LOC100625134 (phospholipid-transporting ATPase IB) - Rat Genome Database

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Gene: LOC100625134 (phospholipid-transporting ATPase IB) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100625134
Name: phospholipid-transporting ATPase IB
RGD ID: 14034775
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATPase-coupled intramembrane lipid transporter activity (inferred); INVOLVED IN lipid translocation (inferred); neuron development (inferred); phospholipid translocation (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase, aminophospholipid transporter, class I, type 8A, member 2
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1113,839,083 - 4,000,588 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2113,257,286 - 3,441,676 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100625134
8857 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system reproductive system respiratory system
High
Medium
Low 3 1 20 2
Below cutoff 3 2 2 1 3 1

Sequence


Reference Sequences
RefSeq Acc Id: XM_021065491   ⟹   XP_020921150
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1113,839,083 - 4,000,588 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020921150   ⟸   XM_021065491
- UniProtKB: A0A4X1TSK8 (UniProtKB/TrEMBL),   I3LGF0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
P-type ATPase C-terminal   P-type ATPase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023771 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00045012912 UniProtKB/TrEMBL
  ENSSSCG00070011267 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028952 ENTREZGENE
  ENSSSCT00000028952.4 UniProtKB/TrEMBL
  ENSSSCT00000042573.3 UniProtKB/TrEMBL
  ENSSSCT00000057253.3 UniProtKB/TrEMBL
  ENSSSCT00000061132.3 UniProtKB/TrEMBL
  ENSSSCT00000092419.1 UniProtKB/TrEMBL
  ENSSSCT00000092560.1 UniProtKB/TrEMBL
  ENSSSCT00000092874.1 UniProtKB/TrEMBL
  ENSSSCT00000098288.1 UniProtKB/TrEMBL
  ENSSSCT00000099340.1 UniProtKB/TrEMBL
  ENSSSCT00000100885.1 UniProtKB/TrEMBL
  ENSSSCT00045025787.1 UniProtKB/TrEMBL
  ENSSSCT00070024407.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
InterPro ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IV UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene LOC100625134 ENTREZGENE
PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/TrEMBL
  PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A286ZW47_PIG UniProtKB/TrEMBL
  A0A287A265_PIG UniProtKB/TrEMBL
  A0A287BIE0_PIG UniProtKB/TrEMBL
  A0A4X1TSK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FBZ6_PIG UniProtKB/TrEMBL
  A0A8W4FC57_PIG UniProtKB/TrEMBL
  A0A8W4FCH1_PIG UniProtKB/TrEMBL
  A0A8W4FII2_PIG UniProtKB/TrEMBL
  A0A8W4FJ58_PIG UniProtKB/TrEMBL
  A0A8W4FJ83_PIG UniProtKB/TrEMBL
  I3LGF0 ENTREZGENE, UniProtKB/TrEMBL