RPS20 (ribosomal protein S20) - Rat Genome Database

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Gene: RPS20 (ribosomal protein S20) Sus scrofa
Analyze
Symbol: RPS20
Name: ribosomal protein S20
RGD ID: 14033695
Description: ENCODES a protein that exhibits MDM2/MDM4 family protein binding (inferred); RNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN positive regulation of signal transduction by p53 class mediator (inferred); translation (inferred); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); Hereditary Neoplastic Syndromes (ortholog); Lynch syndrome (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane; cytosolic small ribosomal subunit; cytosolic ribosome (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 40S ribosomal protein S20; small ribosomal subunit protein uS10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl475,762,209 - 75,769,955 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1475,762,209 - 75,763,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2482,679,936 - 82,681,176 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:24930395   PMID:30032202  


Genomics

Comparative Map Data
RPS20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl475,762,209 - 75,769,955 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1475,762,209 - 75,763,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2482,679,936 - 82,681,176 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38856,067,254 - 56,074,506 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl856,067,254 - 56,074,510 (-)EnsemblGRCh38hg38GRCh38
GRCh37856,979,813 - 56,987,065 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36857,148,167 - 57,149,623 (-)NCBINCBI36Build 36hg18NCBI36
Build 34857,148,168 - 57,149,623NCBI
Celera852,972,573 - 52,978,977 (-)NCBICelera
Cytogenetic Map8q12.1NCBI
HuRef852,448,024 - 52,454,627 (-)NCBIHuRef
CHM1_1857,032,188 - 57,038,581 (-)NCBICHM1_1
T2T-CHM13v2.0856,444,256 - 56,451,508 (-)NCBIT2T-CHM13v2.0
Rps20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3943,831,334 - 3,835,600 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl43,831,334 - 3,835,665 (-)EnsemblGRCm39 Ensembl
GRCm3843,831,584 - 3,835,655 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl43,831,334 - 3,835,665 (-)EnsemblGRCm38mm10GRCm38
MGSCv3743,761,620 - 3,762,747 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3643,761,620 - 3,762,747 (-)NCBIMGSCv36mm8
Celera43,790,149 - 3,791,280 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map42.14NCBI
Rps20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8521,616,687 - 21,618,068 (-)NCBIGRCr8
mRatBN7.2516,819,095 - 16,820,476 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,430,259 - 22,430,740 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl94,159,021 - 4,159,547 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl516,819,304 - 16,820,475 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx519,060,230 - 19,061,611 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0520,658,718 - 20,660,099 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0520,410,210 - 20,411,591 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0516,706,052 - 16,707,214 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl516,706,082 - 16,706,909 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0521,486,034 - 21,487,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4517,119,797 - 17,120,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1517,119,812 - 17,120,942 (-)NCBI
Celera516,183,218 - 16,184,380 (-)NCBICelera
Cytogenetic Map5q12NCBI
Rps20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545415,151,065 - 15,152,301 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545415,151,065 - 15,152,301 (-)NCBIChiLan1.0ChiLan1.0
RPS20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2771,731,012 - 71,732,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1847,455,398 - 47,457,097 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0852,519,658 - 52,521,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1849,890,269 - 49,891,806 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl849,886,952 - 49,891,806 (-)Ensemblpanpan1.1panPan2
RPS20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1297,488,481 - 7,489,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha297,801,137 - 7,802,503 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0297,562,721 - 7,564,084 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl297,402,178 - 7,564,085 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1297,576,107 - 7,577,470 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0297,708,970 - 7,710,336 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0297,985,835 - 7,987,201 (-)NCBIUU_Cfam_GSD_1.0
RPS20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1852,108,532 - 52,109,956 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl852,108,568 - 52,110,016 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603989,689,679 - 89,691,170 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248863,981,899 - 3,985,261 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248863,981,885 - 3,983,243 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPS20
21 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000043834   ⟹   ENSSSCP00000058493
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl475,762,209 - 75,769,955 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000074749   ⟹   ENSSSCP00000060134
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl475,762,209 - 75,763,272 (+)Ensembl
RefSeq Acc Id: NM_001129954   ⟹   NP_001123426
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1475,762,209 - 75,763,449 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001123426   ⟸   NM_001129954
- UniProtKB: A1XQU9 (UniProtKB/Swiss-Prot),   A0A8D0WT18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000060134   ⟸   ENSSSCT00000074749
RefSeq Acc Id: ENSSSCP00000058493   ⟸   ENSSSCT00000043834
Protein Domains
Small ribosomal subunit protein uS10


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040470 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005011503 UniProtKB/TrEMBL
  ENSSSCG00025055440 UniProtKB/TrEMBL
  ENSSSCG00030042603 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043834 ENTREZGENE
  ENSSSCT00000043834.3 UniProtKB/TrEMBL
  ENSSSCT00000074749.2 UniProtKB/TrEMBL
  ENSSSCT00005017941.1 UniProtKB/TrEMBL
  ENSSSCT00025075974.1 UniProtKB/TrEMBL
  ENSSSCT00030059358.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.600 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ribosomal_S10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S10_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S10_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S10_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S10_euk/arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:414395 UniProtKB/Swiss-Prot
NCBI Gene RPS20 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S20 UniProtKB/Swiss-Prot
  40S RIBOSOMAL PROTEIN S20 UniProtKB/TrEMBL
  PTHR11700 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS RIBOSOMALS10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Ribosomal_S10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54999 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1SWA8_PIG UniProtKB/TrEMBL
  A0A5G2Q7Q1_PIG UniProtKB/TrEMBL
  A0A8D0WT18 ENTREZGENE, UniProtKB/TrEMBL
  A1XQU9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A287BQP4 UniProtKB/TrEMBL