NDST3 (N-deacetylase and N-sulfotransferase 3) - Rat Genome Database

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Gene: NDST3 (N-deacetylase and N-sulfotransferase 3) Sus scrofa
Analyze
Symbol: NDST3
Name: N-deacetylase and N-sulfotransferase 3
RGD ID: 14030540
Description: ENCODES a protein that exhibits sulfotransferase activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (inferred); heparin biosynthetic process (inferred); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN Golgi membrane (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3; N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8105,221,348 - 105,370,019 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18105,221,344 - 105,370,067 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28112,936,356 - 113,071,738 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
NDST3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8105,221,348 - 105,370,019 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18105,221,344 - 105,370,067 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28112,936,356 - 113,071,738 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDST3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4118,033,618 - 118,258,634 (+)EnsemblGRCh38hg38GRCh38
GRCh384118,033,322 - 118,258,945 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374118,954,477 - 119,179,789 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364119,174,948 - 119,396,471 (+)NCBINCBI36hg18NCBI36
Build 344119,313,102 - 119,534,619NCBI
Celera4116,246,834 - 116,470,914 (+)NCBI
Cytogenetic Map4q26NCBI
HuRef4114,690,968 - 114,915,210 (+)NCBIHuRef
CHM1_14118,931,941 - 119,156,021 (+)NCBICHM1_1
Ndst3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393123,319,815 - 123,484,822 (-)NCBIGRCm39mm39
GRCm39 Ensembl3123,319,815 - 123,484,502 (-)Ensembl
GRCm383123,526,166 - 123,691,174 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3123,526,166 - 123,690,853 (-)EnsemblGRCm38mm10GRCm38
MGSCv373123,229,084 - 123,375,310 (-)NCBIGRCm37mm9NCBIm37
MGSCv363123,518,188 - 123,664,414 (-)NCBImm8
Celera3129,957,784 - 130,108,254 (-)NCBICelera
Cytogenetic Map3G1NCBI
Ndst3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22211,702,728 - 211,868,159 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2211,704,898 - 211,854,584 (-)Ensembl
Rnor_6.02227,736,491 - 227,903,657 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2227,738,650 - 227,890,077 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02247,093,243 - 247,257,182 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42220,275,268 - 220,427,691 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12220,238,148 - 220,390,759 (-)NCBI
Celera2204,116,633 - 204,266,078 (-)NCBICelera
Cytogenetic Map2q42NCBI
Ndst3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542821,671,358 - 21,853,483 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542821,671,432 - 21,853,492 (-)NCBIChiLan1.0ChiLan1.0
NDST3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14121,030,502 - 121,258,996 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4121,031,051 - 121,259,594 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04110,476,743 - 110,705,030 (+)NCBIMhudiblu_PPA_v0panPan3
NDST3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13237,309,829 - 37,487,977 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3237,309,718 - 37,485,796 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha324,585,127 - 4,762,882 (-)NCBI
ROS_Cfam_1.03237,538,387 - 37,709,936 (+)NCBI
UMICH_Zoey_3.13237,561,964 - 37,733,280 (+)NCBI
UNSW_CanFamBas_1.03237,284,768 - 37,456,322 (+)NCBI
UU_Cfam_GSD_1.0322,347,600 - 2,519,125 (-)NCBI
LOC101971473
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053013,330,427 - 3,486,663 (-)NCBI
SpeTri2.0NW_004936932259,847 - 414,472 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDST3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1765,792,906 - 66,004,628 (+)NCBI
Vero_WHO_p1.0NW_02366603744,625,143 - 44,836,737 (+)NCBI
Ndst3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248675,129,556 - 5,318,520 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 7 1
Low 2 4 1 5 16 1
Below cutoff 6 1 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000009982   ⟹   ENSSSCP00000009724
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8105,221,348 - 105,370,019 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000037931   ⟹   ENSSSCP00000040149
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8105,223,830 - 105,367,610 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000084918   ⟹   ENSSSCP00000072642
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8105,290,052 - 105,370,019 (-)Ensembl
RefSeq Acc Id: XM_005666900   ⟹   XP_005666957
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18105,221,344 - 105,366,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101656   ⟹   XP_020957315
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18105,221,344 - 105,370,067 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005666957 (Get FASTA)   NCBI Sequence Viewer  
  XP_020957315 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020957315   ⟸   XM_021101656
- Sequence:
RefSeq Acc Id: XP_005666957   ⟸   XM_005666900
- UniProtKB: F1S152 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000009724   ⟸   ENSSSCT00000009982
RefSeq Acc Id: ENSSSCP00000072642   ⟸   ENSSSCT00000084918
RefSeq Acc Id: ENSSSCP00000040149   ⟸   ENSSSCT00000037931
Protein Domains
HSNSD   Sulfotransfer_1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009115 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000009724 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000040149 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000072642 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009982 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000037931 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000084918 UniProtKB/TrEMBL
InterPro Heparan_SO4_deacetylase UniProtKB/TrEMBL
  NST/OST UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
KEGG Report ssc:100525060 UniProtKB/TrEMBL
NCBI Gene NDST3 ENTREZGENE
PANTHER PTHR10605 UniProtKB/TrEMBL
Pfam HSNSD UniProtKB/TrEMBL
  Sulfotransfer_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287A882_PIG UniProtKB/TrEMBL
  A0A5G2RKJ3_PIG UniProtKB/TrEMBL
  F1S152 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90635 ENTREZGENE