SLC1A4 (solute carrier family 1 member 4) - Rat Genome Database

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Pathways
Gene: SLC1A4 (solute carrier family 1 member 4) Sus scrofa
Analyze
Symbol: SLC1A4
Name: solute carrier family 1 member 4
RGD ID: 14028982
Description: ENCODES a protein that exhibits L-cystine transmembrane transporter activity (ortholog); L-serine transmembrane transporter activity (ortholog); INVOLVED IN L-cystine transport (ortholog); L-serine transport (ortholog); PARTICIPATES IN argininosuccinic aciduria pathway; carbamoyl phosphate synthetase I deficiency pathway; citrullinemia pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ASCT1; neutral amino acid transporter A; neutral amino acid transporter ASCT1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl376,938,107 - 76,970,508 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1376,938,102 - 76,970,519 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2380,747,982 - 80,754,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:15377602   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC1A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl376,938,107 - 76,970,508 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1376,938,102 - 76,970,519 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2380,747,982 - 80,754,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC1A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38264,988,479 - 65,023,865 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl264,988,477 - 65,023,865 (+)Ensemblhg38GRCh38
GRCh37265,215,613 - 65,250,999 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36265,070,098 - 65,104,503 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34265,128,244 - 65,162,648NCBI
Celera265,061,957 - 65,097,385 (+)NCBICelera
Cytogenetic Map2p14NCBI
HuRef264,949,345 - 64,984,802 (+)NCBIHuRef
CHM1_1265,146,566 - 65,181,989 (+)NCBICHM1_1
T2T-CHM13v2.0264,998,100 - 65,033,490 (+)NCBIT2T-CHM13v2.0
Slc1a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391120,252,180 - 20,282,713 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1120,252,180 - 20,282,713 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381120,302,180 - 20,332,713 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,302,180 - 20,332,713 (-)Ensemblmm10GRCm38
MGSCv371120,202,183 - 20,232,716 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361120,202,208 - 20,232,674 (-)NCBIMGSCv36mm8
Celera1122,451,521 - 22,482,559 (-)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1112.97NCBI
Slc1a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81498,718,646 - 98,761,672 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1498,730,450 - 98,761,790 (-)EnsemblGRCr8
mRatBN7.21494,530,801 - 94,560,190 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1494,529,084 - 94,560,418 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1498,877,394 - 98,907,056 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014100,117,664 - 100,147,323 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01496,585,031 - 96,614,695 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014104,582,884 - 104,612,417 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14104,581,190 - 104,612,597 (-)Ensemblrn6Rnor6.0
Rnor_5.014104,317,800 - 104,345,829 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414101,123,740 - 101,153,790 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1493,550,109 - 93,578,743 (-)NCBICelera
RGSC_v3.114101,142,950 - 101,173,001 (-)NCBI
Cytogenetic Map14q22NCBI
Slc1a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542419,474,082 - 19,499,592 (-)Ensembl
ChiLan1.0NW_00495542419,474,082 - 19,499,592 (-)NCBIChiLan1.0ChiLan1.0
SLC1A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21261,377,645 - 61,412,341 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A61,380,650 - 61,416,291 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A65,051,025 - 65,086,917 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A66,177,835 - 66,212,249 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A66,176,925 - 66,209,615 (+)EnsemblpanPan2panpan1.1
SLC1A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11064,482,840 - 64,508,288 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1064,483,060 - 64,505,747 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1064,369,739 - 64,394,932 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01065,493,157 - 65,518,318 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1065,492,613 - 65,518,315 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11065,172,083 - 65,197,216 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01065,480,918 - 65,503,851 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01065,774,013 - 65,799,174 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc1a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629218,780,757 - 18,810,279 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364919,760,952 - 9,790,536 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364919,761,002 - 9,790,535 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC1A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11441,999,216 - 42,032,326 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1441,999,064 - 42,032,288 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604569,848,255 - 69,881,833 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc1a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247628,532,063 - 8,558,994 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247628,532,550 - 8,558,912 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC1A4
921 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000029680   ⟹   ENSSSCP00000021080
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl376,938,109 - 76,970,508 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000071206   ⟹   ENSSSCP00000066586
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl376,938,107 - 76,951,537 (-)Ensembl
RefSeq Acc Id: XM_013996100   ⟹   XP_013851554
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1376,938,102 - 76,966,440 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021087450   ⟹   XP_020943109
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1376,938,102 - 76,970,519 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020943109   ⟸   XM_021087450
- Peptide Label: isoform X1
- UniProtKB: A0A4X1WAU5 (UniProtKB/TrEMBL),   I3LAL2 (UniProtKB/TrEMBL),   A0A8D0WNL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851554   ⟸   XM_013996100
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSSSCP00000021080   ⟸   ENSSSCT00000029680
Ensembl Acc Id: ENSSSCP00000066586   ⟸   ENSSSCT00000071206


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028282 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015010201 UniProtKB/TrEMBL
  ENSSSCG00025035199 UniProtKB/TrEMBL
  ENSSSCG00030037704 UniProtKB/TrEMBL
  ENSSSCG00035078820 UniProtKB/TrEMBL
  ENSSSCG00040073606 UniProtKB/TrEMBL
  ENSSSCG00045013155 UniProtKB/TrEMBL
  ENSSSCG00050066926 UniProtKB/TrEMBL
  ENSSSCG00055011554 UniProtKB/TrEMBL
  ENSSSCG00060050372 UniProtKB/TrEMBL
  ENSSSCG00065024828 UniProtKB/TrEMBL
  ENSSSCG00070030047 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029680 ENTREZGENE
  ENSSSCT00000029680.4 UniProtKB/TrEMBL
  ENSSSCT00000071206.2 UniProtKB/TrEMBL
  ENSSSCT00015013391.1 UniProtKB/TrEMBL
  ENSSSCT00015013453.1 UniProtKB/TrEMBL
  ENSSSCT00025048033.1 UniProtKB/TrEMBL
  ENSSSCT00025048050.1 UniProtKB/TrEMBL
  ENSSSCT00030052484.1 UniProtKB/TrEMBL
  ENSSSCT00030052514.1 UniProtKB/TrEMBL
  ENSSSCT00035107655.1 UniProtKB/TrEMBL
  ENSSSCT00035107705.1 UniProtKB/TrEMBL
  ENSSSCT00040101582.1 UniProtKB/TrEMBL
  ENSSSCT00040101606.1 UniProtKB/TrEMBL
  ENSSSCT00045022403.1 UniProtKB/TrEMBL
  ENSSSCT00045022423.1 UniProtKB/TrEMBL
  ENSSSCT00050091192.1 UniProtKB/TrEMBL
  ENSSSCT00050091194.1 UniProtKB/TrEMBL
  ENSSSCT00050091199.1 UniProtKB/TrEMBL
  ENSSSCT00055022668.1 UniProtKB/TrEMBL
  ENSSSCT00055022709.1 UniProtKB/TrEMBL
  ENSSSCT00055022745.1 UniProtKB/TrEMBL
  ENSSSCT00060068488.1 UniProtKB/TrEMBL
  ENSSSCT00060068494.1 UniProtKB/TrEMBL
  ENSSSCT00065033173.1 UniProtKB/TrEMBL
  ENSSSCT00065033180.1 UniProtKB/TrEMBL
  ENSSSCT00070060401.1 UniProtKB/TrEMBL
  ENSSSCT00070060408.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3860.10 UniProtKB/TrEMBL
InterPro DAACS UniProtKB/TrEMBL
  Na-dicarboxylate_symporter UniProtKB/TrEMBL
  Na-dicarboxylate_symporter_CS UniProtKB/TrEMBL
  Na:dicarbo_symporter_sf UniProtKB/TrEMBL
NCBI Gene SLC1A4 ENTREZGENE
PANTHER NEUTRAL AMINO ACID TRANSPORTER A UniProtKB/TrEMBL
  SODIUM/DICARBOXYLATE SYMPORTER-RELATED UniProtKB/TrEMBL
Pfam SDF UniProtKB/TrEMBL
PRINTS EDTRNSPORT UniProtKB/TrEMBL
PROSITE NA_DICARBOXYL_SYMP_1 UniProtKB/TrEMBL
  NA_DICARBOXYL_SYMP_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF118215 UniProtKB/TrEMBL
UniProt A0A4X1WAL7_PIG UniProtKB/TrEMBL
  A0A4X1WAU5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MLE6_PIG UniProtKB/TrEMBL
  A0A8D0WNL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HCK2_PIG UniProtKB/TrEMBL
  A0A8D1QDN6_PIG UniProtKB/TrEMBL
  I3LAL2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2R7L3 UniProtKB/TrEMBL
VGNC ID VGNC:92966 ENTREZGENE