NMRK1 (nicotinamide riboside kinase 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: NMRK1 (nicotinamide riboside kinase 1) Sus scrofa
Analyze
Symbol: NMRK1
Name: nicotinamide riboside kinase 1
RGD ID: 14032220
Description: ENCODES a protein that exhibits kinase activity (inferred); PARTICIPATES IN niacin metabolic pathway; nicotinamide adenine dinucleotide biosynthesis, the salvage pathway; INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1228,113,327 - 228,141,890 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11228,113,323 - 228,141,890 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,013,001 - 255,040,116 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NMRK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1228,113,327 - 228,141,890 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11228,113,323 - 228,141,890 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,013,001 - 255,040,116 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NMRK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38975,060,577 - 75,088,155 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl975,060,573 - 75,088,217 (-)EnsemblGRCh38hg38GRCh38
GRCh37977,675,493 - 77,703,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36976,865,936 - 76,892,918 (-)NCBINCBI36Build 36hg18NCBI36
Build 34974,905,669 - 74,932,652NCBI
Celera948,253,604 - 48,280,619 (-)NCBICelera
Cytogenetic Map9q21.13NCBI
HuRef947,503,001 - 47,530,017 (-)NCBIHuRef
CHM1_1977,822,558 - 77,849,575 (-)NCBICHM1_1
T2T-CHM13v2.0987,217,117 - 87,244,685 (-)NCBIT2T-CHM13v2.0
Nmrk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391918,609,380 - 18,629,555 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1918,609,314 - 18,629,792 (+)EnsemblGRCm39 Ensembl
GRCm381918,632,016 - 18,652,428 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1918,631,950 - 18,652,428 (+)EnsemblGRCm38mm10GRCm38
MGSCv371918,706,506 - 18,726,681 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361918,699,035 - 18,719,210 (+)NCBIMGSCv36mm8
Celera1919,318,140 - 19,337,534 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1913.17NCBI
Nmrk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,475,975 - 225,503,414 (+)NCBIGRCr8
mRatBN7.21216,049,350 - 216,076,792 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1216,049,437 - 216,076,791 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1224,383,014 - 224,410,366 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01231,319,558 - 231,346,910 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01224,137,541 - 224,164,895 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01234,721,992 - 234,749,452 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1234,721,974 - 234,749,447 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01241,821,770 - 241,849,122 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,230,110 - 222,257,462 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1213,348,622 - 213,375,985 (+)NCBICelera
Cytogenetic Map1q51NCBI
Nmrk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555123,994,486 - 4,013,227 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555123,990,706 - 4,043,334 (+)NCBIChiLan1.0ChiLan1.0
NMRK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21174,230,354 - 74,257,585 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1974,235,676 - 74,263,460 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0949,746,075 - 49,773,245 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1973,917,674 - 73,945,304 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl973,917,674 - 73,945,304 (-)Ensemblpanpan1.1panPan2
NMRK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1183,140,816 - 83,163,292 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl183,140,554 - 83,162,374 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha183,605,205 - 83,627,573 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0183,590,778 - 83,613,235 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl183,591,182 - 83,615,907 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1183,342,733 - 83,365,088 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0183,060,870 - 83,083,239 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0183,821,297 - 83,843,869 (+)NCBIUU_Cfam_GSD_1.0
Nmrk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947130,329,474 - 130,359,835 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650310,815,017 - 10,838,566 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650310,813,986 - 10,843,537 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NMRK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11286,112,583 - 86,140,457 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1286,112,271 - 86,140,449 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603874,556,464 - 74,584,391 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nmrk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248112,670,520 - 2,682,133 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248112,670,268 - 2,686,302 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NMRK1
667 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000005807   ⟹   ENSSSCP00000005663
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1228,103,750 - 228,141,723 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000046413   ⟹   ENSSSCP00000039327
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1228,113,324 - 228,141,761 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000052696   ⟹   ENSSSCP00000046369
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1228,113,327 - 228,141,890 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000053174   ⟹   ENSSSCP00000044430
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1228,113,327 - 228,141,890 (-)Ensembl
RefSeq Acc Id: XM_003121961   ⟹   XP_003122009
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11228,113,323 - 228,141,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005652700   ⟹   XP_005652757
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11228,113,335 - 228,141,880 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003122009   ⟸   XM_003121961
- UniProtKB: A0A8D0X5S4 (UniProtKB/TrEMBL),   A0A287AKL1 (UniProtKB/TrEMBL),   A0A8D1CQC1 (UniProtKB/TrEMBL),   A0A480JZY4 (UniProtKB/TrEMBL),   A0A8D0JQX4 (UniProtKB/TrEMBL),   A0A8D1EEJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005652757   ⟸   XM_005652700
- UniProtKB: A0A8D0X5S4 (UniProtKB/TrEMBL),   A0A287AKL1 (UniProtKB/TrEMBL),   A0A8D1CQC1 (UniProtKB/TrEMBL),   A0A480JZY4 (UniProtKB/TrEMBL),   A0A8D0JQX4 (UniProtKB/TrEMBL),   A0A8D1EEJ3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000005663   ⟸   ENSSSCT00000005807
Ensembl Acc Id: ENSSSCP00000046369   ⟸   ENSSSCT00000052696
Ensembl Acc Id: ENSSSCP00000039327   ⟸   ENSSSCT00000046413
Ensembl Acc Id: ENSSSCP00000044430   ⟸   ENSSSCT00000053174


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005272 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015032601 UniProtKB/TrEMBL
  ENSSSCG00025033684 UniProtKB/TrEMBL
  ENSSSCG00030047860 UniProtKB/TrEMBL
  ENSSSCG00035024239 UniProtKB/TrEMBL
  ENSSSCG00040037755 UniProtKB/TrEMBL
  ENSSSCG00045028956 UniProtKB/TrEMBL
  ENSSSCG00050076946 UniProtKB/TrEMBL
  ENSSSCG00055025574 UniProtKB/TrEMBL
  ENSSSCG00060015456 UniProtKB/TrEMBL
  ENSSSCG00065074231 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052696.3 UniProtKB/TrEMBL
  ENSSSCT00000053174 ENTREZGENE
  ENSSSCT00000053174.3 UniProtKB/TrEMBL
  ENSSSCT00015043118.1 UniProtKB/TrEMBL
  ENSSSCT00025045850.1 UniProtKB/TrEMBL
  ENSSSCT00025045905.1 UniProtKB/TrEMBL
  ENSSSCT00025045969.1 UniProtKB/TrEMBL
  ENSSSCT00025046054.1 UniProtKB/TrEMBL
  ENSSSCT00030066817.1 UniProtKB/TrEMBL
  ENSSSCT00030066840.1 UniProtKB/TrEMBL
  ENSSSCT00030066855.1 UniProtKB/TrEMBL
  ENSSSCT00035031844.1 UniProtKB/TrEMBL
  ENSSSCT00035031851.1 UniProtKB/TrEMBL
  ENSSSCT00035031855.1 UniProtKB/TrEMBL
  ENSSSCT00035031859.1 UniProtKB/TrEMBL
  ENSSSCT00035031863.1 UniProtKB/TrEMBL
  ENSSSCT00040050502.1 UniProtKB/TrEMBL
  ENSSSCT00040050612.1 UniProtKB/TrEMBL
  ENSSSCT00040050683.1 UniProtKB/TrEMBL
  ENSSSCT00040050761.1 UniProtKB/TrEMBL
  ENSSSCT00040050860.1 UniProtKB/TrEMBL
  ENSSSCT00045049391.1 UniProtKB/TrEMBL
  ENSSSCT00045049487.1 UniProtKB/TrEMBL
  ENSSSCT00045049611.1 UniProtKB/TrEMBL
  ENSSSCT00045049704.1 UniProtKB/TrEMBL
  ENSSSCT00050105808.1 UniProtKB/TrEMBL
  ENSSSCT00050105810.1 UniProtKB/TrEMBL
  ENSSSCT00050105813.1 UniProtKB/TrEMBL
  ENSSSCT00050105817.1 UniProtKB/TrEMBL
  ENSSSCT00050105822.1 UniProtKB/TrEMBL
  ENSSSCT00055050523.1 UniProtKB/TrEMBL
  ENSSSCT00055050582.1 UniProtKB/TrEMBL
  ENSSSCT00055050649.1 UniProtKB/TrEMBL
  ENSSSCT00055050705.1 UniProtKB/TrEMBL
  ENSSSCT00060020574.1 UniProtKB/TrEMBL
  ENSSSCT00060020588.1 UniProtKB/TrEMBL
  ENSSSCT00065102227.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
KEGG Report ssc:100518171 UniProtKB/TrEMBL
NCBI Gene NMRK1 ENTREZGENE
PANTHER URIDINE KINASE UniProtKB/TrEMBL
Pfam AAA_18 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287AKL1 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AQN5_PIG UniProtKB/TrEMBL
  A0A480JZY4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JPD7_PIG UniProtKB/TrEMBL
  A0A8D0JQX4 ENTREZGENE
  A0A8D0X5S4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Z4J8_PIG UniProtKB/TrEMBL
  A0A8D0Z9M0_PIG UniProtKB/TrEMBL
  A0A8D0ZAU0_PIG UniProtKB/TrEMBL
  A0A8D0ZBD4_PIG UniProtKB/TrEMBL
  A0A8D1CQC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EEJ3 ENTREZGENE
  A0A8D1IGV8_PIG UniProtKB/TrEMBL
  A0A8D1P6C8_PIG UniProtKB/TrEMBL
  A0A8D1RRE3_PIG UniProtKB/TrEMBL
  A0A8D1S4R9_PIG UniProtKB/TrEMBL
  A0A8D1TRD1_PIG UniProtKB/TrEMBL
UniProt Secondary A0A8D0JQX4 UniProtKB/TrEMBL
  A0A8D1EEJ3 UniProtKB/TrEMBL
VGNC ID VGNC:90800 ENTREZGENE