TRMT1L (tRNA methyltransferase 1 like)

Gene: TRMT1L (tRNA methyltransferase 1 like) Sus scrofa

Analyze

Symbol:

TRMT1L

Name:

tRNA methyltransferase 1 like

RGD ID:

14024343

Description:

ENCODES a protein that exhibits metal ion binding (inferred); methyltransferase activity (inferred); RNA binding (inferred); INVOLVED IN adult behavior (ortholog); adult locomotory behavior (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); megacolon (ortholog); FOUND IN nucleus (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

TRMT1-like protein

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	126,300,390 - 126,347,274 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	126,302,642 - 126,347,277 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	138,748,234 - 138,795,992 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

megacolon (ISO)

parathyroid carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult behavior (ISO)

adult locomotory behavior (ISO)

methylation (IEA)

tRNA N2-guanine methylation (IBA,IEA)

tRNA processing (IEA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

metal ion binding (IEA)

methyltransferase activity (IEA)

protein binding (ISO)

RNA binding (IEA)

tRNA (guanine(10)-N2)-methyltransferase activity (IEA)

tRNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TRMT1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	126,300,390 - 126,347,274 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	126,302,642 - 126,347,277 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	138,748,234 - 138,795,992 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRMT1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	185,118,101 - 185,157,537 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	185,118,101 - 185,157,072 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	185,087,233 - 185,126,230 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	183,353,856 - 183,392,706 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	181,818,893 - 181,857,740	NCBI
Celera	1	158,197,913 - 158,236,811 (-)	NCBI		Celera
Cytogenetic Map	1	q25.3	NCBI
HuRef	1	156,322,500 - 156,361,523 (-)	NCBI		HuRef
CHM1_1	1	186,508,906 - 186,547,935 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	184,475,011 - 184,514,447 (-)	NCBI		T2T-CHM13v2.0

Trmt1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	151,304,293 - 151,333,934 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	151,304,293 - 151,333,912 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	151,428,542 - 151,458,183 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	151,428,542 - 151,458,161 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	153,275,778 - 153,305,313 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	153,190,866 - 153,220,377 (+)	NCBI		MGSCv36	mm8
Celera	1	153,857,643 - 153,887,243 (+)	NCBI		Celera
Cytogenetic Map	1	G1	NCBI
cM Map	1	64.12	NCBI

Trmt1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	66,060,186 - 66,093,247 (+)	NCBI		GRCr8
mRatBN7.2	13	63,510,097 - 63,543,268 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	63,510,204 - 63,543,266 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	66,129,826 - 66,162,884 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	67,394,444 - 67,427,506 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	64,657,528 - 64,690,880 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	68,785,889 - 68,819,018 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	68,785,827 - 68,818,990 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	73,748,125 - 73,781,250 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	66,301,000 - 66,334,062 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	66,314,936 - 66,347,916 (+)	NCBI
Celera	13	63,441,064 - 63,474,125 (+)	NCBI		Celera
Cytogenetic Map	13	q21	NCBI

Trmt1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955406	23,735,715 - 23,772,010 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRMT1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	64,565,241 - 64,604,765 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	64,248,811 - 64,288,381 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	160,642,659 - 160,681,709 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	164,795,113 - 164,833,940 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	164,795,113 - 164,833,940 (-)	Ensembl	panpan1.1		panPan2

TRMT1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	18,294,489 - 18,330,002 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	18,295,027 - 18,329,730 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	17,878,671 - 17,914,734 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	18,026,950 - 18,063,131 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	18,026,953 - 18,062,433 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	17,936,505 - 17,971,963 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	18,044,297 - 18,080,428 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	18,175,449 - 18,211,438 (-)	NCBI		UU_Cfam_GSD_1.0

Trmt1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	87,177,383 - 87,205,051 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	5,023,826 - 5,054,734 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	5,024,218 - 5,051,797 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRMT1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	44,232,374 - 44,272,610 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	44,232,433 - 44,272,616 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	45,438,628 - 45,478,986 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trmt1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624814	8,409,949 - 8,434,833 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TRMT1L
1427 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	10	3	3	5	2	23	2	3	3
Low		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021102636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002347095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU915492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU972398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01033108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000029214 ⟹ ENSSSCP00000023028

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	126,300,390 - 126,347,256 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000049159 ⟹ ENSSSCP00000033757

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	126,302,653 - 126,347,274 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000091286 ⟹ ENSSSCP00000065128

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	126,303,525 - 126,347,273 (-)	Ensembl

RefSeq Acc Id:

XM_021102636 ⟹ XP_020958295

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	126,302,642 - 126,347,276 (-)	NCBI

Sequence:

show sequence

TCGTTACGCCTCGGGGAAAAGGAAGCGGACGGGACCGTGAATCGCCGGCTCTGGCTTTTTATTT
TTCTGCTGACAGGATTGGGTCACTGGTTCTTCGTCTTTTGTCTGTTGCCCGCATCCTGCCCTCC
CCTTTTGCTGCCCCACTCCTCGGATCCGTCCTCTGGGCGTTCACGCCAGTTCTCTCACCCCGCC
GTGAGCCCCTCCTGGTCCCGGGGCGGGCCTGGCACGGAGGCGGTAACTACGGAGAATATGGCGG
AGGAGGAGCTGCTGCCCCAGGAGAAGGAGGAGGTGGAGGGGGCCCAGGGCCAGGTCCCGACCCC
GGCCCTGGATTCGGCTCCGGCCTCGGCCCCGGCACCGGACTCGGCTCCAGCGCCGGCCTCGGCT
CCCGTCCCAGCCCCTGCCCTGGCCCAGGCTCCGGCCCTGTCCCCGTCCCTAGCCTCTGCCCCTG
ACGAGGCTGAAAGCAATGGTCTAGTTAGTCCTTTGAAGTCAGTCTTAACTAGGCAAGATGAAGA
TGGCATATCTGAAACAGAATTGAAAATTGAGGAAAAAGAAGTTTTAAAAGAACCTCCTAGCATC
TTGGACTCATCTGATTTAACAAAAGAGAGACACATCTCAATTCAAAGGCAGCTTGCTGATCTAG
AGAAGTTAGCTTTTGTAACTGAAGGAGATTTTGATTCTACCAGTTCATTGAACTCCAATAATCT
TGATACAGGAAACAAGCAGATCTGTCCATTGTGCCCAAAGGAAAAATTCAGAGCTTGTAATAGC
CATAAGCTTCATCGTCACCTTCAAAATTTACACTGGAAAGTCTCAGTTGAATTTGAAGGTTACA
GAATGTGCATCTGTCACTTACCTTGTCGACCAGTGAAACCAAACATTATTGGAGAACAGTTATC
CAGTAAAATGGGCGCCCATTATCATTGTATCATTTGCTCGGCAACAATCACCAGAAGGACCGAT
ATGCTAGGACATGTTAAGCGCCATGTGAATAAAGGAGAGACCAAATCCAGGTATATTGCAGCTT
CCGCTGCTAAACCACCAAATGAAATTTTGAAAGAGGCAGACACAGATGTACAAGTGTGTCCTAA
CTATTCTGTGCCACAGAAAACAGATTCCTATTTTAATCCCAAAATGAAACTAAATCGGCAGCTA
ATATTCTGTACACTGGCTGCTTTGGCTGAGGAACGAAAACCTTTGGAATGTCTAGATGCCTTTG
GAGCTACTGGGATAATGGGACTGCAGTGGGCAAAACATCTCGGAAATGCGGTCAAGGTCACAAT
TAATGATTTGAATGAAAACTCTGTGACGTTGATTCAGGAGAACTGCCATTTAAACAAATTGAAA
GTAGTGGTGGACAGTAAGGAAAAGGAAGAGAGTGATGATATTCTTGAAGAAGGAGAGGAGAACC
TTGGTAATGTAAAAGTGACCAAAATGGATGCCAATGTACTGATGCATTTGAGGTCTTTTGATTT
CATACACCTAGACCCTTTTGGAACATCAGTGAACTATCTAGATTCTGCGTTCAGAAATATAAGA
AACCTTGGCATAGTGTCAGTGACGTCTACAGATATCAGTTCCTTATATGCCAAGGCACAACATG
TTGCCCGGCGTCACTACGGCTGTAACATCGTCCGAACTGAATATTACAAGGAGCTGGCAGCCAG
AATTGTTGTAGCTGCAGTGGCAAGAGCTGCAGCTCGATGTAACAAAGGCATAGAGGTGCTATTT
GCAGTGGCTCTGGAACATTTTGTGTTGGTTGTTGTGAGAGTTTTGAGGGGACCTACTTCTGCAG
ATGAAACAGCCAAGAAGATTCAGTACCTAATCCATTGTCAGTGGTGTGAAGAGAGAATTTTTCA
GAAGGATGGTAATATGGTAGAAGAAAACCCATATAAACAGCTACCGTGTAACTGTTATGGCAGC
ATGCCTGGAAAGACAGCAATAGAACTTGGACCTCTATGGTCGAGTTCCCTTTTCAATACTGGAT
TCCTCAAAAGAATGCTGTTTGAATCTCTTCACCATGGTTTAGATGACATTCAGACCCTAATAAA
GACATTAATCTTTGAGTCAGAGTGCACTCCTCAAAAAGAATGTGGAGTACTTAAAACTACAGAT
GATACCACAACAGAAAACCATGTTGCACAAGGAAAGAGAAAAAGTAATGAAGCAATCACAAATT
TAGCCAAGAAGCAAAAGACCGATGTCAGTACTGAACATCCTCCCTTCTATTATAACATCCACAG
ACACAGCATTAAAGGAATGAATATGCCAAAGTTAAAAAAGTTTTTGTGCTATCTTTCTCAAGCA
GGCTTTCGAGTAAGCCGAACTCATTTTGACCCAATGGGTGTTCGTACAGATGCACCTCTAATGC
AGTTTAAATCTATCCTTTTAAAGTACAGCACTCCCACTTACACCGGAGGACAGTCGGAGGGCCA
TGTTCAATCAGCAGCTGAAGATACAGTAGCTAACAGGGTTGAAATGTCAGTGAATGACAAAGCA
GAAGCAAGTGGTTGCAGAAGATGGTAAATGTAAAGAAAAATTTATTCCCAGATGTCTGAATTAA
TGGCCTAATAGTTCTCTATACCAGCTGTAGTGCTTTTTCTATTCTTTCAATTCAGTGGTGTAAA
AATAAAAAAACAGTGCTGTTTTCATTCAGAAAATTAGCAGTTTCTAACTTAGCTGGCTTGGGAA
CTATGCTTTCCAAGTTTTTATTTTAAAGAAAACTTCAAATTTTAGTAAAACATTACATATGAAG
CCAAGTTTATGACTGAGATCACCCTACTGTTTAAAATAACTCAAAAAATTTTCAAATGCAAAGT
GTTTGGAATTTTATGTACGTTAATGTGTTAGGACATCCTTTATTTAATCTCATCTCAAACTGAT
TTGTGCTGTTTATATTTTTTTGTTTGTAGTGTGTAAGATTAAGCCAGAGCCTTTTATTAAAATG
ACCCTAAATTGAATATTGGAGGAACAAAGTCCTTTTAAGTCACTAATGGACTATTTCACAATTA
CAAGCTAAAATATGTTCCTGATTTTAAGAAATCATACCTCATACATTGATCTTTTAATTTATTA
CTAGTTTTTGAGAAATTAAATACTTGCCTAAGATAGAAATACATTTTTCTTTTAAGTTTAACAT
CTAGTTAACCGAACTTCAGAGTAAGATTTTGTTAAATTGAGACCATTGTTCTAATATAATAATG
GTTCACAAGCACTAAATTCTGAAGAGGAGAAATTTTGTTATGAATTAAACAGGTTGGGTGATCT
CAAATGTTTTCAGTTAATGCACGTACAATATTCATTTGCTTGGTTGTGCTACCTCTCAGGAGTA
AAATTTAAGAAATTTATGAAGTGAGAATTTTTTTGGTTTTAGAGTGGTTTGTTTTGTGTTTGAT
TTTTGGTGTGTGTATGTGCTAGGTTTTGTATAAGTAGCCCAGGCTAATATGACTATGAAAATTA
GTTGCAAAAAATCTTGTTTCCATTAATAAATATTGTTCTTGCTTTATCTGAATATAAAAATTTG
GATGAAAATATA

hide sequence

RefSeq Acc Id:

XR_002347095

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	126,302,644 - 126,347,277 (-)	NCBI

Sequence:

show sequence

GTCGTTACGCCTCGGGGAAAAGGAAGCGGACGGGACCGTGAATCGCCGGCTCTGGCTTTTTATT
TTTCTGCTGACAGGATTGGGTCACTGGTTCTTCGTCTTTTGTCTGTTGCCCGCATCCTGCCCTC
CCCTTTTGCTGCCCCACTCCTCGGATCCGTCCTCTGGGCGTTCACGCCAGTTCTCTCACCCCGC
CGTGAGCCCCTCCTGGTCCCGGGGCGGGCCTGGCACGGAGGCGGTAACTACGGAGAATATGGCG
GAGGAGGAGCTGCTGCCCCAGGAGAAGGAGGAGGTGGAGGGGGCCCAGGGCCAGGTCCCGACCC
CGGCCCTGGATTCGGCTCCGGCCTCGGCCCCGGCACCGGACTCGGCTCCAGCGCCGGCCTCGGC
TCCCGTCCCAGCCCCTGCCCTGGCCCAGGCTCCGGCCCTGTCCCCGTCCCTAGCCTCTGCCCCT
GACGAGGCTGAAAGCAATGGTCTAGTTAGTCCTTTGAAGTCAGTCTTAACTAGGCAAGATGAAG
ATGGCATATCTGAAACAGAATTGAAAATTGAGGAAAAAGAAGTTTTAAAAGAACCTCCTAGCAT
CTTGGACTCATCTGATTTAACAAAAGAGAGACACATCTCAATTCAAAGGCAGCTTGCTGATCTA
GAGAAGTTAGCTTTTGTAACTGAAGGAGATTTTGATTCTACCAGTTCATTGAACTCCAATAATC
TTGATACAGGAAACAAGCAGATCTGTCCATTGTGCCCAAAGGAAAAATTCAGAGCTTGTAATAG
CCATAAGCTTCATCGTCACCTTCAAAATTTACACTGGAAAGTCTCAGTTGAATTTGAAGGTTAC
AGAATGTGCATCTGTCACTTACCTTGTCGACCAGTGAAACCAAACATTATTGGAGAACAGTTAT
CCAGTAAAATGGGCGCCCATTATCATTGTATCATTTGCTCGGCAACAATCACCAGAAGGACCGA
TATGCTAGGACATGTTAAGCGCCATGTGAATAAAGGAGAGACCAAATCCAGGTATATTGCAGCT
TCCGCTGCTAAACCACCAAATGAAATTTTGAAAGAGGCAGACACAGATGTACAAGTGTGTCCTA
ACTATTCTGTGCCACAGAAAACAGATTCCTATTTTAATCCCAAAATGAAACTAAATCGGCAGCT
AATATTCTGTACACTGGCTGCTTTGGCTGAGGAACGAAAACCTTTGGAATGTCTAGATGCCTTT
GGAGCTACTGGGATAATGGGACTGCAGTGGGCAAAACATCTCGGAAATGCGGTCAAGGTCACAA
TTAATGATTTGAATGAAAACTCTGTGACGTTGATTCAGGAGAACTGCCATTTAAACAAATTGAA
AGTAGTGGTGGACAGTAAGGAAAAGGAAGAGAGTGATGATATTCTTGAAGAAGGAGAGGAGAAC
CTTGGTAATGTAAAAGTGACCAAAATGGATGCCAATGTACTGATGCATTTGAGGTCTTTTGATT
TCATACACCTAGACCCTTTTGGAACATCAGTGAACTATCTAGATTCTGCGTTCAGAAATATAAG
AAACCTTGGCATAGTGTCAGTGACGTCTACAGATATCAGTTCCTTATATGCCAAGGCACAACAT
GTTGCCCGGCGTCACTACGGCTGTAACATCGTCCGAACTGAATATTACAAGGAGCTGGCAGCCA
GAATTGTTGTAGCTGCAGTGGCAAGAGCTGCAGCTCGATGTAACAAAGGCATAGAGGTGCTATT
TGCAGTGGCTCTGGAACATTTTGTGTTGGTTGTTGTGAGAGTTTTGAGGGGACCTACTTCTGCA
GATGAAACAGCCAAGAAGATTCAGTACCTAATCCATTGTCAGTGGTGTGAAGAGAGAATTTTTC
AGAAGGATGGTAATATGGTAGAAGAAAACCCATATAAACAGCTACCGTGTAACTGTTATGGCAG
CATGCCTGGAAAGACAGCAATAGAACTTGGACCTCTATGGTCGAGTTCCCTTTTCAATACTGGA
TTCCTCAAAAGAATGCTGTTTGAATCTCTTCACCATGGTTTAGATGACATTCAGACCCTAATAA
AGACATTAATCTTTGAGTCAGAGTGCACTCCTCAAAGTCAGTTTTCAGTTCGCGCACCTTGAAA
TCTCAACAAGCAAGATAACTAATTGAATACTCATTTACTAGCTTACAAATTAGTTATGAAAAAT
ACTCCATGTTCTTATCTTTATTTGATGTTATGATCAAAAGCAGTATAAGTAGTGTGCTTTAACT
AAATCCTCTTTAATGTCTGATCATAATCTGGTTAACTTTTATTGAATCATAGTTTTCTTCCGGT
TTATATTTGGGACAAGAAGTGAATAATGCTTTTATTAAAATAGATGTATTTTTAAATTTTAGCA
GATGAAAAGAAGGCTGTTGCGATTTTATTAACCTATATCTGCTTTCTAGAAAGAGAAACCATAG
GTATTTCTGAGGATAGTGTGGCCAAAAATTTTGTAATATCTGTTGAGACATAGAAGGTAGATGT
ACACTTATAACTTAGTAAAGCTAACTTTTTTCTTTTTTTTTTTAAGTATAAATAGGCTTTTATA
TTATAGTTTTATCTGGCTATTGATGTACGGGTGGGCCTATTAATCATCCTAGCATTCTCATGTC
ATCAGAAGGAGCAGTTCTTATTGGAGGAAGAATGTGGAGTACTTAAAACTACAGATGATACCAC
AACAGAAAACCATGTTGCACAAGGAAAGAGAAAAAGTAATGAAGCAATCACAAATTTAGCCAAG
AAGCAAAAGACCGATGTCAGTACTGAACATCCTCCCTTCTATTATAACATCCACAGACACAGCA
TTAAAGGAATGAATATGCCAAAGTTAAAAAAGTTTTTGTGCTATCTTTCTCAAGCAGGCTTTCG
AGTAAGCCGAACTCATTTTGACCCAATGGGTGTTCGTACAGATGCACCTCTAATGCAGTTTAAA
TCTATCCTTTTAAAGTACAGCACTCCCACTTACACCGGAGGACAGTCGGAGGGCCATGTTCAAT
CAGCAGCTGAAGATACAGTAGCTAACAGGGTTGAAATGTCAGTGAATGACAAAGCAGAAGCAAG
TGGTTGCAGAAGATGGTAAATGTAAAGAAAAATTTATTCCCAGATGTCTGAATTAATGGCCTAA
TAGTTCTCTATACCAGCTGTAGTGCTTTTTCTATTCTTTCAATTCAGTGGTGTAAAAATAAAAA
AACAGTGCTGTTTTCATTCAGAAAATTAGCAGTTTCTAACTTAGCTGGCTTGGGAACTATGCTT
TCCAAGTTTTTATTTTAAAGAAAACTTCAAATTTTAGTAAAACATTACATATGAAGCCAAGTTT
ATGACTGAGATCACCCTACTGTTTAAAATAACTCAAAAAATTTTCAAATGCAAAGTGTTTGGAA
TTTTATGTACGTTAATGTGTTAGGACATCCTTTATTTAATCTCATCTCAAACTGATTTGTGCTG
TTTATATTTTTTTGTTTGTAGTGTGTAAGATTAAGCCAGAGCCTTTTATTAAAATGACCCTAAA
TTGAATATTGGAGGAACAAAGTCCTTTTAAGTCACTAATGGACTATTTCACAATTACAAGCTAA
AATATGTTCCTGATTTTAAGAAATCATACCTCATACATTGATCTTTTAATTTATTACTAGTTTT
TGAGAAATTAAATACTTGCCTAAGATAGAAATACATTTTTCTTTTAAGTTTAACATCTAGTTAA
CCGAACTTCAGAGTAAGATTTTGTTAAATTGAGACCATTGTTCTAATATAATAATGGTTCACAA
GCACTAAATTCTGAAGAGGAGAAATTTTGTTATGAATTAAACAGGTTGGGTGATCTCAAATGTT
TTCAGTTAATGCACGTACAATATTCATTTGCTTGGTTGTGCTACCTCTCAGGAGTAAAATTTAA
GAAATTTATGAAGTGAGAATTTTTTTGGTTTTAGAGTGGTTTGTTTTGTGTTTGATTTTTGGTG
TGTGTATGTGCTAGGTTTTGTATAAGTAGCCCAGGCTAATATGACTATGAAAATTAGTTGCAAA
AAATCTTGTTTCCATTAATAAATATTGTTCTTGCTTTATCTGAATATAAAAATTTGGATGAAAA
TA

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Protein Sequences


Protein RefSeqs	XP_020958295	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000023028
	ENSSSCP00000023028.3
	ENSSSCP00000033757.2
	ENSSSCP00000065128.2
	ENSSSCP00005030204.1
	ENSSSCP00065002415.1

RefSeq Acc Id:

XP_020958295 ⟸ XM_021102636

- UniProtKB:

A0A8D1XAV8 (UniProtKB/TrEMBL), A0A8D0JUX9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEEELLPQEKEEVEGAQGQVPTPALDSAPASAPAPDSAPAPASAPVPAPALAQAPALSPSLAS
APDEAESNGLVSPLKSVLTRQDEDGISETELKIEEKEVLKEPPSILDSSDLTKERHISIQRQLA
DLEKLAFVTEGDFDSTSSLNSNNLDTGNKQICPLCPKEKFRACNSHKLHRHLQNLHWKVSVEFE
GYRMCICHLPCRPVKPNIIGEQLSSKMGAHYHCIICSATITRRTDMLGHVKRHVNKGETKSRYI
AASAAKPPNEILKEADTDVQVCPNYSVPQKTDSYFNPKMKLNRQLIFCTLAALAEERKPLECLD
AFGATGIMGLQWAKHLGNAVKVTINDLNENSVTLIQENCHLNKLKVVVDSKEKEESDDILEEGE
ENLGNVKVTKMDANVLMHLRSFDFIHLDPFGTSVNYLDSAFRNIRNLGIVSVTSTDISSLYAKA
QHVARRHYGCNIVRTEYYKELAARIVVAAVARAAARCNKGIEVLFAVALEHFVLVVVRVLRGPT
SADETAKKIQYLIHCQWCEERIFQKDGNMVEENPYKQLPCNCYGSMPGKTAIELGPLWSSSLFN
TGFLKRMLFESLHHGLDDIQTLIKTLIFESECTPQKECGVLKTTDDTTTENHVAQGKRKSNEAI
TNLAKKQKTDVSTEHPPFYYNIHRHSIKGMNMPKLKKFLCYLSQAGFRVSRTHFDPMGVRTDAP
LMQFKSILLKYSTPTYTGGQSEGHVQSAAEDTVANRVEMSVNDKAEASGCRRW

hide sequence

RefSeq Acc Id:

ENSSSCP00000033757 ⟸ ENSSSCT00000049159

RefSeq Acc Id:

ENSSSCP00000023028 ⟸ ENSSSCT00000029214

RefSeq Acc Id:

ENSSSCP00000065128 ⟸ ENSSSCT00000091286

Protein Domains

C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000021393	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005030554	UniProtKB/TrEMBL
	ENSSSCG00065003954	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000029214	ENTREZGENE
	ENSSSCT00000029214.4	UniProtKB/TrEMBL
	ENSSSCT00000049159.3	UniProtKB/TrEMBL
	ENSSSCT00000091286.2	UniProtKB/TrEMBL
	ENSSSCT00005048940.1	UniProtKB/TrEMBL
	ENSSSCT00065005449.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.56.70	UniProtKB/TrEMBL
	3.40.50.150	UniProtKB/TrEMBL
InterPro	SAM-dependent_MTases	UniProtKB/TrEMBL
	Trm1	UniProtKB/TrEMBL
	tRNA_met_Trm1_C	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	TRMT1L	ENTREZGENE
PANTHER	PTHR10631	UniProtKB/TrEMBL
	TRMT1-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	TRM	UniProtKB/TrEMBL
PROSITE	SAM_MT_TRM1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53335	UniProtKB/TrEMBL
UniProt	A0A286ZQK8_PIG	UniProtKB/TrEMBL
	A0A5G2QKR8_PIG	UniProtKB/TrEMBL
	A0A8D0JUX9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1XAV8	ENTREZGENE, UniProtKB/TrEMBL
	I3LG35_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:94447	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar