AMACR (alpha-methylacyl-CoA racemase) - Rat Genome Database

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Gene: AMACR (alpha-methylacyl-CoA racemase) Sus scrofa
Analyze
Symbol: AMACR (Ensembl: SLC45A2)
Name: alpha-methylacyl-CoA racemase (Ensembl:solute carrier family 45 member 2)
RGD ID: 14038679
Description: ENCODES a protein that exhibits alpha-methylacyl-CoA racemase activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); bile acid metabolic process (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH adenoma (ortholog); alpha-methylacyl-CoA racemase deficiency (ortholog); breast carcinoma (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1619,956,366 - 20,023,289 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,005,741 - 20,023,339 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21620,765,256 - 20,782,844 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:15679890   PMID:30032202  


Genomics

Comparative Map Data
AMACR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1619,956,366 - 20,023,289 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,005,741 - 20,023,339 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21620,765,256 - 20,782,844 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AMACR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38533,986,165 - 34,008,050 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl533,986,165 - 34,008,104 (-)EnsemblGRCh38hg38GRCh38
GRCh37533,986,270 - 34,008,155 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36534,023,652 - 34,043,963 (-)NCBINCBI36Build 36hg18NCBI36
Build 34534,023,658 - 34,043,963NCBI
Celera533,875,521 - 33,896,657 (-)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef533,965,051 - 33,986,185 (-)NCBIHuRef
CHM1_1533,988,659 - 34,009,789 (-)NCBICHM1_1
T2T-CHM13v2.0534,108,084 - 34,129,983 (-)NCBIT2T-CHM13v2.0
Amacr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391510,981,875 - 10,995,693 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1510,981,842 - 10,996,712 (+)EnsemblGRCm39 Ensembl
GRCm381510,981,756 - 10,996,624 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1510,981,756 - 10,996,626 (+)EnsemblGRCm38mm10GRCm38
MGSCv371510,911,511 - 10,926,379 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361510,926,481 - 10,941,349 (+)NCBIMGSCv36mm8
Celera1510,773,835 - 10,788,820 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.39NCBI
Amacr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8261,673,291 - 61,685,381 (+)NCBIGRCr8
mRatBN7.2259,946,158 - 59,958,255 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl259,946,153 - 59,958,255 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx267,055,385 - 67,067,396 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0265,176,896 - 65,188,909 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0260,178,272 - 60,190,287 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0260,949,276 - 60,961,342 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl260,949,256 - 60,961,326 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0283,723,119 - 83,735,166 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4260,332,292 - 60,344,326 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1260,260,524 - 60,272,557 (+)NCBI
Celera258,726,090 - 58,738,137 (-)NCBICelera
Cytogenetic Map2q16NCBI
Amacr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542619,570,070 - 19,580,818 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542619,570,179 - 19,580,920 (-)NCBIChiLan1.0ChiLan1.0
AMACR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2476,300,803 - 76,321,985 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1574,455,666 - 74,477,720 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0576,336,631 - 76,358,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1581,722,973 - 81,742,806 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl581,687,891 - 81,742,003 (+)Ensemblpanpan1.1panPan2
AMACR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,815,438 - 73,836,016 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,815,291 - 73,867,437 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha473,431,203 - 73,451,716 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0474,321,712 - 74,342,286 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl474,321,704 - 74,376,263 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1474,068,256 - 74,088,061 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0474,191,815 - 74,212,352 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,725,962 - 74,746,514 (+)NCBIUU_Cfam_GSD_1.0
Amacr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213224,282,991 - 224,299,409 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365187,072,403 - 7,088,929 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365187,072,436 - 7,088,927 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AMACR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,221,777 - 33,244,829 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl433,225,754 - 33,244,836 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607123,518,099 - 23,540,732 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Amacr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475920,495,980 - 20,510,582 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475920,495,697 - 20,506,343 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AMACR
782 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 4 21 3 2 5 12 12 21 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000018314   ⟹   ENSSSCP00000017818
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1619,961,238 - 19,999,311 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000018315   ⟹   ENSSSCP00000017819
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1619,958,315 - 20,023,289 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000072187   ⟹   ENSSSCP00000071434
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1619,956,366 - 19,999,311 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000075169   ⟹   ENSSSCP00000072911
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1619,956,366 - 19,999,311 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000075922   ⟹   ENSSSCP00000069979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1619,970,660 - 20,023,283 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000086392   ⟹   ENSSSCP00000073410
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1619,958,280 - 20,023,237 (-)Ensembl
RefSeq Acc Id: XM_003133873   ⟹   XP_003133921
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11620,005,741 - 20,023,339 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003133921   ⟸   XM_003133873
- UniProtKB: A0A8D1PW39 (UniProtKB/TrEMBL),   A0A8D1NIZ7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000071434   ⟸   ENSSSCT00000072187
Ensembl Acc Id: ENSSSCP00000072911   ⟸   ENSSSCT00000075169
Ensembl Acc Id: ENSSSCP00000017818   ⟸   ENSSSCT00000018314
Ensembl Acc Id: ENSSSCP00000073410   ⟸   ENSSSCT00000086392
Ensembl Acc Id: ENSSSCP00000069979   ⟸   ENSSSCT00000075922
Ensembl Acc Id: ENSSSCP00000017819   ⟸   ENSSSCT00000018315


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016821 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00015066111 UniProtKB/TrEMBL
  ENSSSCG00025029165 UniProtKB/TrEMBL
  ENSSSCG00030046724 UniProtKB/TrEMBL
  ENSSSCG00045029083 UniProtKB/TrEMBL
  ENSSSCG00050065926 UniProtKB/TrEMBL
  ENSSSCG00055005892 UniProtKB/TrEMBL
  ENSSSCG00065018694 UniProtKB/TrEMBL
  ENSSSCG00070008753 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018314.4 UniProtKB/TrEMBL
  ENSSSCT00000018315.5 UniProtKB/TrEMBL
  ENSSSCT00000075169.2 UniProtKB/TrEMBL
  ENSSSCT00000075922.2 UniProtKB/TrEMBL
  ENSSSCT00000086392.2 UniProtKB/TrEMBL
  ENSSSCT00015088519.1 UniProtKB/TrEMBL
  ENSSSCT00025039604.1 UniProtKB/TrEMBL
  ENSSSCT00030065152.1 UniProtKB/TrEMBL
  ENSSSCT00045049616.1 UniProtKB/TrEMBL
  ENSSSCT00050089779.1 UniProtKB/TrEMBL
  ENSSSCT00055011474.1 UniProtKB/TrEMBL
  ENSSSCT00065024831.1 UniProtKB/TrEMBL
  ENSSSCT00070016985.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
  3.30.1540.10 UniProtKB/TrEMBL
InterPro CoA-transferase_III UniProtKB/TrEMBL
  CoA-Trfase_fam_III UniProtKB/TrEMBL
  CoA-Trfase_III_dom3_sf UniProtKB/TrEMBL
  CoA-Trfase_III_dom_sf UniProtKB/TrEMBL
  MFS UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report ssc:100512020 UniProtKB/TrEMBL
NCBI Gene AMACR ENTREZGENE
PANTHER ALPHA-METHYLACYL-COA RACEMASE UniProtKB/TrEMBL
  MEMBRANE-ASSOCIATED TRANSPORTER PROTEIN UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 45 MEMBER 2 UniProtKB/TrEMBL
  SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE UniProtKB/TrEMBL
  SUGAR TRANSPORTER UniProtKB/TrEMBL
Pfam CoA_transf_3 UniProtKB/TrEMBL
  MFS_1 UniProtKB/TrEMBL
  MFS_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
  SSF89796 UniProtKB/TrEMBL
UniProt A0A5G2RAQ1_PIG UniProtKB/TrEMBL
  A0A5G2RE90_PIG UniProtKB/TrEMBL
  A0A5G2RFV6_PIG UniProtKB/TrEMBL
  A0A8D1NIZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PW39 ENTREZGENE, UniProtKB/TrEMBL
  F1SP14_PIG UniProtKB/TrEMBL
  F1SP15_PIG UniProtKB/TrEMBL