 2 2 1 2
Below cutoff 3 2 3 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000036929   ⟹   ENSSSCP00000059195
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1021,371,257 - 21,410,296 (-)Ensembl
RefSeq Acc Id: XM_003130597   ⟹   XP_003130645
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11021,371,302 - 21,394,817 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003130645   ⟸   XM_003130597
- UniProtKB: A0A287BRQ6 (UniProtKB/TrEMBL),   A0A8D1ERN8 (UniProtKB/TrEMBL),   A0A8D0ZRR7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000059195   ⟸   ENSSSCT00000036929


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036270 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005029242 UniProtKB/TrEMBL
  ENSSSCG00015036536 UniProtKB/TrEMBL
  ENSSSCG00025029327 UniProtKB/TrEMBL
  ENSSSCG00030054671 UniProtKB/TrEMBL
  ENSSSCG00035035325 UniProtKB/TrEMBL
  ENSSSCG00040043752 UniProtKB/TrEMBL
  ENSSSCG00045038780 UniProtKB/TrEMBL
  ENSSSCG00050048150 UniProtKB/TrEMBL
  ENSSSCG00055014612 UniProtKB/TrEMBL
  ENSSSCG00060030070 UniProtKB/TrEMBL
  ENSSSCG00065077249 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000036929 ENTREZGENE
  ENSSSCT00000036929.3 UniProtKB/TrEMBL
  ENSSSCT00005046428.1 UniProtKB/TrEMBL
  ENSSSCT00015048491.1 UniProtKB/TrEMBL
  ENSSSCT00025039800.1 UniProtKB/TrEMBL
  ENSSSCT00030076142.1 UniProtKB/TrEMBL
  ENSSSCT00035046806.1 UniProtKB/TrEMBL
  ENSSSCT00040058590.1 UniProtKB/TrEMBL
  ENSSSCT00045067336.1 UniProtKB/TrEMBL
  ENSSSCT00050065594.1 UniProtKB/TrEMBL
  ENSSSCT00055028784.1 UniProtKB/TrEMBL
  ENSSSCT00060040605.1 UniProtKB/TrEMBL
  ENSSSCT00065106797.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.2950 UniProtKB/TrEMBL
InterPro V-ATPase_G UniProtKB/TrEMBL
KEGG Report ssc:100522819 UniProtKB/TrEMBL
NCBI Gene ATP6V1G3 ENTREZGENE
PANTHER PTHR12713 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT G 3 UniProtKB/TrEMBL
Pfam V-ATPase_G UniProtKB/TrEMBL
UniProt A0A287BRQ6 ENTREZGENE
  A0A8D0ZRR7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ERN8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BRQ6 UniProtKB/TrEMBL
VGNC ID VGNC:95878 ENTREZGENE