CLDN5 (claudin 5) - Rat Genome Database

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Gene: CLDN5 (claudin 5) Sus scrofa
Analyze
Symbol: CLDN5
Name: claudin 5
RGD ID: 14033735
Description: ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN establishment of endothelial barrier; negative regulation of complement-dependent cytotoxicity; myelination (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN cell-cell junction; lateral plasma membrane (ortholog); paranode region of axon (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: claudin-5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,161,042 - 51,163,482 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,161,490 - 51,162,382 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,778,542 - 54,779,434 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:24280217   PMID:30032202  


Genomics

Comparative Map Data
CLDN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,161,042 - 51,163,482 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,161,490 - 51,162,382 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,778,542 - 54,779,434 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,523,024 - 19,525,337 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,523,024 - 19,527,545 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,510,547 - 19,512,860 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,890,550 - 17,892,860 (-)NCBINCBI36Build 36hg18NCBI36
Build 342217,885,103 - 17,887,414NCBI
Celera223,362,807 - 3,365,120 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef223,131,378 - 3,133,692 (-)NCBIHuRef
CHM1_12219,510,114 - 19,512,427 (-)NCBICHM1_1
T2T-CHM13v2.02219,899,865 - 19,902,178 (-)NCBIT2T-CHM13v2.0
Cldn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,595,597 - 18,597,012 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,595,597 - 18,597,012 (+)EnsemblGRCm39 Ensembl
GRCm381618,776,847 - 18,778,262 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,776,847 - 18,778,262 (+)EnsemblGRCm38mm10GRCm38
MGSCv371618,776,940 - 18,778,353 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361618,690,410 - 18,691,823 (+)NCBIMGSCv36mm8
Celera1619,350,901 - 19,352,314 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.63NCBI
Cldn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81195,717,172 - 95,718,598 (-)NCBIGRCr8
mRatBN7.21182,212,822 - 82,214,248 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,211,475 - 82,214,992 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,944,303 - 90,945,729 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01183,605,524 - 83,606,950 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,659,043 - 82,660,469 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,356,292 - 86,357,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,356,294 - 86,357,718 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,458,258 - 89,459,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1180,993,136 - 80,994,562 (-)NCBICelera
Cytogenetic Map11q23NCBI
Cldn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,509,676 - 18,510,332 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,509,501 - 18,511,267 (+)NCBIChiLan1.0ChiLan1.0
CLDN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22329,148,325 - 29,150,156 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,696,053 - 31,697,888 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,282,215 - 2,286,724 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12217,957,605 - 17,962,121 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2217,958,182 - 17,959,093 (-)Ensemblpanpan1.1panPan2
CLDN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12629,702,464 - 29,704,950 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,703,683 - 29,704,339 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2629,657,506 - 29,659,994 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,103,894 - 31,106,387 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,104,951 - 31,106,379 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,151,222 - 29,153,712 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02628,776,939 - 28,779,430 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02629,862,380 - 29,864,535 (+)NCBIUU_Cfam_GSD_1.0
Cldn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,296,955 - 139,298,554 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,456,166 - 3,456,822 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,455,508 - 3,457,053 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,227,881 - 6,230,199 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,228,965 - 6,229,621 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666085703,479 - 705,842 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldn5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624747164,761 - 165,417 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624747164,113 - 166,502 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CLDN5
7 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000072269   ⟹   ENSSSCP00000060422
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1451,161,042 - 51,163,482 (-)Ensembl
RefSeq Acc Id: NM_001161636   ⟹   NP_001155108
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11451,161,490 - 51,162,382 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001155108   ⟸   NM_001161636
- UniProtKB: C3VML1 (UniProtKB/TrEMBL),   A0A8D1SRL8 (UniProtKB/TrEMBL),   A0A4X1UTS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000060422   ⟸   ENSSSCT00000072269


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000041667 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015010223 UniProtKB/TrEMBL
  ENSSSCG00025065167 UniProtKB/TrEMBL
  ENSSSCG00030070677 UniProtKB/TrEMBL
  ENSSSCG00035038814 UniProtKB/TrEMBL
  ENSSSCG00040067644 UniProtKB/TrEMBL
  ENSSSCG00045005217 UniProtKB/TrEMBL
  ENSSSCG00050075828 UniProtKB/TrEMBL
  ENSSSCG00055018937 UniProtKB/TrEMBL
  ENSSSCG00060009839 UniProtKB/TrEMBL
  ENSSSCG00065078437 UniProtKB/TrEMBL
  ENSSSCG00070019200 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000072269 ENTREZGENE
  ENSSSCT00000072269.2 UniProtKB/TrEMBL
  ENSSSCT00015013386.1 UniProtKB/TrEMBL
  ENSSSCT00025089420.1 UniProtKB/TrEMBL
  ENSSSCT00030098848.1 UniProtKB/TrEMBL
  ENSSSCT00035051518.1 UniProtKB/TrEMBL
  ENSSSCT00040092516.1 UniProtKB/TrEMBL
  ENSSSCT00045008660.1 UniProtKB/TrEMBL
  ENSSSCT00050104041.1 UniProtKB/TrEMBL
  ENSSSCT00055037047.1 UniProtKB/TrEMBL
  ENSSSCT00060012727.1 UniProtKB/TrEMBL
  ENSSSCT00065108705.1 UniProtKB/TrEMBL
  ENSSSCT00070037919.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  Claudin5 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report ssc:396997 UniProtKB/TrEMBL
NCBI Gene CLDN5 ENTREZGENE
PANTHER CLAUDIN-5 UniProtKB/TrEMBL
  PTHR12002 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS CLAUDIN UniProtKB/TrEMBL
  CLAUDIN5 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt A0A4X1UTS2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SRL8 ENTREZGENE, UniProtKB/TrEMBL
  C3VML1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:107377 ENTREZGENE