POMT1 (protein O-mannosyltransferase 1) - Rat Genome Database
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Gene: POMT1 (protein O-mannosyltransferase 1) Sus scrofa
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Symbol: POMT1
Name: protein O-mannosyltransferase 1
RGD ID: 14039201
Description: ENCODES a protein that exhibits mannosyltransferase activity (ortholog); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of protein O-linked glycosylation (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); cardiomyopathy (ortholog); FOUND IN acrosomal vesicle (ortholog); endoplasmic reticulum membrane (ortholog); sarcoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: protein O-mannosyl-transferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,432,210 - 271,451,080 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,432,196 - 271,448,584 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,440,591 - 305,456,740 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
POMT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,432,210 - 271,451,080 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,432,196 - 271,448,584 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,440,591 - 305,456,740 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POMT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9131,502,789 - 131,523,806 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl9131,502,902 - 131,523,806 (+)EnsemblGRCh38hg38GRCh38
GRCh389131,502,902 - 131,523,803 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379134,378,282 - 134,399,193 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh379134,378,305 - 134,399,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369133,368,110 - 133,389,014 (+)NCBINCBI36hg18NCBI36
Build 349131,407,865 - 131,428,746NCBI
Celera9104,918,461 - 104,939,373 (+)NCBI
Cytogenetic Map9q34.13NCBI
HuRef9103,872,837 - 103,893,810 (+)NCBIHuRef
CHM1_19134,527,759 - 134,548,591 (+)NCBICHM1_1
Pomt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,126,652 - 32,145,017 (+)NCBIGRCm39mm39
GRCm38232,236,590 - 32,255,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,236,590 - 32,255,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,092,203 - 32,110,525 (+)NCBIGRCm37mm9NCBIm37
MGSCv36232,058,692 - 32,077,014 (+)NCBImm8
Celera231,941,009 - 31,959,335 (+)NCBICelera
Cytogenetic Map2BNCBI
Pomt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2315,520,717 - 15,538,579 (+)NCBI
Rnor_6.0 Ensembl311,254,026 - 11,271,872 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0311,253,424 - 11,271,873 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0316,602,808 - 16,620,746 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,348,786 - 11,366,633 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1311,245,184 - 11,263,006 (+)NCBI
Celera310,265,600 - 10,283,445 (+)NCBICelera
Cytogenetic Map3p12NCBI
Pomt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555131,189,169 - 1,203,933 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555131,189,169 - 1,203,933 (+)NCBIChiLan1.0ChiLan1.0
POMT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19131,265,750 - 131,285,881 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9131,265,750 - 131,285,881 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09102,625,290 - 102,646,066 (+)NCBIMhudiblu_PPA_v0panPan3
POMT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl952,615,655 - 52,630,836 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1952,615,349 - 52,631,538 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pomt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648718,249,472 - 18,267,875 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1126,620,179 - 6,639,051 (-)NCBI
ChlSab1.1 Ensembl126,618,312 - 6,639,024 (-)Ensembl
Pomt1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247604,494,701 - 4,508,735 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 9 4 3 5 2 22 2 3 3
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000006286   ⟹   ENSSSCP00000006124
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1271,432,210 - 271,451,080 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043029   ⟹   ENSSSCP00000056986
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1271,432,210 - 271,447,824 (+)Ensembl
RefSeq Acc Id: XM_003122249   ⟹   XP_003122297
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11271,432,202 - 271,448,584 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654583   ⟹   XP_005654640
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11271,432,291 - 271,448,359 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654584   ⟹   XP_005654641
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11271,432,217 - 271,448,359 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654585   ⟹   XP_005654642
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11271,432,205 - 271,448,359 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013986968   ⟹   XP_013842422
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11271,432,210 - 271,448,359 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013986981   ⟹   XP_013842435
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11271,433,578 - 271,448,359 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070509   ⟹   XP_020926168
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11271,432,210 - 271,448,584 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070519   ⟹   XP_020926178
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11271,432,196 - 271,448,584 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020926178   ⟸   XM_021070519
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003122297   ⟸   XM_003122249
- Peptide Label: isoform X2
- UniProtKB: F1S0W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654642   ⟸   XM_005654585
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020926168   ⟸   XM_021070509
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013842422   ⟸   XM_013986968
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005654641   ⟸   XM_005654584
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005654640   ⟸   XM_005654583
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013842435   ⟸   XM_013986981
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSSSCP00000006124   ⟸   ENSSSCT00000006286
RefSeq Acc Id: ENSSSCP00000056986   ⟸   ENSSSCT00000043029
Protein Domains
MIR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005716 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000006124 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000056986 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006286 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000043029 ENTREZGENE, UniProtKB/TrEMBL
InterPro GlyclTrfase_39-like UniProtKB/TrEMBL
  Glyco_trans_39/83 UniProtKB/TrEMBL
  MIR_dom_sf UniProtKB/TrEMBL
  MIR_motif UniProtKB/TrEMBL
  PMT_4TMC UniProtKB/TrEMBL
KEGG Report ssc:100525803 UniProtKB/TrEMBL
NCBI Gene POMT1 ENTREZGENE
PANTHER PTHR10050 UniProtKB/TrEMBL
Pfam MIR UniProtKB/TrEMBL
  PMT UniProtKB/TrEMBL
  PMT_4TMC UniProtKB/TrEMBL
PROSITE MIR UniProtKB/TrEMBL
SMART MIR UniProtKB/TrEMBL
Superfamily-SCOP SSF82109 UniProtKB/TrEMBL
UniProt F1S0W3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:103155 ENTREZGENE