BUB1 (BUB1 mitotic checkpoint serine/threonine kinase) - Rat Genome Database

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Gene: BUB1 (BUB1 mitotic checkpoint serine/threonine kinase) Sus scrofa
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Symbol: BUB1
Name: BUB1 mitotic checkpoint serine/threonine kinase
RGD ID: 14041896
Description: ENCODES a protein that exhibits ATP binding (inferred); histone H2A kinase activity (inferred); protein kinase activity (inferred); INVOLVED IN chromosome segregation (ortholog); intrinsic apoptotic signaling pathway (ortholog); positive regulation of intrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed chromosome, centromeric region (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: budding uninhibited by benzimidazoles 1 homolog; mitotic checkpoint serine/threonine-protein kinase BUB1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl345,585,226 - 45,624,543 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1345,585,188 - 45,623,240 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2347,568,892 - 47,584,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BUB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl345,585,226 - 45,624,543 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1345,585,188 - 45,623,240 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2347,568,892 - 47,584,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BUB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382110,637,528 - 110,678,063 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2110,637,528 - 110,678,063 (-)EnsemblGRCh38hg38GRCh38
GRCh372111,395,105 - 111,435,640 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362111,111,881 - 111,152,135 (-)NCBINCBI36Build 36hg18NCBI36
Build 342111,111,642 - 111,151,895NCBI
Celera2105,046,046 - 105,086,323 (-)NCBICelera
Cytogenetic Map2q13NCBI
HuRef2104,274,404 - 104,314,815 (-)NCBIHuRef
CHM1_12111,399,569 - 111,439,978 (-)NCBICHM1_1
T2T-CHM13v2.02111,060,427 - 111,100,976 (-)NCBIT2T-CHM13v2.0
Bub1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,642,117 - 127,673,790 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2127,643,036 - 127,673,785 (-)EnsemblGRCm39 Ensembl
GRCm382127,800,197 - 127,831,859 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,801,122 - 127,831,865 (-)EnsemblGRCm38mm10GRCm38
MGSCv372127,625,936 - 127,657,595 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362127,492,562 - 127,523,236 (-)NCBIMGSCv36mm8
Celera2129,026,419 - 129,058,592 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map262.1NCBI
Bub1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83135,473,525 - 135,504,921 (-)NCBIGRCr8
mRatBN7.23115,020,254 - 115,051,650 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3115,020,254 - 115,051,650 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3118,910,094 - 118,941,495 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03127,505,638 - 127,537,039 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03125,165,975 - 125,197,376 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03120,373,604 - 120,404,910 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3120,373,604 - 120,404,910 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03126,929,123 - 126,960,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43115,323,510 - 115,354,906 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13115,230,064 - 115,260,294 (-)NCBI
Celera3113,854,710 - 113,886,108 (-)NCBICelera
Cytogenetic Map3q36NCBI
Bub1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,152,758 - 3,191,888 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,152,798 - 3,190,185 (+)NCBIChiLan1.0ChiLan1.0
BUB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21217,445,607 - 17,533,774 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A17,448,057 - 17,488,719 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A91,393,317 - 91,433,579 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A111,815,335 - 111,855,573 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A111,793,236 - 111,858,392 (+)Ensemblpanpan1.1panPan2
BUB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11735,208,989 - 35,252,296 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1735,208,991 - 35,252,975 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,978,541 - 35,021,465 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01735,980,361 - 36,023,634 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,980,365 - 36,023,641 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11735,107,041 - 35,149,998 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01735,176,457 - 35,219,422 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01735,386,576 - 35,429,599 (-)NCBIUU_Cfam_GSD_1.0
BUB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11413,647,342 - 13,698,061 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1413,647,462 - 13,697,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660805,994,677 - 6,036,649 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bub1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247491,584,186 - 1,639,770 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247491,584,289 - 1,639,334 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BUB1
943 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 2 5 2 2 2 3 3
Below cutoff 1 1 12

Sequence


RefSeq Acc Id: ENSSSCT00000025163   ⟹   ENSSSCP00000026685
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl345,585,226 - 45,624,543 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066450   ⟹   ENSSSCP00000065793
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl345,585,298 - 45,624,543 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000071948   ⟹   ENSSSCP00000064616
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl345,585,226 - 45,624,543 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000079878   ⟹   ENSSSCP00000072094
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl345,585,580 - 45,624,543 (+)Ensembl
RefSeq Acc Id: XM_021087046   ⟹   XP_020942705
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1345,585,197 - 45,623,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087047   ⟹   XP_020942706
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1345,585,188 - 45,623,240 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020942706   ⟸   XM_021087047
- Peptide Label: isoform X2
- UniProtKB: I3LRF1 (UniProtKB/TrEMBL),   A0A4X1VPB3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942705   ⟸   XM_021087046
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VPB3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000026685   ⟸   ENSSSCT00000025163
RefSeq Acc Id: ENSSSCP00000072094   ⟸   ENSSSCT00000079878
RefSeq Acc Id: ENSSSCP00000065793   ⟸   ENSSSCT00000066450
RefSeq Acc Id: ENSSSCP00000064616   ⟸   ENSSSCT00000071948
Protein Domains
BUB1 N-terminal   Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030469 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025076207 UniProtKB/TrEMBL
  ENSSSCG00035051369 UniProtKB/TrEMBL
  ENSSSCG00045015139 UniProtKB/TrEMBL
  ENSSSCG00055008854 UniProtKB/TrEMBL
  ENSSSCG00065061899 UniProtKB/TrEMBL
  ENSSSCG00070026612 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025163 ENTREZGENE
  ENSSSCT00000025163.3 UniProtKB/TrEMBL
  ENSSSCT00025105498.1 UniProtKB/TrEMBL
  ENSSSCT00035068429.1 UniProtKB/TrEMBL
  ENSSSCT00045025793.1 UniProtKB/TrEMBL
  ENSSSCT00055017413.1 UniProtKB/TrEMBL
  ENSSSCT00065084903.1 UniProtKB/TrEMBL
  ENSSSCT00070053555.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.430 UniProtKB/TrEMBL
  6.10.130.20 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Bub1/Mad3 UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Mad3/Bub1_I UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene BUB1 ENTREZGENE
PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 UniProtKB/TrEMBL
  PTHR14030 UniProtKB/TrEMBL
Pfam Mad3_BUB1_I UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PROSITE BUB1_N UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART Mad3_BUB1_I UniProtKB/TrEMBL
  S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A4X1VPB3 ENTREZGENE, UniProtKB/TrEMBL
  I3LRF1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85918 ENTREZGENE