SPEF1 (sperm flagellar 1) - Rat Genome Database

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Gene: SPEF1 (sperm flagellar 1) Sus scrofa
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Symbol: SPEF1
Name: sperm flagellar 1
RGD ID: 14027580
Description: ENCODES a protein that exhibits actin binding (inferred); microtubule binding (inferred); INVOLVED IN microtubule bundle formation (ortholog); ASSOCIATED WITH Inosine Triphosphatase Deficiency (ortholog); FOUND IN cytoplasm (ortholog); motile cilium (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: sperm flagellar protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1731,934,832 - 31,941,621 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11731,934,856 - 31,938,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,264,818 - 36,271,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SPEF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1731,934,832 - 31,941,621 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11731,934,856 - 31,938,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,264,818 - 36,271,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPEF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl203,777,504 - 3,781,448 (-)EnsemblGRCh38hg38GRCh38
GRCh38203,777,504 - 3,781,448 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37203,758,151 - 3,762,095 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,706,151 - 3,710,102 (-)NCBINCBI36hg18NCBI36
Build 34203,706,151 - 3,710,061NCBI
Celera203,820,021 - 3,823,972 (-)NCBI
Cytogenetic Map20p13NCBI
HuRef203,706,709 - 3,710,657 (-)NCBIHuRef
CHM1_1203,758,467 - 3,762,413 (-)NCBICHM1_1
Spef1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392131,012,181 - 131,016,730 (-)NCBIGRCm39mm39
GRCm39 Ensembl2131,012,181 - 131,029,202 (-)Ensembl
GRCm382131,170,261 - 131,174,810 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2131,170,261 - 131,187,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,995,997 - 131,000,546 (-)NCBIGRCm37mm9NCBIm37
MGSCv362130,995,997 - 131,000,546 (-)NCBImm8
Celera2132,394,333 - 132,398,883 (-)NCBICelera
Cytogenetic Map2F1NCBI
Spef1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23118,390,659 - 118,396,842 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3118,390,575 - 118,394,531 (-)Ensembl
Rnor_6.03123,712,907 - 123,720,787 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3123,714,564 - 123,718,432 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03130,212,953 - 130,219,185 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43118,877,343 - 118,881,211 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13118,782,916 - 118,786,719 (-)NCBI
Celera3117,198,821 - 117,202,689 (-)NCBICelera
Cytogenetic Map3q36NCBI
Spef1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541514,620,593 - 14,626,049 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541514,620,593 - 14,626,049 (-)NCBIChiLan1.0ChiLan1.0
SPEF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1203,615,358 - 3,619,390 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl203,615,358 - 3,619,390 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0203,858,548 - 3,863,150 (-)NCBIMhudiblu_PPA_v0panPan3
SPEF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12417,572,457 - 17,580,006 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2417,574,741 - 17,578,439 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,402,172 - 17,408,295 (+)NCBI
ROS_Cfam_1.02417,991,277 - 17,997,400 (+)NCBI
UMICH_Zoey_3.12417,586,132 - 17,593,665 (+)NCBI
UNSW_CanFamBas_1.02417,697,226 - 17,703,348 (+)NCBI
UU_Cfam_GSD_1.02418,024,874 - 18,031,001 (+)NCBI
Spef1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640166,486,052 - 166,492,305 (+)NCBI
SpeTri2.0NW_00493648514,917,352 - 14,923,669 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPEF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1234,462,933 - 34,467,575 (-)NCBI
ChlSab1.1 Ensembl234,462,896 - 34,466,923 (-)Ensembl
Vero_WHO_p1.0NW_0236660719,986,035 - 9,990,693 (+)NCBI
Spef1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247414,861,992 - 4,868,261 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 6 1 3 4 23 2 3 1
Below cutoff 4 3 1 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000056622   ⟹   ENSSSCP00000046438
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1731,934,832 - 31,941,621 (+)Ensembl
RefSeq Acc Id: NM_001195369   ⟹   NP_001182298
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11731,934,856 - 31,938,463 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001182298 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADC38873 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001182298   ⟸   NM_001195369
- UniProtKB: D3K5J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000046438   ⟸   ENSSSCT00000056622
Protein Domains
Calponin-homology (CH)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070022422 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000046438 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070037560 UniProtKB/TrEMBL
  ENSSSCP00070037564 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000056622 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070044574 UniProtKB/TrEMBL
  ENSSSCT00070044581 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/TrEMBL
  CH_2 UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100337683 UniProtKB/TrEMBL
NCBI Gene SPEF1 ENTREZGENE
Pfam CH_2 UniProtKB/TrEMBL
PROSITE PS50021 UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/TrEMBL
UniProt A0A287AQW2_PIG UniProtKB/TrEMBL
  A0A4X1V493_PIG UniProtKB/TrEMBL
  A0A4X1V8K1_PIG UniProtKB/TrEMBL
  D3K5J5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95685 ENTREZGENE