LRRC8C (leucine rich repeat containing 8 VRAC subunit C) - Rat Genome Database

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Gene: LRRC8C (leucine rich repeat containing 8 VRAC subunit C) Sus scrofa
Analyze
Symbol: LRRC8C
Name: leucine rich repeat containing 8 VRAC subunit C
RGD ID: 14038071
Description: ENCODES a protein that exhibits volume-sensitive anion channel activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); cellular response to osmotic stress (ortholog); fat cell differentiation (ortholog); ASSOCIATED WITH multiple sclerosis (ortholog); TIMES Syndrome (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine rich repeat containing 8 family member C; leucine-rich repeat-containing protein 8C; volume-regulated anion channel subunit LRRC8C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4126,957,105 - 127,037,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14126,957,099 - 127,079,042 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24138,996,955 - 139,119,829 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LRRC8C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4126,957,105 - 127,037,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14126,957,099 - 127,079,042 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24138,996,955 - 139,119,829 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC8C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,615,824 - 89,719,533 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,633,072 - 89,769,903 (+)EnsemblGRCh38hg38GRCh38
GRCh37190,098,679 - 90,185,092 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,871,350 - 89,953,169 (+)NCBINCBI36Build 36hg18NCBI36
Celera188,344,351 - 88,430,780 (+)NCBICelera
Cytogenetic Map1p22.2NCBI
HuRef188,215,951 - 88,302,419 (+)NCBIHuRef
CHM1_1190,213,622 - 90,300,056 (+)NCBICHM1_1
T2T-CHM13v2.0189,459,056 - 89,562,765 (+)NCBIT2T-CHM13v2.0
Lrrc8c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395105,666,850 - 105,760,884 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5105,667,254 - 105,760,884 (+)EnsemblGRCm39 Ensembl
GRCm385105,519,345 - 105,613,018 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5105,519,388 - 105,613,018 (+)EnsemblGRCm38mm10GRCm38
MGSCv375105,948,490 - 106,037,973 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365105,759,773 - 105,849,256 (+)NCBIMGSCv36mm8
Celera5102,631,726 - 102,729,227 (+)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.68NCBI
Lrrc8c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8144,528,721 - 4,621,259 (-)NCBIGRCr8
mRatBN7.2144,223,901 - 4,315,590 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl144,227,832 - 4,315,249 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx144,224,741 - 4,312,023 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0145,524,900 - 5,612,184 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0144,230,446 - 4,317,709 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0145,283,655 - 5,378,738 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl145,283,647 - 5,378,726 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0145,274,372 - 5,369,435 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4145,306,227 - 5,393,820 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1145,306,353 - 5,393,463 (-)NCBI
Celera144,390,675 - 4,477,877 (-)NCBICelera
Cytogenetic Map14p22NCBI
Lrrc8c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554234,460,212 - 4,494,317 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554234,460,212 - 4,494,317 (-)NCBIChiLan1.0ChiLan1.0
LRRC8C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21137,298,993 - 137,386,330 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11136,454,826 - 136,542,198 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,299,691 - 92,384,733 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1191,001,695 - 91,134,865 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,105,551 - 91,138,447 (+)Ensemblpanpan1.1panPan2
LRRC8C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1658,895,769 - 58,932,729 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl658,899,996 - 58,932,729 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha661,605,421 - 61,690,225 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0659,407,523 - 59,492,055 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl659,409,555 - 59,493,796 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1658,981,235 - 59,065,445 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0658,934,585 - 59,019,172 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0659,414,770 - 59,499,275 (-)NCBIUU_Cfam_GSD_1.0
Lrrc8c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505899,823,337 - 99,897,484 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365379,049,944 - 9,124,619 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365379,050,495 - 9,124,649 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC8C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12043,752,341 - 43,842,958 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2043,752,370 - 43,842,766 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603374,090,984 - 74,181,626 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrc8c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247428,009,901 - 8,096,652 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247428,010,849 - 8,096,567 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LRRC8C
5544 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000007575   ⟹   ENSSSCP00000007374
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4126,957,110 - 127,037,216 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000044064   ⟹   ENSSSCP00000059538
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4126,957,105 - 127,037,159 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000071025   ⟹   ENSSSCP00000067877
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4126,931,849 - 127,079,843 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000071159   ⟹   ENSSSCP00000068510
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4126,957,104 - 127,037,587 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000085453   ⟹   ENSSSCP00000062043
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4126,959,435 - 127,037,159 (-)Ensembl
RefSeq Acc Id: XM_001929205   ⟹   XP_001929240
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14126,957,099 - 127,079,042 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663701   ⟹   XP_005663758
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14126,957,099 - 127,037,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997403   ⟹   XP_013852857
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14126,957,099 - 127,000,968 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001929240   ⟸   XM_001929205
- UniProtKB: A0A8D1U052 (UniProtKB/TrEMBL),   F1S4E4 (UniProtKB/TrEMBL),   A0A8D0UIW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663758   ⟸   XM_005663701
- UniProtKB: A0A8D1U052 (UniProtKB/TrEMBL),   F1S4E4 (UniProtKB/TrEMBL),   A0A8D0UIW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013852857   ⟸   XM_013997403
- UniProtKB: A0A8D1U052 (UniProtKB/TrEMBL),   F1S4E4 (UniProtKB/TrEMBL),   A0A8D0UIW1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000059538   ⟸   ENSSSCT00000044064
Ensembl Acc Id: ENSSSCP00000062043   ⟸   ENSSSCT00000085453
Ensembl Acc Id: ENSSSCP00000067877   ⟸   ENSSSCT00000071025
Ensembl Acc Id: ENSSSCP00000068510   ⟸   ENSSSCT00000071159
Ensembl Acc Id: ENSSSCP00000007374   ⟸   ENSSSCT00000007575

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006917 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015032242 UniProtKB/TrEMBL
  ENSSSCG00025015028 UniProtKB/TrEMBL
  ENSSSCG00030018889 UniProtKB/TrEMBL
  ENSSSCG00035006346 UniProtKB/TrEMBL
  ENSSSCG00040061815 UniProtKB/TrEMBL
  ENSSSCG00045016259 UniProtKB/TrEMBL
  ENSSSCG00050014447 UniProtKB/TrEMBL
  ENSSSCG00055010902 UniProtKB/TrEMBL
  ENSSSCG00060018967 UniProtKB/TrEMBL
  ENSSSCG00065023495 UniProtKB/TrEMBL
  ENSSSCG00070014856 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007575 ENTREZGENE
  ENSSSCT00000007575.5 UniProtKB/TrEMBL
  ENSSSCT00000044064.3 UniProtKB/TrEMBL
  ENSSSCT00015042661.1 UniProtKB/TrEMBL
  ENSSSCT00015042754.1 UniProtKB/TrEMBL
  ENSSSCT00025020092.1 UniProtKB/TrEMBL
  ENSSSCT00025020110.1 UniProtKB/TrEMBL
  ENSSSCT00025020125.1 UniProtKB/TrEMBL
  ENSSSCT00030026074.1 UniProtKB/TrEMBL
  ENSSSCT00030026079.1 UniProtKB/TrEMBL
  ENSSSCT00030026082.1 UniProtKB/TrEMBL
  ENSSSCT00035007908.1 UniProtKB/TrEMBL
  ENSSSCT00035007910.1 UniProtKB/TrEMBL
  ENSSSCT00035007911.1 UniProtKB/TrEMBL
  ENSSSCT00035007914.1 UniProtKB/TrEMBL
  ENSSSCT00035007918.1 UniProtKB/TrEMBL
  ENSSSCT00040084106.1 UniProtKB/TrEMBL
  ENSSSCT00040084142.1 UniProtKB/TrEMBL
  ENSSSCT00040084169.1 UniProtKB/TrEMBL
  ENSSSCT00045027671.1 UniProtKB/TrEMBL
  ENSSSCT00045027709.1 UniProtKB/TrEMBL
  ENSSSCT00045027731.1 UniProtKB/TrEMBL
  ENSSSCT00050019510.1 UniProtKB/TrEMBL
  ENSSSCT00050019516.1 UniProtKB/TrEMBL
  ENSSSCT00050019523.1 UniProtKB/TrEMBL
  ENSSSCT00055021404.1 UniProtKB/TrEMBL
  ENSSSCT00055021426.1 UniProtKB/TrEMBL
  ENSSSCT00055021439.1 UniProtKB/TrEMBL
  ENSSSCT00060025518.1 UniProtKB/TrEMBL
  ENSSSCT00060025524.1 UniProtKB/TrEMBL
  ENSSSCT00065031263.1 UniProtKB/TrEMBL
  ENSSSCT00065031268.1 UniProtKB/TrEMBL
  ENSSSCT00065031272.1 UniProtKB/TrEMBL
  ENSSSCT00070029144.1 UniProtKB/TrEMBL
  ENSSSCT00070029157.1 UniProtKB/TrEMBL
  ENSSSCT00070029165.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_5 UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRR_domain-containing UniProtKB/TrEMBL
  LRRC8_Pannexin-like UniProtKB/TrEMBL
NCBI Gene LRRC8C ENTREZGENE
PANTHER LEUCINE RICH REPEAT CONTAINING 8 VRAC SUBUNIT B UniProtKB/TrEMBL
  PTHR48051 UniProtKB/TrEMBL
  VOLUME-REGULATED ANION CHANNEL SUBUNIT LRRC8C-LIKE UniProtKB/TrEMBL
Pfam LRR_1 UniProtKB/TrEMBL
  LRR_5 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
  Pannexin_like UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A287BSW1_PIG UniProtKB/TrEMBL
  A0A8D0QYJ3_PIG UniProtKB/TrEMBL
  A0A8D0UIW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VUH7_PIG UniProtKB/TrEMBL
  A0A8D0YKB9_PIG UniProtKB/TrEMBL
  A0A8D0YLG5_PIG UniProtKB/TrEMBL
  A0A8D1CKP7_PIG UniProtKB/TrEMBL
  A0A8D1FI37_PIG UniProtKB/TrEMBL
  A0A8D1QBI5_PIG UniProtKB/TrEMBL
  A0A8D1T3W9_PIG UniProtKB/TrEMBL
  A0A8D1U052 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1U054_PIG UniProtKB/TrEMBL
  F1S4E4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98087 ENTREZGENE