TMEM63B (transmembrane protein 63B) - Rat Genome Database

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Gene: TMEM63B (transmembrane protein 63B) Sus scrofa
Analyze
Symbol: TMEM63B
Name: transmembrane protein 63B
RGD ID: 14032073
Description: ENCODES a protein that exhibits mechanosensitive monoatomic cation channel activity (ortholog); INVOLVED IN monoatomic cation transmembrane transport (inferred); monoatomic ion transmembrane transport (inferred); sensory perception of sound (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); genetic disease (ortholog); FOUND IN alveolar lamellar body membrane (ortholog); early endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CSC1-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl739,138,431 - 39,165,077 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1739,137,684 - 39,165,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,954,529 - 44,981,984 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMEM63B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl739,138,431 - 39,165,077 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1739,137,684 - 39,165,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,954,529 - 44,981,984 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM63B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38644,126,633 - 44,155,519 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl644,126,914 - 44,155,519 (+)EnsemblGRCh38hg38GRCh38
GRCh37644,094,651 - 44,123,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36644,203,354 - 44,231,234 (+)NCBINCBI36Build 36hg18NCBI36
Celera645,648,517 - 45,676,397 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,823,622 - 43,844,580 (+)NCBIHuRef
CHM1_1644,099,550 - 44,127,430 (+)NCBICHM1_1
T2T-CHM13v2.0643,959,874 - 43,988,974 (+)NCBIT2T-CHM13v2.0
Tmem63b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391745,971,102 - 45,997,212 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1745,971,097 - 45,997,831 (-)EnsemblGRCm39 Ensembl
GRCm381745,660,172 - 45,686,343 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1745,660,171 - 45,686,905 (-)EnsemblGRCm38mm10GRCm38
MGSCv371745,797,126 - 45,823,167 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,123,758 - 45,149,719 (-)NCBIMGSCv36mm8
Celera1749,090,654 - 49,116,656 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.59NCBI
Tmem63b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,810,753 - 22,838,163 (+)NCBIGRCr8
mRatBN7.2915,313,867 - 15,340,722 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl915,320,432 - 15,340,720 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0917,698,697 - 17,725,479 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,705,212 - 17,725,378 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,587,156 - 16,613,885 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,912,750 - 10,938,218 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,910,808 - 10,935,527 (+)NCBI
Celera913,059,592 - 13,084,540 (+)NCBICelera
Cytogenetic Map9q12NCBI
Tmem63b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,769,352 - 9,791,136 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,769,352 - 9,789,517 (+)NCBIChiLan1.0ChiLan1.0
TMEM63B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,631,914 - 58,660,577 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1654,502,064 - 54,530,670 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,724,259 - 43,752,309 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1645,008,187 - 45,036,764 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl645,009,276 - 45,036,764 (+)Ensemblpanpan1.1panPan2
TMEM63B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,550,096 - 12,575,508 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,550,976 - 12,632,205 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,576,613 - 12,601,784 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01213,032,616 - 13,057,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1213,033,385 - 13,057,768 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,558,236 - 12,583,435 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,645,937 - 12,671,101 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,739,927 - 12,765,068 (+)NCBIUU_Cfam_GSD_1.0
Tmem63b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494648,031,372 - 48,049,835 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647615,910,459 - 15,934,169 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647615,910,186 - 15,928,570 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM63B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,009,378 - 28,039,047 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,009,118 - 28,030,855 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604444,183,496 - 44,212,464 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem63b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475415,688,248 - 15,703,105 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475415,688,304 - 15,708,227 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM63B
604 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000036360   ⟹   ENSSSCP00000029617
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl739,138,431 - 39,165,077 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000038739   ⟹   ENSSSCP00000050697
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl739,138,447 - 39,215,736 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039005   ⟹   ENSSSCP00000044206
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl739,138,431 - 39,165,077 (+)Ensembl
RefSeq Acc Id: XM_001929553   ⟹   XP_001929588
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1739,138,420 - 39,165,093 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005666056   ⟹   XP_005666113
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1739,137,684 - 39,165,093 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013977979   ⟹   XP_013833433
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1739,138,429 - 39,165,093 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098785   ⟹   XP_020954444
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1739,141,988 - 39,165,093 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098786   ⟹   XP_020954445
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1739,138,347 - 39,165,092 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098787   ⟹   XP_020954446
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1739,138,429 - 39,165,089 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005666113   ⟸   XM_005666056
- Peptide Label: isoform X1
- UniProtKB: A0A8D2A5R9 (UniProtKB/TrEMBL),   A0A8D1B680 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954445   ⟸   XM_021098786
- Peptide Label: isoform X2
- UniProtKB: A0A8D1B6A8 (UniProtKB/TrEMBL),   F1RQV6 (UniProtKB/TrEMBL),   A0A287B2N0 (UniProtKB/TrEMBL),   K7GP08 (UniProtKB/TrEMBL),   A0A287AJX9 (UniProtKB/TrEMBL),   A0A8D1DIL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001929588   ⟸   XM_001929553
- Peptide Label: isoform X1
- UniProtKB: A0A8D2A5R9 (UniProtKB/TrEMBL),   A0A8D1B680 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013833433   ⟸   XM_013977979
- Peptide Label: isoform X1
- UniProtKB: A0A8D2A5R9 (UniProtKB/TrEMBL),   A0A8D1B680 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954446   ⟸   XM_021098787
- Peptide Label: isoform X2
- UniProtKB: A0A8D1B6A8 (UniProtKB/TrEMBL),   F1RQV6 (UniProtKB/TrEMBL),   A0A287B2N0 (UniProtKB/TrEMBL),   K7GP08 (UniProtKB/TrEMBL),   A0A287AJX9 (UniProtKB/TrEMBL),   A0A8D1DIL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954444   ⟸   XM_021098785
- Peptide Label: isoform X1
- UniProtKB: A0A8D2A5R9 (UniProtKB/TrEMBL),   A0A8D1B680 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000044206   ⟸   ENSSSCT00000039005
RefSeq Acc Id: ENSSSCP00000029617   ⟸   ENSSSCT00000036360
RefSeq Acc Id: ENSSSCP00000050697   ⟸   ENSSSCT00000038739

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001697 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025042490 UniProtKB/TrEMBL
  ENSSSCG00030068592 UniProtKB/TrEMBL
  ENSSSCG00035076248 UniProtKB/TrEMBL
  ENSSSCG00040014147 UniProtKB/TrEMBL
  ENSSSCG00045024701 UniProtKB/TrEMBL
  ENSSSCG00050001537 UniProtKB/TrEMBL
  ENSSSCG00055026035 UniProtKB/TrEMBL
  ENSSSCG00060026038 UniProtKB/TrEMBL
  ENSSSCG00065072567 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000036360 ENTREZGENE
  ENSSSCT00000036360.4 UniProtKB/TrEMBL
  ENSSSCT00000039005.3 UniProtKB/TrEMBL
  ENSSSCT00025057841.1 UniProtKB/TrEMBL
  ENSSSCT00025058184.1 UniProtKB/TrEMBL
  ENSSSCT00030095933.1 UniProtKB/TrEMBL
  ENSSSCT00035103689.1 UniProtKB/TrEMBL
  ENSSSCT00035103745.1 UniProtKB/TrEMBL
  ENSSSCT00035103772.1 UniProtKB/TrEMBL
  ENSSSCT00035103801.1 UniProtKB/TrEMBL
  ENSSSCT00040018870.1 UniProtKB/TrEMBL
  ENSSSCT00040018881.1 UniProtKB/TrEMBL
  ENSSSCT00040018903.1 UniProtKB/TrEMBL
  ENSSSCT00045042605.1 UniProtKB/TrEMBL
  ENSSSCT00050001996.1 UniProtKB/TrEMBL
  ENSSSCT00050002064.1 UniProtKB/TrEMBL
  ENSSSCT00055051408.1 UniProtKB/TrEMBL
  ENSSSCT00055051520.1 UniProtKB/TrEMBL
  ENSSSCT00055051650.1 UniProtKB/TrEMBL
  ENSSSCT00055051981.1 UniProtKB/TrEMBL
  ENSSSCT00055052163.1 UniProtKB/TrEMBL
  ENSSSCT00060035280.1 UniProtKB/TrEMBL
  ENSSSCT00060035301.1 UniProtKB/TrEMBL
  ENSSSCT00065099743.1 UniProtKB/TrEMBL
  ENSSSCT00065099808.1 UniProtKB/TrEMBL
  ENSSSCT00065099966.1 UniProtKB/TrEMBL
InterPro Csc1-like UniProtKB/TrEMBL
  Csc1_N UniProtKB/TrEMBL
  PHM7_cyt UniProtKB/TrEMBL
  RSN1_7TM UniProtKB/TrEMBL
KEGG Report ssc:100151872 UniProtKB/TrEMBL
NCBI Gene TMEM63B ENTREZGENE
PANTHER CSC1-LIKE PROTEIN 2 UniProtKB/TrEMBL
  PTHR13018 UniProtKB/TrEMBL
Pfam PHM7_cyt UniProtKB/TrEMBL
  RSN1_7TM UniProtKB/TrEMBL
  RSN1_TM UniProtKB/TrEMBL
UniProt A0A287AJX9 ENTREZGENE, UniProtKB/TrEMBL
  A0A287B2N0 ENTREZGENE
  A0A8D0Y5R5_PIG UniProtKB/TrEMBL
  A0A8D1B680 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1B6A8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DIL9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2A5R9 ENTREZGENE, UniProtKB/TrEMBL
  F1RQV6 ENTREZGENE
  K7GP08 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287B2N0 UniProtKB/TrEMBL
  F1RQV6 UniProtKB/TrEMBL
VGNC ID VGNC:94197 ENTREZGENE