UBN1 (ubinuclein 1) - Rat Genome Database

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Gene: UBN1 (ubinuclein 1) Sus scrofa
Analyze
Symbol: UBN1
Name: ubinuclein 1
RGD ID: 14032911
Description: INVOLVED IN nucleosome assembly (inferred); ASSOCIATED WITH Hydrops Fetalis (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN bicellular tight junction (inferred); centriolar satellite (inferred); nuclear body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubinuclein-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl337,512,313 - 37,555,203 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1337,512,306 - 37,555,255 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2338,518,208 - 38,536,586 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
UBN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl337,512,313 - 37,555,203 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1337,512,306 - 37,555,255 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2338,518,208 - 38,536,586 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,847,481 - 4,882,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,846,665 - 4,882,401 (+)EnsemblGRCh38hg38GRCh38
GRCh37164,897,482 - 4,932,402 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,837,913 - 4,872,364 (+)NCBINCBI36Build 36hg18NCBI36
Build 34164,842,216 - 4,872,364NCBI
Celera165,106,685 - 5,141,135 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef164,864,193 - 4,898,486 (+)NCBIHuRef
CHM1_1164,898,810 - 4,933,255 (+)NCBICHM1_1
T2T-CHM13v2.0164,876,971 - 4,911,890 (+)NCBIT2T-CHM13v2.0
Ubn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,867,921 - 4,904,153 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,867,921 - 4,904,153 (+)EnsemblGRCm39 Ensembl
GRCm38165,050,057 - 5,086,289 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,050,057 - 5,086,289 (+)EnsemblGRCm38mm10GRCm38
MGSCv37165,050,161 - 5,086,378 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,970,410 - 5,001,608 (+)NCBIMGSCv36mm8
Celera165,681,405 - 5,717,620 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.49NCBI
Ubn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,003,036 - 11,038,466 (-)NCBIGRCr8
mRatBN7.21010,496,576 - 10,532,010 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,496,576 - 10,532,010 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1015,204,646 - 15,239,996 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01014,693,466 - 14,728,816 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,362,719 - 10,398,102 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01010,690,224 - 10,725,655 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1010,690,224 - 10,725,655 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0109,457,239 - 9,492,668 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41010,612,480 - 10,647,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11010,612,474 - 10,647,858 (-)NCBI
Celera109,460,580 - 9,495,788 (-)NCBICelera
Cytogenetic Map10q12NCBI
Ubn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544212,627,530 - 12,654,159 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544212,627,530 - 12,654,159 (-)NCBIChiLan1.0ChiLan1.0
UBN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2185,375,842 - 5,410,621 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,166,465 - 9,200,785 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,771,623 - 3,806,575 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,936,864 - 4,970,992 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,942,191 - 4,970,986 (+)Ensemblpanpan1.1panPan2
UBN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1636,542,266 - 36,581,789 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl636,544,405 - 36,581,797 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha637,934,552 - 37,974,038 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0636,745,422 - 36,784,724 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl636,745,417 - 36,780,193 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1636,540,042 - 36,579,317 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,432,947 - 36,472,235 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0636,834,628 - 36,873,909 (-)NCBIUU_Cfam_GSD_1.0
Ubn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,950,527 - 106,980,674 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365304,795,968 - 4,826,137 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365304,795,974 - 4,826,217 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,518,369 - 4,554,687 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl54,525,081 - 4,552,465 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606826,103,022 - 26,140,180 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248242,693,403 - 2,720,305 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248242,693,270 - 2,720,305 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBN1
457 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 2 4 1 1 3
Low 6 2 3 1 2 22 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000008685   ⟹   ENSSSCP00000008461
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl337,512,314 - 37,555,185 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000103332   ⟹   ENSSSCP00000078914
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl337,512,313 - 37,555,203 (-)Ensembl
RefSeq Acc Id: XM_003124638   ⟹   XP_003124686
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1337,512,306 - 37,555,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005662154   ⟹   XP_005662211
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1337,512,306 - 37,555,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013995671   ⟹   XP_013851125
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1337,512,306 - 37,555,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086661   ⟹   XP_020942320
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1337,512,306 - 37,555,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086662   ⟹   XP_020942321
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1337,512,306 - 37,555,255 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020942321   ⟸   XM_021086662
- Peptide Label: isoform X5
- UniProtKB: A0A8W4FJ48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851125   ⟸   XM_013995671
- Peptide Label: isoform X3
- UniProtKB: A0A8D1LYK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005662211   ⟸   XM_005662154
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VQM9 (UniProtKB/TrEMBL),   A0A8W4FJ48 (UniProtKB/TrEMBL),   A0A8D0UBQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003124686   ⟸   XM_003124638
- Peptide Label: isoform X2
- UniProtKB: A0A4X1VLG2 (UniProtKB/TrEMBL),   A0A0B8RZ08 (UniProtKB/TrEMBL),   A0A8D1LYK8 (UniProtKB/TrEMBL),   A0A8D1DWM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942320   ⟸   XM_021086661
- Peptide Label: isoform X1
- UniProtKB: A0A8D0PXG7 (UniProtKB/TrEMBL),   A0A8D1LYK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000008461   ⟸   ENSSSCT00000008685
RefSeq Acc Id: ENSSSCP00000078914   ⟸   ENSSSCT00000103332
Protein Domains
Hpc2-related   Ubinuclein middle


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007924 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032447 UniProtKB/TrEMBL
  ENSSSCG00015072864 UniProtKB/TrEMBL
  ENSSSCG00025017766 UniProtKB/TrEMBL
  ENSSSCG00030014234 UniProtKB/TrEMBL
  ENSSSCG00035025085 UniProtKB/TrEMBL
  ENSSSCG00040024155 UniProtKB/TrEMBL
  ENSSSCG00045014883 UniProtKB/TrEMBL
  ENSSSCG00050028154 UniProtKB/TrEMBL
  ENSSSCG00055028225 UniProtKB/TrEMBL
  ENSSSCG00060077024 UniProtKB/TrEMBL
  ENSSSCG00065015082 UniProtKB/TrEMBL
  ENSSSCG00070026156 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008685 ENTREZGENE
  ENSSSCT00000008685.4 UniProtKB/TrEMBL
  ENSSSCT00000103332 ENTREZGENE
  ENSSSCT00000103332.1 UniProtKB/TrEMBL
  ENSSSCT00005052288.1 UniProtKB/TrEMBL
  ENSSSCT00005052327.1 UniProtKB/TrEMBL
  ENSSSCT00015097798.1 UniProtKB/TrEMBL
  ENSSSCT00015098070.1 UniProtKB/TrEMBL
  ENSSSCT00015098195.1 UniProtKB/TrEMBL
  ENSSSCT00015098581.1 UniProtKB/TrEMBL
  ENSSSCT00025024097.1 UniProtKB/TrEMBL
  ENSSSCT00030019564.1 UniProtKB/TrEMBL
  ENSSSCT00035033006.1 UniProtKB/TrEMBL
  ENSSSCT00040032335.1 UniProtKB/TrEMBL
  ENSSSCT00045025283.1 UniProtKB/TrEMBL
  ENSSSCT00050037856.1 UniProtKB/TrEMBL
  ENSSSCT00055055937.1 UniProtKB/TrEMBL
  ENSSSCT00060105909.1 UniProtKB/TrEMBL
  ENSSSCT00065020036.1 UniProtKB/TrEMBL
  ENSSSCT00070052407.1 UniProtKB/TrEMBL
  ENSSSCT00070052428.1 UniProtKB/TrEMBL
InterPro HRD UniProtKB/TrEMBL
  UBN_middle_dom UniProtKB/TrEMBL
KEGG Report ssc:100512403 UniProtKB/TrEMBL
NCBI Gene UBN1 ENTREZGENE
PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS UniProtKB/TrEMBL
  PTHR21669:SF12 UniProtKB/TrEMBL
Pfam HUN UniProtKB/TrEMBL
  UBN_AB UniProtKB/TrEMBL
UniProt A0A0B8RZ08 ENTREZGENE
  A0A4X1VLG2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VQM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PXG7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UBQ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DWM4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LYK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FJ48 ENTREZGENE, UniProtKB/TrEMBL
  F1RK94_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94663 ENTREZGENE