MYF5 (myogenic factor 5) - Rat Genome Database

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Gene: MYF5 (myogenic factor 5) Sus scrofa
Analyze
Symbol: MYF5
Name: myogenic factor 5
RGD ID: 14027431
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); protein dimerization activity (inferred); sequence-specific DNA binding (inferred); INVOLVED IN camera-type eye development (ortholog); cartilage condensation (ortholog); embryonic skeletal system morphogenesis (ortholog); ASSOCIATED WITH OPHTHALMOPLEGIA, EXTERNAL, WITH RIB AND VERTEBRAL ANOMALIES (ortholog); scoliosis (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: MYF-5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5100,752,890 - 100,755,494 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15100,753,440 - 100,755,558 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25105,701,164 - 105,703,283 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:9124704   PMID:9922391   PMID:15306724   PMID:15679890   PMID:18777094   PMID:24595098   PMID:25966141  


Genomics

Comparative Map Data
MYF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5100,752,890 - 100,755,494 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15100,753,440 - 100,755,558 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25105,701,164 - 105,703,283 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1280,716,912 - 80,719,671 (+)EnsemblGRCh38hg38GRCh38
GRCh381280,716,912 - 80,719,671 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371281,110,691 - 81,113,450 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361279,634,839 - 79,637,578 (+)NCBINCBI36hg18NCBI36
Build 341279,613,268 - 79,615,915NCBI
Celera1280,776,922 - 80,779,661 (+)NCBI
Cytogenetic Map12q21.31NCBI
HuRef1278,167,593 - 78,170,332 (+)NCBIHuRef
CHM1_11281,077,115 - 81,079,854 (+)NCBICHM1_1
Myf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910107,318,769 - 107,322,787 (-)NCBIGRCm39mm39
GRCm39 Ensembl10107,318,769 - 107,321,995 (-)Ensembl
GRCm3810107,482,908 - 107,486,927 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10107,482,908 - 107,486,134 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710106,919,964 - 106,923,190 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610106,887,018 - 106,890,244 (-)NCBImm8
Celera10109,425,392 - 109,428,623 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1055.95NCBI
Myf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2742,802,946 - 42,806,177 (-)NCBI
Rnor_6.0 Ensembl749,729,533 - 49,732,764 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0749,729,533 - 49,732,974 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0749,739,441 - 49,742,672 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4746,189,256 - 46,192,487 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1746,210,584 - 46,212,529 (-)NCBI
Celera739,675,643 - 39,678,874 (-)NCBICelera
Cytogenetic Map7q21NCBI
Myf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540519,345,943 - 19,348,453 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540519,345,943 - 19,348,453 (+)NCBIChiLan1.0ChiLan1.0
MYF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11281,347,640 - 81,350,389 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1281,347,324 - 81,350,389 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01278,236,945 - 78,239,701 (+)NCBIMhudiblu_PPA_v0panPan3
MYF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11523,049,235 - 23,051,604 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1523,048,585 - 23,051,970 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1523,473,030 - 23,475,426 (+)NCBI
ROS_Cfam_1.01523,410,137 - 23,412,529 (+)NCBI
UMICH_Zoey_3.11522,987,463 - 22,989,855 (+)NCBI
UNSW_CanFamBas_1.01523,046,938 - 23,049,333 (+)NCBI
UU_Cfam_GSD_1.01523,287,307 - 23,290,205 (+)NCBI
Myf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494537,300,158 - 37,303,273 (-)NCBI
SpeTri2.0NW_0049366981,609,227 - 1,611,283 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYF5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11176,189,122 - 76,193,830 (+)NCBI
ChlSab1.1 Ensembl1176,191,579 - 76,193,549 (+)Ensembl
Vero_WHO_p1.0NW_023666037169,243,360 - 169,246,115 (-)NCBI
Myf5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462483733,735 - 36,052 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

musculoskeletal system nervous system
High
Medium
Low 1 3
Below cutoff 1 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000001024   ⟹   ENSSSCP00000001002
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl5100,753,501 - 100,755,494 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000070997   ⟹   ENSSSCP00000066112
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl5100,752,890 - 100,755,494 (-)Ensembl
RefSeq Acc Id: NM_001278775   ⟹   NP_001265704
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.15100,753,440 - 100,755,558 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001265704   ⟸   NM_001278775
- UniProtKB: M9V7C8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001002   ⟸   ENSSSCT00000001024
RefSeq Acc Id: ENSSSCP00000066112   ⟸   ENSSSCT00000070997
Protein Domains
bHLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000937 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000001002 UniProtKB/TrEMBL
  ENSSSCP00000066112 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001024 UniProtKB/TrEMBL
  ENSSSCT00000070997 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro Basic UniProtKB/TrEMBL
  bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  Myf5 UniProtKB/TrEMBL
  Myogenic_factor UniProtKB/TrEMBL
KEGG Report ssc:100153269 UniProtKB/TrEMBL
NCBI Gene MYF5 ENTREZGENE
PANTHER PTHR11534 UniProtKB/TrEMBL
Pfam Basic UniProtKB/TrEMBL
  HLH UniProtKB/TrEMBL
  Myf5 UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART BASIC UniProtKB/TrEMBL
  HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A5G2QML5_PIG UniProtKB/TrEMBL
  F1RYN0_PIG UniProtKB/TrEMBL
  M9V7C8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90508 ENTREZGENE