MTTP (microsomal triglyceride transfer protein) - Rat Genome Database

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Gene: MTTP (microsomal triglyceride transfer protein) Sus scrofa
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Symbol: MTTP
Name: microsomal triglyceride transfer protein
RGD ID: 14031227
Description: ENCODES a protein that exhibits apolipoprotein binding (ortholog); ceramide 1-phosphate transfer activity (ortholog); cholesterol transfer activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); establishment of localization in cell (ortholog); lipid metabolic process (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome 1 (ortholog); abetalipoproteinemia (ortholog); Abetalipoproteinemia Neuropathy (ortholog); FOUND IN basolateral plasma membrane (ortholog); brush border membrane (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: microsomal triglyceride transfer protein large subunit; MTP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8120,820,656 - 120,879,388 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18120,820,660 - 120,871,468 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28130,036,478 - 130,087,445 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:12177174   PMID:19496770   PMID:21127258   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MTTP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8120,820,656 - 120,879,388 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18120,820,660 - 120,871,468 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28130,036,478 - 130,087,445 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTTP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38499,564,130 - 99,623,997 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl499,564,081 - 99,623,997 (+)EnsemblGRCh38hg38GRCh38
GRCh374100,485,287 - 100,545,154 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364100,704,263 - 100,764,177 (+)NCBINCBI36Build 36hg18NCBI36
Build 344100,853,158 - 100,901,804NCBI
Celera497,782,659 - 97,842,577 (+)NCBICelera
Cytogenetic Map4q23NCBI
HuRef496,223,283 - 96,283,485 (+)NCBIHuRef
CHM1_14100,461,713 - 100,521,565 (+)NCBICHM1_1
T2T-CHM13v2.04102,878,899 - 102,939,426 (+)NCBIT2T-CHM13v2.0
Mttp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393137,795,616 - 137,849,179 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3137,795,615 - 137,850,729 (-)EnsemblGRCm39 Ensembl
GRCm383138,089,855 - 138,143,418 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,089,854 - 138,144,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv373137,752,819 - 137,806,352 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363138,028,273 - 138,068,711 (-)NCBIMGSCv36mm8
Celera3144,502,913 - 144,554,347 (-)NCBICelera
Cytogenetic Map3G3NCBI
cM Map364.06NCBI
Mttp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,286,501 - 229,327,650 (-)NCBIGRCr8
mRatBN7.22226,613,090 - 226,654,239 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2226,613,090 - 226,654,239 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2234,352,193 - 234,393,386 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02232,251,937 - 232,293,127 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02227,116,603 - 227,157,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02243,366,181 - 243,407,608 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2243,366,181 - 243,407,608 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02261,907,825 - 261,948,693 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42235,613,710 - 235,654,848 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12235,600,461 - 235,641,567 (-)NCBI
Celera2218,769,332 - 218,810,411 (-)NCBICelera
Cytogenetic Map2q43NCBI
Mttp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554967,963,262 - 8,009,838 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554967,963,323 - 8,022,393 (-)NCBIChiLan1.0ChiLan1.0
MTTP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2397,646,193 - 97,705,596 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1497,929,920 - 97,989,327 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0491,987,756 - 92,047,127 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14102,648,793 - 102,708,107 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4102,648,793 - 102,708,107 (+)Ensemblpanpan1.1panPan2
MTTP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13221,582,368 - 21,626,806 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3221,570,801 - 21,628,624 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3220,269,932 - 20,326,464 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03221,791,316 - 21,847,942 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3221,803,303 - 21,847,792 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13221,768,037 - 21,824,593 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03221,555,521 - 21,612,308 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03218,256,944 - 18,313,535 (-)NCBIUU_Cfam_GSD_1.0
Mttp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530119,994,708 - 20,057,294 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365203,338,881 - 3,381,627 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365203,337,726 - 3,417,818 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTTP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1747,706,591 - 47,765,154 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl747,717,089 - 47,765,149 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603726,182,236 - 26,230,115 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mttp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248307,464,686 - 7,506,129 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248307,463,671 - 7,505,607 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MTTP
1820 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000010052   ⟹   ENSSSCP00000009789
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8120,820,659 - 120,879,388 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000075781   ⟹   ENSSSCP00000069871
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8120,820,676 - 120,871,498 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000084936   ⟹   ENSSSCP00000071497
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8120,820,656 - 120,862,458 (-)Ensembl
RefSeq Acc Id: NM_214185   ⟹   NP_999350
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18120,820,660 - 120,871,468 (-)NCBI
Sequence:
RefSeq Acc Id: NP_999350   ⟸   NM_214185
- Peptide Label: precursor
- UniProtKB: Q865F1 (UniProtKB/Swiss-Prot),   A0A480UDD3 (UniProtKB/TrEMBL),   A0A4X1UHL6 (UniProtKB/TrEMBL),   A0A8D0Q9R1 (UniProtKB/TrEMBL),   A0A8D1FZC4 (UniProtKB/TrEMBL),   F1S0Z3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000009789   ⟸   ENSSSCT00000010052
Ensembl Acc Id: ENSSSCP00000069871   ⟸   ENSSSCT00000075781
Ensembl Acc Id: ENSSSCP00000071497   ⟸   ENSSSCT00000084936
Protein Domains
Vitellogenin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009179 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015076519 UniProtKB/TrEMBL
  ENSSSCG00030029783 UniProtKB/TrEMBL
  ENSSSCG00040069717 UniProtKB/TrEMBL
  ENSSSCG00045030426 UniProtKB/Swiss-Prot
  ENSSSCG00050019122 UniProtKB/TrEMBL
  ENSSSCG00055016309 UniProtKB/TrEMBL
  ENSSSCG00070017040 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010052 ENTREZGENE
  ENSSSCT00000010052.5 UniProtKB/TrEMBL
  ENSSSCT00000075781.1 UniProtKB/TrEMBL
  ENSSSCT00000084936.2 UniProtKB/TrEMBL
  ENSSSCT00015103265.1 UniProtKB/TrEMBL
  ENSSSCT00030041416.1 UniProtKB/TrEMBL
  ENSSSCT00040095556.1 UniProtKB/TrEMBL
  ENSSSCT00040095737.1 UniProtKB/TrEMBL
  ENSSSCT00040095921.1 UniProtKB/TrEMBL
  ENSSSCT00045051910.1 UniProtKB/Swiss-Prot
  ENSSSCT00050025846.1 UniProtKB/TrEMBL
  ENSSSCT00055032175.1 UniProtKB/TrEMBL
  ENSSSCT00055032294.1 UniProtKB/TrEMBL
  ENSSSCT00055032393.1 UniProtKB/TrEMBL
  ENSSSCT00070033616.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Lipid_transp_b-sht_shell UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipid_transpt_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipovitellin_superhlx_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MTP_lip_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MTTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vitellinogen_b-sht_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397381 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene MTTP ENTREZGENE
PANTHER MICROSOMAL TRIGLYCERIDE TRANSFER PROTEIN LARGE SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13024 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MTP_lip_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vitellogenin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE VITELLOGENIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LPD_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48431 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A480UDD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UHL6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QY78_PIG UniProtKB/TrEMBL
  A0A5G2R2S8_PIG UniProtKB/TrEMBL
  A0A8D0Q9R1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FZC4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1KK22_PIG UniProtKB/TrEMBL
  A0A8D1KKJ9_PIG UniProtKB/TrEMBL
  A0A8D1QT22_PIG UniProtKB/TrEMBL
  A0A8D1QTG9_PIG UniProtKB/TrEMBL
  F1S0Z3 ENTREZGENE, UniProtKB/TrEMBL
  MTP_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:98942 ENTREZGENE