ETV3L (ETS variant transcription factor 3 like)

Gene: ETV3L (ETS variant transcription factor 3 like) Sus scrofa

Analyze

Symbol:

ETV3L

Name:

ETS variant transcription factor 3 like

RGD ID:

14034431

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN cell differentiation (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ETS translocation variant 3-like protein; ETS variant 3 like

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	93,005,259 - 93,011,259 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	101,463,709 - 101,469,951 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ETV3L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	93,005,259 - 93,011,259 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	101,463,709 - 101,469,951 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ETV3L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	157,092,043 - 157,099,808 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	157,092,043 - 157,112,412 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	157,061,835 - 157,069,600 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	155,328,460 - 155,336,224 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	130,133,025 - 130,140,792 (-)	NCBI		Celera
Cytogenetic Map	1	q23.1	NCBI
HuRef	1	128,420,120 - 128,427,886 (-)	NCBI		HuRef
CHM1_1	1	158,458,229 - 158,465,994 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	156,228,899 - 156,236,665 (-)	NCBI		T2T-CHM13v2.0

Etv3l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	87,457,364 - 87,468,412 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	87,457,406 - 87,468,416 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	87,549,887 - 87,561,105 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	87,550,099 - 87,561,109 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	87,358,681 - 87,364,132 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	87,640,686 - 87,646,489 (+)	NCBI		MGSCv36	mm8
MGSCv36	3	88,337,358 - 88,346,483 (+)	NCBI		MGSCv36	mm8
Celera	3	87,587,703 - 87,593,636 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	38.19	NCBI

Etv3l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	175,289,442 - 175,302,347 (+)	NCBI		GRCr8
mRatBN7.2	2	172,991,616 - 173,004,424 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	172,991,833 - 173,004,436 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	180,139,977 - 180,152,793 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	178,162,309 - 178,175,131 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	172,751,700 - 172,764,511 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	186,899,060 - 186,911,913 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	186,899,324 - 186,911,903 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	206,303,795 - 206,316,657 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	179,591,716 - 179,604,304 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	166,943,368 - 166,955,920 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Etv3l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955545	3,121,363 - 3,132,748 (-)	NCBI	ChiLan1.0	ChiLan1.0

ETV3L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	92,740,797 - 92,752,945 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	92,475,542 - 92,487,234 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	132,434,699 - 132,443,330 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	136,256,336 - 136,264,100 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	136,256,336 - 136,264,100 (-)	Ensembl	panpan1.1		panPan2

ETV3L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	40,986,870 - 40,991,742 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	40,980,558 - 40,991,739 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	40,468,274 - 40,479,932 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	40,843,435 - 40,855,101 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	40,843,347 - 40,854,119 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	40,625,752 - 40,637,401 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	40,678,656 - 40,690,319 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	40,962,001 - 40,973,653 (+)	NCBI		UU_Cfam_GSD_1.0

Etv3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,175,706 - 27,183,010 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936580	6,206,656 - 6,213,243 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ETV3L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	6,774,316 - 6,783,521 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	6,774,898 - 6,781,445 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	6,049,826 - 6,057,226 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in ETV3L
184 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001929495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU151863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01130530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_001929495 ⟹ XP_001929530

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	93,005,259 - 93,011,259 (+)	NCBI

Sequence:

show sequence

ATGCACTGTGGCTGCATGGCCGACGGTGTCCCTGCCATCGCTGGCAACTCCTGGATCTCAGGCC
TGGCCTTCCCCGACTGGGCCTACAAAGCCGAGTCATCCCCAGGCTCCCGGCAGATCCAGCTGTG
GCACTTTATCCTGGAGCTGCTGCAGAAGGAGGAGTTCCGCCATGTCATCGCCTGGCAGCAGGGA
GAATACGGGGAATTCGTCATCAAGGATCCCGACGAGGTGGCCCGCCTCTGGGGCCGCAGGAAGT
GCAAACCACAGATGAATTATGACAAGCTGAGCCGGGCCCTGAGGTATTATTACAATAAGAGGAT
CCTGCACAAGACCAAAGGCAAAAGGTTCACTTACAAGTTCAACTTCAGCAAGCTCATCATAGTC
AACTATCCCCTGTGGGAGCTGCGGGCACCCCCAAGTCCCCACTTGCTGCTGGGGGCCCCTGCCC
TGTTTCGCCCGGCACTGGTGCCCATGGGCGTGCAGAGTGAGCTCCTGCACAGCATGCTGTCCAC
CCATCGGGCCATGGCAGAGCAGCTGGCCGGAGAGCGGACCCCTCGAGGGCCACCAGAGGCCTCT
AGGGACAAGAAGGGGAGCAGCAACAGTATCCACCGACTTGGACTTGGCTCTGCCCCAGCCCCCT
GCCGGCTCGGCCCCTGCTGCCATTTGGGGAGCCCCCAAGACGAGCTGCCCAGTTTCGCCTCCTT
CACCCCGCCCCTGCCACCCCCGGTCCCCTCCGACTGGCCCCGCCTCTCAGGGCCCTTCCTGCCC
CCTCTCCCCGTAGAGCAGCCCTTCCCAGGATCCTGCACGCCCGACGCCCTGCTCCCAGAGCCCG
CGCGCCCCCCAGCGACCCGGCATTTCCCGGGGCTCCCTCTGTTGGCCGGGCTGGCCCAGGGGGC
TGGGGAGAGGCTCCGGCTCTTGTCCCTGAGGCCCGAGGGGCTGGAGGTAAAGCCCGATCCCGCG
ATGGATCCCAGGGAGGGTTTCTCCTCAGAAAGGCGGGGGCCCAAACCTGGAGAGGAAAACCCCG
GGTCCCGCGATCTGGAGAACTTTAAAGCAGTGTGGCCCCTGGATCCTCCTTAACCGGGGCGGAA
GATG

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Protein Sequences


Protein RefSeqs	XP_001929530	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00025002691.1
	ENSSSCP00025002692.1
	ENSSSCP00040007596.1
	ENSSSCP00040007611.1
	ENSSSCP00045043961.1
	ENSSSCP00045044021.1
	ENSSSCP00050009280.1
	ENSSSCP00055003769.1
	ENSSSCP00055003780.1
	ENSSSCP00060000940.1
	ENSSSCP00060000944.1
	ENSSSCP00065026396.1
	ENSSSCP00065026399.1
	ENSSSCP00070046433.1
	ENSSSCP00070046445.1

RefSeq Acc Id:

XP_001929530 ⟸ XM_001929495

- UniProtKB:

A0A4X1VS61 (UniProtKB/TrEMBL), A0A8D0QTS9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MHCGCMADGVPAIAGNSWISGLAFPDWAYKAESSPGSRQIQLWHFILELLQKEEFRHVIAWQQG
EYGEFVIKDPDEVARLWGRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFSKLIIV
NYPLWELRAPPSPHLLLGAPALFRPALVPMGVQSELLHSMLSTHRAMAEQLAGERTPRGPPEAS
RDKKGSSNSIHRLGLGSAPAPCRLGPCCHLGSPQDELPSFASFTPPLPPPVPSDWPRLSGPFLP
PLPVEQPFPGSCTPDALLPEPARPPATRHFPGLPLLAGLAQGAGERLRLLSLRPEGLEVKPDPA
MDPREGFSSERRGPKPGEENPGSRDLENFKAVWPLDPP

hide sequence

Protein Domains

ETS

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00025004763	UniProtKB/TrEMBL
	ENSSSCG00040013912	UniProtKB/TrEMBL
	ENSSSCG00045036263	UniProtKB/TrEMBL
	ENSSSCG00050016196	UniProtKB/TrEMBL
	ENSSSCG00055002535	UniProtKB/TrEMBL
	ENSSSCG00060002413	UniProtKB/TrEMBL
	ENSSSCG00065044564	UniProtKB/TrEMBL
	ENSSSCG00070027280	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00025006456.1	UniProtKB/TrEMBL
	ENSSSCT00025006457.1	UniProtKB/TrEMBL
	ENSSSCT00040018567.1	UniProtKB/TrEMBL
	ENSSSCT00040018611.1	UniProtKB/TrEMBL
	ENSSSCT00045062422.1	UniProtKB/TrEMBL
	ENSSSCT00045062491.1	UniProtKB/TrEMBL
	ENSSSCT00050022059.1	UniProtKB/TrEMBL
	ENSSSCT00055004884.1	UniProtKB/TrEMBL
	ENSSSCT00055004900.1	UniProtKB/TrEMBL
	ENSSSCT00060002952.1	UniProtKB/TrEMBL
	ENSSSCT00060002964.1	UniProtKB/TrEMBL
	ENSSSCT00065060952.1	UniProtKB/TrEMBL
	ENSSSCT00065060958.1	UniProtKB/TrEMBL
	ENSSSCT00070054737.1	UniProtKB/TrEMBL
	ENSSSCT00070054756.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	Ets_dom	UniProtKB/TrEMBL
	ETS_fam	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	ETV3L	ENTREZGENE
PANTHER	ETS TRANSLOCATION VARIANT 3-LIKE PROTEIN	UniProtKB/TrEMBL
	PTHR11849	UniProtKB/TrEMBL
Pfam	Ets	UniProtKB/TrEMBL
PRINTS	ETSDOMAIN	UniProtKB/TrEMBL
PROSITE	ETS_DOMAIN_1	UniProtKB/TrEMBL
	ETS_DOMAIN_2	UniProtKB/TrEMBL
	ETS_DOMAIN_3	UniProtKB/TrEMBL
SMART	ETS	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A4X1VS61	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VYU3_PIG	UniProtKB/TrEMBL
	A0A8D0QTS9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-09-18	ETV3L	ETS variant transcription factor 3 like	ETV3L	ETS variant 3 like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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