MEAF6 (MYST/Esa1 associated factor 6) - Rat Genome Database

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Gene: MEAF6 (MYST/Esa1 associated factor 6) Sus scrofa
Analyze
Symbol: MEAF6
Name: MYST/Esa1 associated factor 6
RGD ID: 14029029
Description: ENCODES a protein that exhibits histone H3K14 acetyltransferase activity (ortholog); histone H4K12 acetyltransferase activity (ortholog); histone H4K5 acetyltransferase activity (ortholog); INVOLVED IN chromatin organization (inferred); chromatin remodeling (inferred); maintenance of RNA location (inferred); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); FOUND IN histone acetyltransferase complex (ortholog); MOZ/MORF histone acetyltransferase complex (ortholog); NuA4 histone acetyltransferase complex (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: chromatin modification-related protein MEAF6; MEAF1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,559,101 - 93,589,001 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,559,259 - 93,589,030 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
MEAF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,559,101 - 93,589,001 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,559,259 - 93,589,030 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MEAF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38137,489,993 - 37,514,766 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl137,489,993 - 37,514,766 (-)EnsemblGRCh38hg38GRCh38
GRCh37137,955,594 - 37,980,367 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36137,730,763 - 37,752,951 (-)NCBINCBI36Build 36hg18NCBI36
Celera136,236,125 - 36,258,295 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,072,605 - 36,097,202 (-)NCBIHuRef
CHM1_1138,071,688 - 38,096,548 (-)NCBICHM1_1
T2T-CHM13v2.0137,354,747 - 37,379,496 (-)NCBIT2T-CHM13v2.0
Meaf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,978,883 - 125,007,031 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,978,927 - 125,007,031 (+)EnsemblGRCm39 Ensembl
GRCm384125,085,113 - 125,113,238 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4125,085,134 - 125,113,238 (+)EnsemblGRCm38mm10GRCm38
MGSCv374124,762,391 - 124,787,133 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,587,451 - 124,612,193 (+)NCBIMGSCv36mm8
Celera4123,406,366 - 123,431,186 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map458.03NCBI
Meaf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,628,281 - 142,653,076 (+)NCBIGRCr8
mRatBN7.25137,344,681 - 137,369,703 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5137,344,380 - 137,370,014 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5140,048,944 - 140,072,306 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,818,963 - 141,842,301 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,826,128 - 141,849,475 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05143,081,298 - 143,103,225 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5143,081,326 - 143,103,222 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,848,709 - 146,870,861 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,426,475 - 144,450,475 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15144,436,454 - 144,459,629 (+)NCBI
Celera5135,862,902 - 135,885,006 (+)NCBICelera
Cytogenetic Map5q36NCBI
Meaf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,325,227 - 15,347,175 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,325,227 - 15,347,175 (-)NCBIChiLan1.0ChiLan1.0
MEAF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,325,902 - 189,350,817 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11188,454,789 - 188,479,688 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,761,402 - 36,783,746 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,111,528 - 38,159,602 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,111,937 - 38,133,360 (-)Ensemblpanpan1.1panPan2
MEAF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,944,059 - 4,971,573 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,943,430 - 4,964,391 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,187,757 - 5,218,548 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0155,074,993 - 5,104,658 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl155,075,032 - 5,100,830 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,934,164 - 4,964,891 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0155,000,529 - 5,031,309 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0155,017,228 - 5,047,063 (+)NCBIUU_Cfam_GSD_1.0
Meaf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505853,907,506 - 53,930,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647419,729,465 - 19,754,261 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647419,732,278 - 19,754,228 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEAF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12095,359,469 - 95,380,547 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2095,359,515 - 95,379,259 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,435,443 - 21,457,163 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Meaf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,244,987 - 20,266,473 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,241,824 - 20,266,499 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MEAF6
169 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 1 17 2
Low 10 4 4 2 6 2 3 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000023185   ⟹   ENSSSCP00000027584
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl693,559,101 - 93,589,001 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000039039   ⟹   ENSSSCP00000054361
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl693,559,997 - 93,589,000 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000047074   ⟹   ENSSSCP00000043354
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl693,558,899 - 93,589,005 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049490   ⟹   ENSSSCP00000039125
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl693,558,899 - 93,589,014 (-)Ensembl
RefSeq Acc Id: NM_001243456   ⟹   NP_001230385
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1693,559,993 - 93,588,982 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093429   ⟹   XP_020949088
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1693,559,259 - 93,589,030 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093430   ⟹   XP_020949089
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1693,559,259 - 93,587,644 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002344408
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1693,559,261 - 93,589,030 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002344409
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1693,559,259 - 93,589,030 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002344410
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1693,559,261 - 93,589,030 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001230385 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949088 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949089 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000027584
  ENSSSCP00000027584.4
  ENSSSCP00000054361.1
  ENSSSCP00005022758.1
  ENSSSCP00005022790.1
  ENSSSCP00005022835.1
  ENSSSCP00015002161.1
  ENSSSCP00015002166.1
  ENSSSCP00015002171.1
  ENSSSCP00015002176.1
  ENSSSCP00015002178.1
  ENSSSCP00025015712.1
  ENSSSCP00025015756.1
  ENSSSCP00025015811.1
  ENSSSCP00025015869.1
  ENSSSCP00025015910.1
  ENSSSCP00030024878.1
  ENSSSCP00030024890.1
  ENSSSCP00030024913.1
  ENSSSCP00030024922.1
  ENSSSCP00030024931.1
  ENSSSCP00035009728.1
  ENSSSCP00035009731.1
  ENSSSCP00035009734.1
  ENSSSCP00035009738.1
  ENSSSCP00035009741.1
  ENSSSCP00040007300.1
  ENSSSCP00040007310.1
  ENSSSCP00040007323.1
  ENSSSCP00040007332.1
  ENSSSCP00040007340.1
  ENSSSCP00045004670.1
  ENSSSCP00045004675.1
  ENSSSCP00045004679.1
  ENSSSCP00045004684.1
  ENSSSCP00045004690.1
  ENSSSCP00050037079.1
  ENSSSCP00050037082.1
  ENSSSCP00050037085.1
  ENSSSCP00050037089.1
  ENSSSCP00050037090.1
  ENSSSCP00055004294.1
  ENSSSCP00055004305.1
  ENSSSCP00055004317.1
  ENSSSCP00055004323.1
  ENSSSCP00055004333.1
  ENSSSCP00060045296.1
  ENSSSCP00060045310.1
  ENSSSCP00060045341.1
  ENSSSCP00060045373.1
  ENSSSCP00060045398.1
  ENSSSCP00060045420.1
  ENSSSCP00065000454.1
  ENSSSCP00065000457.1
  ENSSSCP00065000459.1
  ENSSSCP00065000460.1
  ENSSSCP00065000463.1
  ENSSSCP00070046144.1
  ENSSSCP00070046152.1
  ENSSSCP00070046173.1
  ENSSSCP00070046180.1
RefSeq Acc Id: XP_020949088   ⟸   XM_021093429
- Peptide Label: isoform X1
- UniProtKB: A0A8D1CNT3 (UniProtKB/TrEMBL),   I3LTY5 (UniProtKB/TrEMBL),   A0A480QB40 (UniProtKB/TrEMBL),   A0A4X1VWA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949089   ⟸   XM_021093430
- Peptide Label: isoform X2
- UniProtKB: A0A8D0J419 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230385   ⟸   NM_001243456
- UniProtKB: A0A481C504 (UniProtKB/TrEMBL),   A0A8D1WVQ8 (UniProtKB/TrEMBL),   A0A8D0J419 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000054361   ⟸   ENSSSCT00000039039
RefSeq Acc Id: ENSSSCP00000039125   ⟸   ENSSSCT00000049490
RefSeq Acc Id: ENSSSCP00000043354   ⟸   ENSSSCT00000047074
RefSeq Acc Id: ENSSSCP00000027584   ⟸   ENSSSCT00000023185
Protein Domains
FHA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034611 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005023512 UniProtKB/TrEMBL
  ENSSSCG00015004076 UniProtKB/TrEMBL
  ENSSSCG00025027661 UniProtKB/TrEMBL
  ENSSSCG00030039094 UniProtKB/TrEMBL
  ENSSSCG00035019806 UniProtKB/TrEMBL
  ENSSSCG00040013426 UniProtKB/TrEMBL
  ENSSSCG00045004105 UniProtKB/TrEMBL
  ENSSSCG00050063472 UniProtKB/TrEMBL
  ENSSSCG00055002895 UniProtKB/TrEMBL
  ENSSSCG00060075659 UniProtKB/TrEMBL
  ENSSSCG00065001258 UniProtKB/TrEMBL
  ENSSSCG00070027105 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023185 ENTREZGENE
  ENSSSCT00000023185.4 UniProtKB/TrEMBL
  ENSSSCT00000039039 ENTREZGENE
  ENSSSCT00000039039.2 UniProtKB/TrEMBL
  ENSSSCT00005037201.1 UniProtKB/TrEMBL
  ENSSSCT00005037260.1 UniProtKB/TrEMBL
  ENSSSCT00005037329.1 UniProtKB/TrEMBL
  ENSSSCT00015005439.1 UniProtKB/TrEMBL
  ENSSSCT00015005457.1 UniProtKB/TrEMBL
  ENSSSCT00015005469.1 UniProtKB/TrEMBL
  ENSSSCT00015005487.1 UniProtKB/TrEMBL
  ENSSSCT00015005495.1 UniProtKB/TrEMBL
  ENSSSCT00025037475.1 UniProtKB/TrEMBL
  ENSSSCT00025037562.1 UniProtKB/TrEMBL
  ENSSSCT00025037659.1 UniProtKB/TrEMBL
  ENSSSCT00025037761.1 UniProtKB/TrEMBL
  ENSSSCT00025037832.1 UniProtKB/TrEMBL
  ENSSSCT00030054444.1 UniProtKB/TrEMBL
  ENSSSCT00030054475.1 UniProtKB/TrEMBL
  ENSSSCT00030054529.1 UniProtKB/TrEMBL
  ENSSSCT00030054560.1 UniProtKB/TrEMBL
  ENSSSCT00030054588.1 UniProtKB/TrEMBL
  ENSSSCT00035025679.1 UniProtKB/TrEMBL
  ENSSSCT00035025683.1 UniProtKB/TrEMBL
  ENSSSCT00035025689.1 UniProtKB/TrEMBL
  ENSSSCT00035025696.1 UniProtKB/TrEMBL
  ENSSSCT00035025701.1 UniProtKB/TrEMBL
  ENSSSCT00040017831.1 UniProtKB/TrEMBL
  ENSSSCT00040017852.1 UniProtKB/TrEMBL
  ENSSSCT00040017881.1 UniProtKB/TrEMBL
  ENSSSCT00040017903.1 UniProtKB/TrEMBL
  ENSSSCT00040017922.1 UniProtKB/TrEMBL
  ENSSSCT00045006835.1 UniProtKB/TrEMBL
  ENSSSCT00045006840.1 UniProtKB/TrEMBL
  ENSSSCT00045006845.1 UniProtKB/TrEMBL
  ENSSSCT00045006854.1 UniProtKB/TrEMBL
  ENSSSCT00045006860.1 UniProtKB/TrEMBL
  ENSSSCT00050086417.1 UniProtKB/TrEMBL
  ENSSSCT00050086425.1 UniProtKB/TrEMBL
  ENSSSCT00050086430.1 UniProtKB/TrEMBL
  ENSSSCT00050086435.1 UniProtKB/TrEMBL
  ENSSSCT00050086442.1 UniProtKB/TrEMBL
  ENSSSCT00055005547.1 UniProtKB/TrEMBL
  ENSSSCT00055005560.1 UniProtKB/TrEMBL
  ENSSSCT00055005572.1 UniProtKB/TrEMBL
  ENSSSCT00055005579.1 UniProtKB/TrEMBL
  ENSSSCT00055005590.1 UniProtKB/TrEMBL
  ENSSSCT00060103619.1 UniProtKB/TrEMBL
  ENSSSCT00060103634.1 UniProtKB/TrEMBL
  ENSSSCT00060103679.1 UniProtKB/TrEMBL
  ENSSSCT00060103753.1 UniProtKB/TrEMBL
  ENSSSCT00060103808.1 UniProtKB/TrEMBL
  ENSSSCT00060103854.1 UniProtKB/TrEMBL
  ENSSSCT00065001519.1 UniProtKB/TrEMBL
  ENSSSCT00065001523.1 UniProtKB/TrEMBL
  ENSSSCT00065001528.1 UniProtKB/TrEMBL
  ENSSSCT00065001531.1 UniProtKB/TrEMBL
  ENSSSCT00065001534.1 UniProtKB/TrEMBL
  ENSSSCT00070054408.1 UniProtKB/TrEMBL
  ENSSSCT00070054417.1 UniProtKB/TrEMBL
  ENSSSCT00070054440.1 UniProtKB/TrEMBL
  ENSSSCT00070054447.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
InterPro Eaf6 UniProtKB/TrEMBL
  FHA_dom UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100627675 UniProtKB/TrEMBL
NCBI Gene MEAF6 ENTREZGENE
PANTHER CHROMATIN MODIFICATION-RELATED PROTEIN MEAF6 UniProtKB/TrEMBL
  NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 UniProtKB/TrEMBL
  PTHR13476 UniProtKB/TrEMBL
  SMAD NUCLEAR-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  NuA4 UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
UniProt A0A287BCU9_PIG UniProtKB/TrEMBL
  A0A480QB40 ENTREZGENE, UniProtKB/TrEMBL
  A0A481C504 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VVT1_PIG UniProtKB/TrEMBL
  A0A4X1VWA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VWX7_PIG UniProtKB/TrEMBL
  A0A8D0J419 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JE12_PIG UniProtKB/TrEMBL
  A0A8D0LN78_PIG UniProtKB/TrEMBL
  A0A8D1CNT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WVQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1X4R1_PIG UniProtKB/TrEMBL
  I3LTY5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90098 ENTREZGENE