GGCX (gamma-glutamyl carboxylase) - Rat Genome Database

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Gene: GGCX (gamma-glutamyl carboxylase) Sus scrofa
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Symbol: GGCX
Name: gamma-glutamyl carboxylase
RGD ID: 14031902
Description: ENCODES a protein that exhibits gamma-glutamyl carboxylase activity (ortholog); vitamin binding (ortholog); INVOLVED IN lung growth (ortholog); peptidyl-glutamic acid carboxylation (ortholog); response to dexamethasone (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH blood coagulation disease (ortholog); Coagulation Protein Disorders (ortholog); combined deficiency of vitamin K-dependent clotting factors 1 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vitamin K-dependent gamma-carboxylase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,202,429 - 59,218,145 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,202,363 - 59,219,807 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,263,519 - 62,276,716 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GGCX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,202,429 - 59,218,145 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,202,363 - 59,219,807 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,263,519 - 62,276,716 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GGCX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,544,720 - 85,561,493 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl285,544,720 - 85,561,532 (-)EnsemblGRCh38hg38GRCh38
GRCh37285,771,843 - 85,788,616 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,629,714 - 85,642,090 (-)NCBINCBI36Build 36hg18NCBI36
Build 34285,687,861 - 85,700,237NCBI
Celera285,604,381 - 85,616,845 (-)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,669,320 - 85,686,004 (-)NCBIHuRef
CHM1_1285,701,785 - 85,718,463 (-)NCBICHM1_1
T2T-CHM13v2.0285,546,779 - 85,563,552 (-)NCBIT2T-CHM13v2.0
Ggcx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,391,262 - 72,407,696 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,391,291 - 72,407,695 (+)EnsemblGRCm39 Ensembl
GRCm38672,414,279 - 72,433,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,414,308 - 72,430,712 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,364,327 - 72,380,701 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,343,842 - 72,360,216 (+)NCBIMGSCv36mm8
Celera674,509,409 - 74,525,757 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
Ggcx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84106,027,918 - 106,043,653 (+)NCBIGRCr8
mRatBN7.24104,469,737 - 104,485,631 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,469,765 - 104,487,063 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4109,849,413 - 109,865,120 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04105,624,526 - 105,640,233 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04104,237,548 - 104,253,262 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04100,277,345 - 100,293,097 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,277,391 - 100,293,250 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04165,047,672 - 165,063,604 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,719,323 - 105,735,037 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14105,963,803 - 105,979,517 (+)NCBI
Celera493,622,596 - 93,638,331 (+)NCBICelera
Cytogenetic Map4q32NCBI
Ggcx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,936,772 - 1,952,635 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,926,924 - 1,952,635 (+)NCBIChiLan1.0ChiLan1.0
GGCX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,819,956 - 40,833,578 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,822,718 - 40,836,051 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A85,599,227 - 85,612,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A87,152,108 - 87,164,567 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,152,111 - 87,164,567 (-)Ensemblpanpan1.1panPan2
GGCX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,512,293 - 39,525,251 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,512,387 - 39,529,121 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,183,664 - 39,196,637 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01740,258,976 - 40,271,953 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1740,259,006 - 40,275,813 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11739,388,607 - 39,401,574 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,460,505 - 39,473,477 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01739,860,352 - 39,873,319 (+)NCBIUU_Cfam_GSD_1.0
Ggcx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,147,378 - 79,158,577 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,699,750 - 1,709,087 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,696,264 - 1,709,087 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GGCX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,593,202 - 21,605,800 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1421,593,088 - 21,604,885 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604590,859,363 - 90,872,520 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ggcx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474917,579,661 - 17,593,150 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474917,579,690 - 17,595,111 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GGCX
361 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 1 3 3 3 2 3
Low 6 3 2 2 20 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000031020   ⟹   ENSSSCP00000021229
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl359,202,429 - 59,218,145 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000079244   ⟹   ENSSSCP00000072334
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl359,202,450 - 59,217,250 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000080468   ⟹   ENSSSCP00000060390
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl359,202,430 - 59,217,239 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089421   ⟹   ENSSSCP00000063000
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl359,202,377 - 59,221,132 (+)Ensembl
RefSeq Acc Id: XM_003354744   ⟹   XP_003354792
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1359,202,363 - 59,219,807 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003354792   ⟸   XM_003354744
- UniProtKB: A0A4X1W535 (UniProtKB/TrEMBL),   A0A5G2QEB8 (UniProtKB/TrEMBL),   A0A8D0JD31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000063000   ⟸   ENSSSCT00000089421
RefSeq Acc Id: ENSSSCP00000021229   ⟸   ENSSSCT00000031020
RefSeq Acc Id: ENSSSCP00000072334   ⟸   ENSSSCT00000079244
RefSeq Acc Id: ENSSSCP00000060390   ⟸   ENSSSCT00000080468
Protein Domains
HTTM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027381 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005023071 UniProtKB/TrEMBL
  ENSSSCG00025063868 UniProtKB/TrEMBL
  ENSSSCG00055022515 UniProtKB/TrEMBL
  ENSSSCG00065044938 UniProtKB/TrEMBL
  ENSSSCG00070029049 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000031020 ENTREZGENE
  ENSSSCT00000031020.4 UniProtKB/TrEMBL
  ENSSSCT00005037020.1 UniProtKB/TrEMBL
  ENSSSCT00025088018.1 UniProtKB/TrEMBL
  ENSSSCT00025088562.1 UniProtKB/TrEMBL
  ENSSSCT00055044906.1 UniProtKB/TrEMBL
  ENSSSCT00065061488.1 UniProtKB/TrEMBL
  ENSSSCT00065061516.1 UniProtKB/TrEMBL
  ENSSSCT00070058269.1 UniProtKB/TrEMBL
  ENSSSCT00070058270.1 UniProtKB/TrEMBL
  ENSSSCT00070058272.1 UniProtKB/TrEMBL
InterPro HTTM UniProtKB/TrEMBL
  VKG_COase UniProtKB/TrEMBL
KEGG Report ssc:100620337 UniProtKB/TrEMBL
NCBI Gene GGCX ENTREZGENE
PANTHER PTHR12639 UniProtKB/TrEMBL
  VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE UniProtKB/TrEMBL
Pfam VKG_Carbox UniProtKB/TrEMBL
SMART HTTM UniProtKB/TrEMBL
UniProt A0A4X1W065_PIG UniProtKB/TrEMBL
  A0A4X1W535 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W687_PIG UniProtKB/TrEMBL
  A0A5G2QEB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JD31 ENTREZGENE, UniProtKB/TrEMBL
  I3LB10_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88435 ENTREZGENE