EPO (erythropoietin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: EPO (erythropoietin) Sus scrofa
Analyze
Symbol: EPO
Name: erythropoietin
RGD ID: 14031352
Description: ENCODES a protein that exhibits erythropoietin receptor binding (ortholog); INVOLVED IN acute-phase response (ortholog); apoptotic process (ortholog); embryo implantation (ortholog); PARTICIPATES IN erythropoietin signaling pathway; hypoxia inducible factor pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Subdural Hematoma (ortholog); Acute-Phase Reaction (ortholog); FOUND IN cell body (ortholog); extracellular space (ortholog); INTERACTS WITH cisplatin
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,620,508 - 8,622,936 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,620,508 - 8,622,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.238,014,859 - 8,017,287 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acute kidney failure  (ISO)
Acute Subdural Hematoma  (ISO)
Acute-Phase Reaction  (ISO)
AIDS Dementia Complex  (ISO)
Albuminuria  (ISO)
Alzheimer's disease  (ISO)
amyotrophic lateral sclerosis  (ISO)
Anastomotic Leak  (ISO)
anemia  (ISO)
beta thalassemia  (ISO)
Brain Hypoxia  (ISO)
Brain Hypoxia-Ischemia  (ISO)
Brain Injuries  (ISO)
breast cancer  (ISO)
calcinosis  (ISO)
Cardiogenic Shock  (ISO)
cardiomyopathy  (ISO)
central nervous system disease  (ISO)
cholangiocarcinoma  (ISO)
cognitive disorder  (ISO)
congenital diaphragmatic hernia  (ISO)
congestive heart failure  (ISO)
coronary artery disease  (ISO)
diabetic angiopathy  (ISO)
Diabetic Nephropathies  (ISO)
diabetic neuropathy  (ISO)
diabetic retinopathy  (ISO)
Diamond-Blackfan Anemia-Like  (ISO)
end stage renal disease  (ISO)
Endotoxemia  (ISO)
Experimental Autoimmune Encephalomyelitis  (ISO)
Experimental Autoimmune Neuritis  (ISO)
Experimental Diabetes Mellitus  (ISO)
Experimental Mammary Neoplasms  (ISO)
Experimental Sarcoma  (ISO)
Experimental Seizures  (ISO)
familial erythrocytosis 5  (ISO)
Fatigue  (ISO)
Fetal Distress  (ISO)
gastric ulcer  (ISO)
glaucoma  (ISO)
heart disease  (ISO)
hemolytic anemia  (ISO)
hemolytic-uremic syndrome  (ISO)
Hemorrhagic Shock  (ISO)
hepatocellular carcinoma  (ISO)
high grade glioma  (ISO)
hypertension  (ISO)
hypoglycemia  (ISO)
Inflammation  (ISO)
kidney disease  (ISO)
kidney failure  (ISO)
Kidney Reperfusion Injury  (ISO)
Knee Osteoarthritis  (ISO)
limb ischemia  (ISO)
Liver Reperfusion Injury  (ISO)
macular retinal edema  (ISO)
melanoma  (ISO)
Micronuclei, Chromosome-Defective  (ISO)
middle cerebral artery infarction  (ISO)
myelodysplastic syndrome  (ISO)
myocardial infarction  (ISO)
Necrosis  (ISO)
Neoplasm Invasiveness  (ISO)
Neoplasm Metastasis  (ISO)
nephrotic syndrome  (ISO)
Nerve Degeneration  (ISO)
neurodegenerative disease  (ISO)
pancytopenia  (ISO)
Paraneoplastic Syndromes  (ISO)
Parkinson's disease  (ISO)
Penetrating Wounds  (ISO)
placental insufficiency  (ISO)
pleomorphic xanthoastrocytoma  (ISO)
Poisoning  (ISO)
polyneuropathy  (ISO)
porphyria  (ISO)
Pregnancy Complications  (ISO)
pulmonary embolism  (ISO)
pulmonary hypertension  (ISO)
retinal degeneration  (ISO)
retinal detachment  (ISO)
retinopathy of prematurity  (ISO)
severe combined immunodeficiency  (ISO)
Spinal Cord Compression  (ISO)
Spinal Cord Injuries  (ISO)
status epilepticus  (ISO)
Subarachnoid Hemorrhage  (ISO)
thrombocytopenia  (ISO)
thrombosis  (ISO)
Thyroid Neoplasms  (ISO)
transient cerebral ischemia  (ISO)
Tubulointerstitial Fibrosis  (ISO)
type 2 diabetes mellitus  (ISO)
uremia  (ISO)
vascular dementia  (ISO)
vascular disease  (ISO)
Venous Thrombosis  (ISO)
Ventricular Fibrillation  (ISO)
ventricular septal defect  (ISO)
Ventricular Tachycardia  (ISO)
Weight Loss  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
cisplatin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
acute-phase response  (ISO)
apoptotic process  (IEA,ISO)
cell surface receptor signaling pathway via STAT  (IEA)
cellular hyperosmotic response  (IEA)
embryo implantation  (IEA,ISO)
erythrocyte differentiation  (IEA,ISO,ISS)
erythrocyte maturation  (IEA)
erythropoietin-mediated signaling pathway  (IBA,IEA,ISS)
hemoglobin biosynthetic process  (IEA,ISO)
myeloid cell apoptotic process  (IEA,ISO)
negative regulation of apoptotic process  (IEA)
negative regulation of calcium ion transport into cytosol  (IEA)
negative regulation of cation channel activity  (ISO)
negative regulation of cellular process  (ISO)
negative regulation of erythrocyte apoptotic process  (IEA)
negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress  (IEA)
negative regulation of myeloid cell apoptotic process  (IEA,ISO)
negative regulation of transcription by RNA polymerase II  (IEA)
peptidyl-serine phosphorylation  (ISO)
positive regulation of activated T cell proliferation  (ISO)
positive regulation of cell population proliferation  (IBA,IEA,ISO)
positive regulation of DNA-templated transcription  (IEA)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of neuron differentiation  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of protein kinase activity  (ISO)
positive regulation of Ras protein signal transduction  (IBA,IEA)
regulation of transcription by RNA polymerase II  (IEA,ISO)
response to axon injury  (ISO)
response to dexamethasone  (ISO)
response to electrical stimulus  (ISO)
response to estrogen  (ISO)
response to hyperoxia  (ISO)
response to hypoxia  (IEA,ISO)
response to interleukin-1  (ISO)
response to lipopolysaccharide  (ISO)
response to nutrient  (ISO)
response to salt stress  (ISO)
response to testosterone  (ISO)
response to vitamin A  (ISO)
signal transduction  (IEA)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:8364201   PMID:11311851   PMID:19767525   PMID:19908127   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EPO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,620,508 - 8,622,936 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,620,508 - 8,622,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.238,014,859 - 8,017,287 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,720,468 - 100,723,700 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,720,468 - 100,723,700 (+)EnsemblGRCh38hg38GRCh38
GRCh377100,318,091 - 100,321,323 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367100,156,359 - 100,159,259 (+)NCBINCBI36Build 36hg18NCBI36
Build 34799,963,073 - 99,965,972NCBI
Celera795,048,997 - 95,051,893 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,949,230 - 94,952,126 (+)NCBIHuRef
CHM1_17100,248,723 - 100,251,623 (+)NCBICHM1_1
T2T-CHM13v2.07101,960,533 - 101,963,765 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,678,028 - 99,680,928 (+)NCBI
Epo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,481,282 - 137,484,078 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5137,481,282 - 137,531,504 (-)EnsemblGRCm39 Ensembl
GRCm385137,483,020 - 137,485,816 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,483,020 - 137,533,242 (-)EnsemblGRCm38mm10GRCm38
MGSCv375137,924,248 - 137,927,044 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365137,712,873 - 137,715,533 (-)NCBIMGSCv36mm8
Celera5134,466,358 - 134,469,154 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.5NCBI
Epo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81224,841,285 - 24,844,725 (+)NCBIGRCr8
mRatBN7.21219,204,258 - 19,207,948 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,204,508 - 19,207,946 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1220,360,727 - 20,364,164 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01220,973,647 - 20,977,085 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,037,993 - 20,041,431 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,274,828 - 22,278,268 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,274,828 - 22,278,266 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,291,481 - 24,294,921 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41219,551,768 - 19,555,208 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11219,541,291 - 19,544,730 (-)NCBI
Celera1221,009,353 - 21,012,793 (+)NCBICelera
Cytogenetic Map12q12NCBI
Epo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573203,441 - 206,355 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955573203,875 - 206,078 (-)NCBIChiLan1.0ChiLan1.0
EPO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,631,018 - 118,635,765 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,895,649 - 166,900,396 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,747,671 - 92,750,886 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17106,148,062 - 106,150,974 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,148,062 - 106,150,974 (+)Ensemblpanpan1.1panPan2
EPO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.168,994,211 - 8,995,954 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl68,994,211 - 8,996,144 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,698,441 - 10,700,425 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.068,928,384 - 8,930,368 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl68,928,625 - 8,931,073 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.168,780,936 - 8,782,920 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.068,759,117 - 8,761,101 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.068,940,837 - 8,942,821 (-)NCBIUU_Cfam_GSD_1.0
Epo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,290,130 - 133,295,627 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543743,537 - 745,343 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543742,722 - 745,332 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,487,222 - 12,491,986 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,489,766 - 12,491,908 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,816,537 - 3,820,180 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in EPO
35 total Variants

Expression

RNA-SEQ Expression

ectoderm
mesenchyme
nervous system
renal system
4 1 4 1

Sequence


Ensembl Acc Id: ENSSSCT00000008413   ⟹   ENSSSCP00000008194
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl38,620,508 - 8,622,936 (+)Ensembl
RefSeq Acc Id: NM_214134   ⟹   NP_999299
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.138,620,508 - 8,622,936 (+)NCBI
Sequence:
RefSeq Acc Id: NP_999299   ⟸   NM_214134
- Peptide Label: precursor
- UniProtKB: Q9MYM8 (UniProtKB/Swiss-Prot),   P49157 (UniProtKB/Swiss-Prot),   A0A8D1NUQ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000008194   ⟸   ENSSSCT00000008413


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007673 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00015053699 UniProtKB/TrEMBL
  ENSSSCG00025073331 UniProtKB/Swiss-Prot
  ENSSSCG00030009733 UniProtKB/Swiss-Prot
  ENSSSCG00035072206 UniProtKB/Swiss-Prot
  ENSSSCG00040074856 UniProtKB/Swiss-Prot
  ENSSSCG00045018517 UniProtKB/Swiss-Prot
  ENSSSCG00050073142 UniProtKB/TrEMBL
  ENSSSCG00055025537 UniProtKB/Swiss-Prot
  ENSSSCG00060040861 UniProtKB/TrEMBL
  ENSSSCG00065014655 UniProtKB/Swiss-Prot
  ENSSSCG00070016325 UniProtKB/Swiss-Prot
  ENSSSCG00090013860 UniProtKB/Swiss-Prot
  ENSSSCG00105016411 UniProtKB/Swiss-Prot
  ENSSSCG00110029922 UniProtKB/Swiss-Prot
  ENSSSCG00115012918 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000008413 ENTREZGENE
  ENSSSCT00000008413.2 UniProtKB/Swiss-Prot
  ENSSSCT00015071786.1 UniProtKB/TrEMBL
  ENSSSCT00025100933.1 UniProtKB/Swiss-Prot
  ENSSSCT00030013330.1 UniProtKB/Swiss-Prot
  ENSSSCT00035097698.1 UniProtKB/Swiss-Prot
  ENSSSCT00040103619.1 UniProtKB/Swiss-Prot
  ENSSSCT00045031528.1 UniProtKB/Swiss-Prot
  ENSSSCT00050099926.1 UniProtKB/TrEMBL
  ENSSSCT00055050476.1 UniProtKB/Swiss-Prot
  ENSSSCT00060055378.1 UniProtKB/TrEMBL
  ENSSSCT00065019511.1 UniProtKB/Swiss-Prot
  ENSSSCT00070032133.1 UniProtKB/Swiss-Prot
  ENSSSCT00090024313 UniProtKB/Swiss-Prot
  ENSSSCT00105031630 UniProtKB/Swiss-Prot
  ENSSSCT00110057172 UniProtKB/Swiss-Prot
  ENSSSCT00115022315 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EPO/TPO_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EPO_TPO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Erythroptn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397249 UniProtKB/Swiss-Prot
NCBI Gene EPO ENTREZGENE
PANTHER ERYTHROPOIETIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EPO_TPO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF EPO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS ERYTHROPTN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EPO_TPO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8D1NUQ5 ENTREZGENE, UniProtKB/TrEMBL
  EPO_PIG UniProtKB/Swiss-Prot, ENTREZGENE
  Q9MYM8 ENTREZGENE
UniProt Secondary Q9MYM8 UniProtKB/Swiss-Prot
VGNC ID VGNC:87744 ENTREZGENE