HOXA11 (homeobox A11) - Rat Genome Database

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Pathways
Gene: HOXA11 (homeobox A11) Sus scrofa
Analyze
Symbol: HOXA11
Name: homeobox A11
RGD ID: 14032841
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); sequence-specific double-stranded DNA binding (inferred); INVOLVED IN anterior/posterior pattern specification (ortholog); bone development (ortholog); branching involved in ureteric bud morphogenesis (ortholog); ASSOCIATED WITH Congenital Limb Deformities (ortholog); Contracture (ortholog); Endometrial Neoplasms (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); protein-containing complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein Hox-A11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,388,375 - 45,391,953 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,388,523 - 45,392,190 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,021,709 - 50,025,376 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:33738916  


Genomics

Comparative Map Data
HOXA11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,388,375 - 45,391,953 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,388,523 - 45,392,190 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,021,709 - 50,025,376 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXA11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38727,181,157 - 27,185,232 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl727,181,157 - 27,185,232 (-)EnsemblGRCh38hg38GRCh38
GRCh37727,220,776 - 27,224,851 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,187,301 - 27,191,360 (-)NCBINCBI36Build 36hg18NCBI36
Build 34726,994,368 - 26,998,070NCBI
Celera727,209,715 - 27,213,774 (-)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef727,101,338 - 27,105,401 (-)NCBIHuRef
CHM1_1727,220,497 - 27,224,560 (-)NCBICHM1_1
T2T-CHM13v2.0727,317,166 - 27,321,240 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2727,271,961 - 27,276,020 (-)NCBI
Hoxa11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,219,086 - 52,222,784 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl652,219,086 - 52,222,790 (-)EnsemblGRCm39 Ensembl
GRCm38652,242,105 - 52,245,810 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,242,106 - 52,245,810 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,192,105 - 52,195,766 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36652,171,689 - 52,175,350 (-)NCBIMGSCv36mm8
Celera652,763,744 - 52,767,403 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.4NCBI
Hoxa11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2481,342,527 - 81,346,189 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,342,528 - 81,346,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx486,564,339 - 86,567,995 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0482,339,730 - 82,343,386 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0480,766,832 - 80,770,490 (-)NCBIRnor_WKY
Rnor_6.0482,296,888 - 82,301,419 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,298,152 - 82,300,503 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,211,366 - 82,215,022 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04146,963,720 - 146,967,382 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,542,417 - 80,546,079NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera476,233,120 - 76,236,782 (-)NCBICelera
Cytogenetic Map4q24NCBI
Hoxa11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,877,055 - 28,879,465 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,875,780 - 28,879,643 (-)NCBIChiLan1.0ChiLan1.0
HOXA11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1780,336,618 - 80,339,066 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0727,826,003 - 27,829,757 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1727,426,602 - 27,429,092 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl727,424,759 - 27,429,103 (-)Ensemblpanpan1.1panPan2
HOXA11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11440,355,907 - 40,360,120 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1440,357,478 - 40,359,919 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,786,761 - 39,790,944 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01440,294,564 - 40,298,764 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1440,295,087 - 40,299,055 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11440,408,521 - 40,412,708 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01440,093,599 - 40,097,769 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01440,452,219 - 40,456,401 (-)NCBIUU_Cfam_GSD_1.0
Hoxa11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511884,597,557 - 84,601,354 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364783,809,288 - 3,813,014 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364783,809,288 - 3,813,014 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXA11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,180,232 - 31,187,709 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2131,183,682 - 31,186,010 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604273,546,525 - 73,553,107 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hoxa11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247393,418,723 - 3,423,950 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247393,420,501 - 3,424,151 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system renal system reproductive system
High
Medium
Low 4 2 2
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000018179   ⟹   ENSSSCP00000017688
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1845,388,375 - 45,391,953 (+)Ensembl
RefSeq Acc Id: XM_003134850   ⟹   XP_003134898
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11845,388,523 - 45,392,190 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003134898 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AHC94944 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003134898   ⟸   XM_003134850
- UniProtKB: F1SHT7 (UniProtKB/TrEMBL),   A0A8D0NE02 (UniProtKB/TrEMBL),   V9VHL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000017688   ⟸   ENSSSCT00000018179
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016698 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015033251 UniProtKB/TrEMBL
  ENSSSCG00065021203 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000017688 ENTREZGENE
  ENSSSCP00000017688.3 UniProtKB/TrEMBL
  ENSSSCP00015017419.1 UniProtKB/TrEMBL
  ENSSSCP00065011568.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018179 ENTREZGENE
  ENSSSCT00000018179.4 UniProtKB/TrEMBL
  ENSSSCT00015044031.1 UniProtKB/TrEMBL
  ENSSSCT00065028227.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro DUF3528 UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
KEGG Report ssc:100521236 UniProtKB/TrEMBL
NCBI Gene HOXA11 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HOX-A11 UniProtKB/TrEMBL
  HOMEOBOX PROTEIN HOX-A11-RELATED UniProtKB/TrEMBL
Pfam DUF3528 UniProtKB/TrEMBL
  Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8D0NE02 ENTREZGENE, UniProtKB/TrEMBL
  F1SHT7 ENTREZGENE, UniProtKB/TrEMBL
  V9VHL8 ENTREZGENE
UniProt Secondary V9VHL8 UniProtKB/TrEMBL
VGNC ID VGNC:88935 ENTREZGENE