EDIL3 (EGF like repeats and discoidin domains 3) - Rat Genome Database

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Gene: EDIL3 (EGF like repeats and discoidin domains 3) Sus scrofa
Analyze
Symbol: EDIL3
Name: EGF like repeats and discoidin domains 3
RGD ID: 14035821
Description: ENCODES a protein that exhibits calcium ion binding (inferred); signaling receptor activity (inferred); INVOLVED IN positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); osteoarthritis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EGF-like repeat and discoidin I-like domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl292,123,345 - 92,554,191 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1292,122,495 - 92,554,351 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2294,207,480 - 94,655,178 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
EDIL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl292,123,345 - 92,554,191 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1292,122,495 - 92,554,351 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2294,207,480 - 94,655,178 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EDIL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38583,940,554 - 84,384,880 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl583,940,554 - 84,384,880 (-)EnsemblGRCh38hg38GRCh38
GRCh37583,236,373 - 83,680,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36583,273,882 - 83,716,367 (-)NCBINCBI36Build 36hg18NCBI36
Build 34583,273,881 - 83,716,367NCBI
Celera579,143,254 - 79,585,747 (-)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef578,443,483 - 78,887,547 (-)NCBIHuRef
CHM1_1582,669,378 - 83,113,659 (-)NCBICHM1_1
T2T-CHM13v2.0584,429,063 - 84,873,508 (-)NCBIT2T-CHM13v2.0
Edil3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391388,969,591 - 89,471,344 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1388,969,591 - 89,471,342 (+)EnsemblGRCm39 Ensembl
GRCm381388,821,472 - 89,323,225 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1388,821,472 - 89,323,223 (+)EnsemblGRCm38mm10GRCm38
MGSCv371388,961,077 - 89,462,830 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361389,295,717 - 89,797,065 (+)NCBIMGSCv36mm8
Celera1392,422,307 - 92,915,061 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1345.3NCBI
Edil3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8221,625,604 - 22,140,380 (+)NCBIGRCr8
mRatBN7.2219,890,396 - 20,405,028 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl219,890,373 - 20,405,008 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0217,616,116 - 18,128,514 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl217,616,401 - 18,128,512 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0217,491,420 - 18,004,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4219,057,636 - 19,346,196 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera216,040,531 - 16,554,059 (+)NCBICelera
Cytogenetic Map2q12NCBI
Edil3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541826,391,299 - 26,680,553 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541826,391,309 - 26,680,553 (+)NCBIChiLan1.0ChiLan1.0
EDIL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2430,916,371 - 31,358,586 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1529,069,996 - 29,512,211 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0530,895,036 - 31,337,176 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1531,215,261 - 31,657,076 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl531,215,260 - 31,654,250 (+)Ensemblpanpan1.1panPan2
EDIL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1323,417,889 - 23,811,270 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl323,417,835 - 23,808,538 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha324,656,031 - 25,049,581 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0323,317,370 - 23,710,657 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl323,317,283 - 23,710,644 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1323,275,472 - 23,668,218 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0323,247,538 - 23,640,459 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0323,534,804 - 23,928,011 (+)NCBIUU_Cfam_GSD_1.0
Edil3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213179,234,376 - 179,627,376 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364692,996,348 - 3,391,721 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364692,998,424 - 3,391,386 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EDIL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1478,047,780 - 78,491,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl478,047,503 - 78,491,075 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604926,961,846 - 27,416,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Edil3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247434,057,687 - 4,481,888 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247434,059,274 - 4,481,999 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EDIL3
10941 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 20 1
Low 8 2 3 3 1 2
Below cutoff 2 1 4 2 1 3

Sequence


RefSeq Acc Id: ENSSSCT00000031311   ⟹   ENSSSCP00000025933
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl292,123,345 - 92,554,191 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000045738   ⟹   ENSSSCP00000056509
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl292,123,345 - 92,554,262 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000070235   ⟹   ENSSSCP00000065722
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl292,123,418 - 92,554,189 (-)Ensembl
RefSeq Acc Id: XM_005661542   ⟹   XP_005661599
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1292,122,495 - 92,554,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084514   ⟹   XP_020940173
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1292,122,495 - 92,554,266 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005661599   ⟸   XM_005661542
- Peptide Label: isoform X1
- UniProtKB: A0A8D1CV08 (UniProtKB/TrEMBL),   A0A480TMH7 (UniProtKB/TrEMBL),   A0A8D1NQT5 (UniProtKB/TrEMBL),   A0A8D0HYM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020940173   ⟸   XM_021084514
- Peptide Label: isoform X2
- UniProtKB: A0A8D1YVP3 (UniProtKB/TrEMBL),   I3LPA7 (UniProtKB/TrEMBL),   A0A8D1NW32 (UniProtKB/TrEMBL),   A0A8D0SQF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000065722   ⟸   ENSSSCT00000070235
RefSeq Acc Id: ENSSSCP00000056509   ⟸   ENSSSCT00000045738
RefSeq Acc Id: ENSSSCP00000025933   ⟸   ENSSSCT00000031311
Protein Domains
EGF-like   F5/8 type C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026780 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005007160 UniProtKB/TrEMBL
  ENSSSCG00025058543 UniProtKB/TrEMBL
  ENSSSCG00035043311 UniProtKB/TrEMBL
  ENSSSCG00045009084 UniProtKB/TrEMBL
  ENSSSCG00050072797 UniProtKB/TrEMBL
  ENSSSCG00055019109 UniProtKB/TrEMBL
  ENSSSCG00065043711 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000031311 ENTREZGENE
  ENSSSCT00000031311.3 UniProtKB/TrEMBL
  ENSSSCT00005010731.1 UniProtKB/TrEMBL
  ENSSSCT00005010756.1 UniProtKB/TrEMBL
  ENSSSCT00005010855.1 UniProtKB/TrEMBL
  ENSSSCT00025080166.1 UniProtKB/TrEMBL
  ENSSSCT00025080392.1 UniProtKB/TrEMBL
  ENSSSCT00035057541.1 UniProtKB/TrEMBL
  ENSSSCT00035057544.1 UniProtKB/TrEMBL
  ENSSSCT00045015436.1 UniProtKB/TrEMBL
  ENSSSCT00050099409.1 UniProtKB/TrEMBL
  ENSSSCT00050099423.1 UniProtKB/TrEMBL
  ENSSSCT00055037494.1 UniProtKB/TrEMBL
  ENSSSCT00065059805.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_CS UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
NCBI Gene EDIL3 ENTREZGENE
PANTHER F5/8 TYPE C DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  NEUROPILIN-1 UniProtKB/TrEMBL
Pfam EGF UniProtKB/TrEMBL
  F5_F8_type_C UniProtKB/TrEMBL
  hEGF UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  FA58C_1 UniProtKB/TrEMBL
  FA58C_2 UniProtKB/TrEMBL
  FA58C_3 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
UniProt A0A480TMH7 ENTREZGENE
  A0A8D0HYM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SQF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CV08 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NQT5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NW32 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YVP3 ENTREZGENE, UniProtKB/TrEMBL
  I3LPA7 ENTREZGENE
UniProt Secondary A0A480TMH7 UniProtKB/TrEMBL
  I3LPA7 UniProtKB/TrEMBL
VGNC ID VGNC:99642 ENTREZGENE