LOC100519181 (olfactory receptor 9Q1-like)

Gene: LOC100519181 (olfactory receptor 9Q1-like) Sus scrofa

Analyze

Symbol:

LOC100519181 (Ensembl: OR9Q1)

Name:

olfactory receptor 9Q1-like (Ensembl:olfactory receptor family 9 subfamily Q member 1)

RGD ID:

14040039

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); odorant binding (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	12,878,048 - 12,878,983 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	12,878,048 - 12,878,983 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	12,538,419 - 12,539,354 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IBA,IEA)

sensory perception of smell (IBA,IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

odorant binding (IBA,IEA)

olfactory receptor activity (IBA,IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100519181
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	12,878,048 - 12,878,983 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	12,878,048 - 12,878,983 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	12,538,419 - 12,539,354 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR9Q1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	58,023,881 - 58,181,616 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	58,023,881 - 58,181,616 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	57,791,353 - 57,949,088 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	57,547,929 - 57,705,635 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	57,703,492 - 57,704,425	NCBI
Celera	11	55,303,873 - 55,306,029 (+)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	54,140,722 - 54,296,863 (+)	NCBI		HuRef
CHM1_1	11	57,658,423 - 57,815,108 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	57,974,227 - 58,131,037 (+)	NCBI		T2T-CHM13v2.0

Or9q1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	13,804,823 - 13,805,758 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	13,804,246 - 13,807,852 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	13,827,459 - 13,828,394 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	13,826,882 - 13,830,488 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	13,901,949 - 13,902,884 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	13,894,478 - 13,895,413 (-)	NCBI		MGSCv36	mm8
Celera	19	14,498,201 - 14,499,136 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	8.89	NCBI

Or9q1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	220,384,314 - 220,385,249 (-)	NCBI		GRCr8
mRatBN7.2	1	210,959,770 - 210,960,705 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	210,959,294 - 210,962,782 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	219,334,225 - 219,335,160 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	226,225,474 - 226,226,409 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	219,088,719 - 219,089,654 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	230,674,772 - 230,675,707 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	230,674,772 - 230,675,707 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	237,813,020 - 237,813,955 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	216,923,476 - 216,924,411 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	217,084,671 - 217,085,607 (-)	NCBI
Celera	1	208,358,457 - 208,359,392 (-)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

OR9Q4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	38,161,522 - 38,163,550 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	38,162,447 - 38,163,382 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	37,706,706 - 37,707,641 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	38,837,430 - 38,838,366 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	38,837,430 - 38,838,366 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	38,421,143 - 38,422,078 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	37,993,487 - 37,994,422 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	38,620,664 - 38,621,599 (-)	NCBI		UU_Cfam_GSD_1.0

LOC103235194
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	15,079,974 - 15,081,453 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	15,080,327 - 15,081,262 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	112,398,646 - 112,400,871 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LOC100519181
18 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013994317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000014388 ⟹ ENSSSCP00000013999

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	12,878,048 - 12,878,983 (-)	Ensembl

RefSeq Acc Id:

XM_013994317 ⟹ XP_013849771

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	12,878,048 - 12,878,983 (-)	NCBI

Sequence:

show sequence

ATGGCAGAGAAGAACTTCACCTTGGTGACTGAATTCCTCCTGATCGCATTCACTGACTGTCCTG
AAAGGGCACTGCCTCTCTTCCTCCTGTTTCTATTTATCTATCTCACCACCCTTTGGGGGAACTT
GGGCATGATTATCCTGATCCGCGTGGATCTCCGGCTCCACACCCCAATGTACTTCCTTCTGAGT
CACCTCTCGTTCATGGACATCTGCTACTCATCCGTCACCGTGCCTCAGATGATGGCCGTGTTGC
TGGAGCATGGGGTGGCTCTATCCTACACACGCTGTGTCACCCAGTTCTTCCTCTTCACCTTCTT
CGGCTCCATTGACTGCTACCTCCTGGCCCTCATGGCGTATGACCGCTACCTGGCCGTGTGCCGA
CCCCTGCTCTACGTCACCATCATGACGCAGAAGGCCCGGTTGGGTTTTGTGGGTGGGGCTTACG
TCGCGGGTGTCTTCAGCGCCTTGGTTCGCACGGTCTCAGCTTTCACGCTCTCCTTCTGTGGAAC
CAATGAGATCGACTTCATTTTCTGTGACCTCCCTCCCCTCTTAAAGCTGACCTGTGGGGACAGC
TACACTCAGGAAGTGGTAATTATTGTGTTTGCCATTTTTGTCATCCCGGCCTGCATGGTGGTGA
TTTTAGTGTCCTACTTGCTTATCATCCTGGCTATTTTGAGGATCCCCTCCGTGGGAGGCAGGGC
CAAGACCTTCTCTACCTGTGCCTCCCACCTCACCTCCGTGTCACTCTTCTTTGGGACCCTCATC
TTCATGTATCTGAGAGATAAATCCGGCCAGTCCACTGAGGAAGATCGGGTGGTGTCTGTGTTTT
ACACCGCAGTGATCCCCATGTTGAACCCCCTCATCTACAGCCTGAGGAACAAAGAAGTGAAGGA
GGCCCTGAAGAAAGCTCTTAACAGAGCCAGGCTGTCCTAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_013849771	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000013999
	ENSSSCP00000013999.3
	ENSSSCP00025043355.1
	ENSSSCP00070043475.1

RefSeq Acc Id:

XP_013849771 ⟸ XM_013994317

- UniProtKB:

F1RMD1 (UniProtKB/TrEMBL), A0A8D0TMP7 (UniProtKB/TrEMBL), A0A4X1VQU9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEKNFTLVTEFLLIAFTDCPERALPLFLLFLFIYLTTLWGNLGMIILIRVDLRLHTPMYFLLS
HLSFMDICYSSVTVPQMMAVLLEHGVALSYTRCVTQFFLFTFFGSIDCYLLALMAYDRYLAVCR
PLLYVTIMTQKARLGFVGGAYVAGVFSALVRTVSAFTLSFCGTNEIDFIFCDLPPLLKLTCGDS
YTQEVVIIVFAIFVIPACMVVILVSYLLIILAILRIPSVGGRAKTFSTCASHLTSVSLFFGTLI
FMYLRDKSGQSTEEDRVVSVFYTAVIPMLNPLIYSLRNKEVKEALKKALNRARLS

hide sequence

RefSeq Acc Id:

ENSSSCP00000013999 ⟸ ENSSSCT00000014388

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000041862	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025071733	UniProtKB/TrEMBL
	ENSSSCG00070025717	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000014388	ENTREZGENE
	ENSSSCT00000014388.4	UniProtKB/TrEMBL
	ENSSSCT00025098560.1	UniProtKB/TrEMBL
	ENSSSCT00070051405.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	ssc:100519181	UniProtKB/TrEMBL
NCBI Gene	LOC100519181	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 9Q1	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A4X1VQU9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0TMP7	ENTREZGENE, UniProtKB/TrEMBL
	F1RMD1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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