NLRP1 (NLR family pyrin domain containing 1) - Rat Genome Database

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Gene: NLRP1 (NLR family pyrin domain containing 1) Sus scrofa
Analyze
Symbol: NLRP1
Name: NLR family pyrin domain containing 1
RGD ID: 14041495
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); cysteine-type endopeptidase activator activity (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to UV-B (ortholog); defense response to bacterium (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH Autoinflammation with Arthritis and Dyskeratosis (ortholog); developmental and epileptic encephalopathy 25 (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); neuronal cell body (ortholog); NLRP1 inflammasome complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NACHT, LRR and PYD domains-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11251,479,968 - 51,495,540 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NLRP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11251,479,968 - 51,495,540 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NLRP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,501,396 - 5,584,509 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,499,415 - 5,619,424 (-)EnsemblGRCh38hg38GRCh38
GRCh37175,404,716 - 5,487,829 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,345,443 - 5,428,556 (-)NCBINCBI36Build 36hg18NCBI36
Celera175,421,095 - 5,503,841 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef175,294,862 - 5,377,604 (-)NCBIHuRef
CHM1_1175,414,362 - 5,497,490 (-)NCBICHM1_1
T2T-CHM13v2.0175,395,133 - 5,478,273 (-)NCBIT2T-CHM13v2.0
Nlrp1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,982,023 - 71,035,780 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,983,062 - 71,035,530 (-)EnsemblGRCm39 Ensembl
GRCm381171,091,197 - 71,144,969 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,092,236 - 71,144,704 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,904,699 - 70,958,206 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,908,431 - 70,958,561 (-)NCBIMGSCv36mm8
Celera1178,634,796 - 78,688,328 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.21NCBI
Nlrp1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81056,277,134 - 56,332,229 (-)NCBIGRCr8
mRatBN7.21055,778,560 - 55,833,639 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,778,560 - 55,825,180 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,458,304 - 60,504,924 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,946,824 - 59,993,447 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,445,908 - 55,492,512 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,692,474 - 57,747,608 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,692,474 - 57,822,498 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,437,815 - 57,492,207 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,963,708 - 58,007,925 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,960,835 - 58,122,088 (-)NCBI
Celera1054,924,259 - 54,970,955 (-)NCBICelera
Cytogenetic Map10q24NCBI
NLRP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21913,096,919 - 13,194,847 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11715,079,526 - 15,162,296 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,562,129 - 5,667,765 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,541,559 - 5,623,659 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,542,007 - 5,623,091 (-)Ensemblpanpan1.1panPan2
NLRP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,264,554 - 31,299,538 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,266,621 - 31,299,304 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,399,983 - 31,440,503 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,369,269 - 31,407,109 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,370,391 - 31,404,052 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,334,819 - 31,372,650 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,293,857 - 31,331,580 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,467,813 - 31,507,973 (+)NCBIUU_Cfam_GSD_1.0
Nlrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,611,186 - 53,653,113 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,248,903 - 2,289,151 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,248,153 - 2,290,802 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NLRP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,930,643 - 4,983,378 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605916,600,759 - 16,674,092 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in NLRP1
211 total Variants

Expression


Sequence


RefSeq Acc Id: XM_021067720   ⟹   XP_020923379
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,479,968 - 51,495,540 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021067721   ⟹   XP_020923380
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,479,969 - 51,495,540 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021067722   ⟹   XP_020923381
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,482,107 - 51,495,540 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020923379 (Get FASTA)   NCBI Sequence Viewer  
  XP_020923380 (Get FASTA)   NCBI Sequence Viewer  
  XP_020923381 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020923379   ⟸   XM_021067720
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020923380   ⟸   XM_021067721
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020923381   ⟸   XM_021067722
- Peptide Label: isoform X3
- Sequence:
Protein Domains
CARD   FIIND   NACHT


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro CARD UniProtKB/TrEMBL
  CARD8/ASC/NALP1_CARD UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/TrEMBL
  FIIND_dom UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  NACHT_NTPase UniProtKB/TrEMBL
  NLRC_HD2 UniProtKB/TrEMBL
  NOD2_WH UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene NLRP1 ENTREZGENE
PANTHER NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam CARD UniProtKB/TrEMBL
  FIIND UniProtKB/TrEMBL
  LRR_6 UniProtKB/TrEMBL
  NACHT UniProtKB/TrEMBL
  NLRC4_HD2 UniProtKB/TrEMBL
  NOD2_WH UniProtKB/TrEMBL
PROSITE CARD UniProtKB/TrEMBL
  FIIND UniProtKB/TrEMBL
  NACHT UniProtKB/TrEMBL
SMART LRR_RI UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
  SSF47986 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt K9IW94_PIG UniProtKB/TrEMBL