LOC100524011 (olfactory receptor 1J4-like) - Rat Genome Database

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Pathways
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Gene: LOC100524011 (olfactory receptor 1J4-like) Sus scrofa
Analyze
Symbol: LOC100524011
Name: olfactory receptor 1J4-like
RGD ID: 14033416
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11262,689,681 - 262,690,825 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21296,949,695 - 296,950,636 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100524011
333 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003122147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003122147   ⟹   XP_003122195
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11262,689,681 - 262,690,825 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003122195 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000068453
  ENSSSCP00000068453.1
  ENSSSCP00035032299.1
  ENSSSCP00055020237.1
  ENSSSCP00070001883.1
Reference Protein Sequences
RefSeq Acc Id: XP_003122195   ⟸   XM_003122147
- UniProtKB: A0A5G2QUE5 (UniProtKB/TrEMBL),   A0A4X1SHU2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000061539 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035058837 UniProtKB/TrEMBL
  ENSSSCG00055012960 UniProtKB/TrEMBL
  ENSSSCG00070001186 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000079451 ENTREZGENE
  ENSSSCT00000079451.1 UniProtKB/TrEMBL
  ENSSSCT00035078761.1 UniProtKB/TrEMBL
  ENSSSCT00055025486.1 UniProtKB/TrEMBL
  ENSSSCT00070002250.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report ssc:100524011 UniProtKB/TrEMBL
NCBI Gene LOC100524011 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A4X1SHU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QUE5 ENTREZGENE, UniProtKB/TrEMBL