CPA6 (carboxypeptidase A6) - Rat Genome Database

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Gene: CPA6 (carboxypeptidase A6) Sus scrofa
Analyze
Symbol: CPA6
Name: carboxypeptidase A6
RGD ID: 14023921
Description: ENCODES a protein that exhibits carboxypeptidase activity (inferred); hydrolase activity (inferred); metal ion binding (inferred); INVOLVED IN proteolysis (inferred); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); Confusion (ortholog); Developmental Disabilities (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl467,158,318 - 67,411,593 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1467,157,341 - 67,411,582 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2473,245,237 - 73,378,004 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IBA,IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CPA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl467,158,318 - 67,411,593 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1467,157,341 - 67,411,582 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2473,245,237 - 73,378,004 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38867,422,038 - 67,746,360 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl867,422,038 - 67,746,378 (-)EnsemblGRCh38hg38GRCh38
GRCh37868,334,273 - 68,658,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36868,496,962 - 68,821,134 (-)NCBINCBI36Build 36hg18NCBI36
Build 34868,496,961 - 68,821,134NCBI
Celera864,327,814 - 64,651,850 (-)NCBICelera
Cytogenetic Map8q13.2NCBI
HuRef863,826,466 - 64,151,152 (-)NCBIHuRef
CHM1_1868,390,603 - 68,714,811 (-)NCBICHM1_1
T2T-CHM13v2.0867,848,501 - 68,172,795 (-)NCBIT2T-CHM13v2.0
Cpa6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39110,366,016 - 10,790,277 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl110,394,945 - 10,790,170 (-)EnsemblGRCm39 Ensembl
GRCm38110,295,791 - 10,720,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl110,324,720 - 10,719,945 (-)EnsemblGRCm38mm10GRCm38
MGSCv37110,314,808 - 10,710,024 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36110,309,941 - 10,705,157 (-)NCBIMGSCv36mm8
Celera110,300,911 - 10,702,680 (-)NCBICelera
Cytogenetic Map1A2NCBI
cM Map12.45NCBI
Cpa6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8513,309,660 - 13,671,429 (+)NCBIGRCr8
mRatBN7.258,526,708 - 8,888,492 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl58,526,741 - 8,888,485 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx510,930,628 - 11,044,410 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0512,560,219 - 12,674,305 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0512,265,294 - 12,379,064 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.058,215,443 - 8,574,655 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl58,459,660 - 8,574,655 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0513,026,747 - 13,383,787 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.458,287,865 - 8,403,566 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.158,040,001 - 8,403,157 (+)NCBI
Celera58,291,791 - 8,407,096 (+)NCBICelera
Cytogenetic Map5q11NCBI
Cpa6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544411,624,806 - 11,921,509 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544411,624,842 - 11,922,293 (+)NCBIChiLan1.0ChiLan1.0
CPA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2783,155,786 - 83,480,594 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1858,797,970 - 59,122,643 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0863,962,991 - 64,285,840 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1865,623,975 - 65,947,104 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl865,624,306 - 65,946,848 (-)Ensemblpanpan1.1panPan2
CPA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12916,914,623 - 17,243,875 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2916,914,985 - 17,244,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2917,230,020 - 17,559,378 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02916,995,824 - 17,325,739 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2916,995,976 - 17,325,863 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12917,028,356 - 17,357,862 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02917,126,991 - 17,450,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02917,384,643 - 17,721,112 (-)NCBIUU_Cfam_GSD_1.0
Cpa6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530368,021,252 - 68,147,709 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364966,484,438 - 6,761,816 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364966,484,438 - 6,761,816 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1863,281,059 - 63,590,016 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl863,281,180 - 63,374,824 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603977,914,001 - 78,222,591 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpa6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474423,478,907 - 23,927,318 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474423,478,907 - 23,928,024 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CPA6
7941 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system reproductive system
High
Medium
Low 7 2 6 2
Below cutoff 3 3 8 1

Sequence


RefSeq Acc Id: ENSSSCT00000006795   ⟹   ENSSSCP00000006611
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl467,158,043 - 67,411,593 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000034412   ⟹   ENSSSCP00000028934
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl467,158,318 - 67,411,593 (+)Ensembl
RefSeq Acc Id: XM_013996693   ⟹   XP_013852147
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1467,158,388 - 67,407,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021089270   ⟹   XP_020944929
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1467,157,341 - 67,411,582 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021089271   ⟹   XP_020944930
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1467,158,350 - 67,407,243 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020944929   ⟸   XM_021089270
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UW75 (UniProtKB/TrEMBL),   K7GM46 (UniProtKB/TrEMBL),   A0A8D1HII5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944930   ⟸   XM_021089271
- Peptide Label: isoform X2
- UniProtKB: A0A8D1HII5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013852147   ⟸   XM_013996693
- Peptide Label: isoform X2
- UniProtKB: A0A8D1HII5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000028934   ⟸   ENSSSCT00000034412
RefSeq Acc Id: ENSSSCP00000006611   ⟸   ENSSSCT00000006795

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006200 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015045664 UniProtKB/TrEMBL
  ENSSSCG00025018859 UniProtKB/TrEMBL
  ENSSSCG00030035962 UniProtKB/TrEMBL
  ENSSSCG00035024811 UniProtKB/TrEMBL
  ENSSSCG00040002790 UniProtKB/TrEMBL
  ENSSSCG00045013327 UniProtKB/TrEMBL
  ENSSSCG00050051388 UniProtKB/TrEMBL
  ENSSSCG00060054727 UniProtKB/TrEMBL
  ENSSSCG00065019351 UniProtKB/TrEMBL
  ENSSSCG00070019864 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000034412 ENTREZGENE
  ENSSSCT00000034412.3 UniProtKB/TrEMBL
  ENSSSCT00015060921.1 UniProtKB/TrEMBL
  ENSSSCT00025025574.1 UniProtKB/TrEMBL
  ENSSSCT00030049938.1 UniProtKB/TrEMBL
  ENSSSCT00035032622.1 UniProtKB/TrEMBL
  ENSSSCT00040003432.1 UniProtKB/TrEMBL
  ENSSSCT00045022714.1 UniProtKB/TrEMBL
  ENSSSCT00050069969.1 UniProtKB/TrEMBL
  ENSSSCT00060074517.1 UniProtKB/TrEMBL
  ENSSSCT00065025760.1 UniProtKB/TrEMBL
  ENSSSCT00070039387.1 UniProtKB/TrEMBL
  ENSSSCT00070039390.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.340 UniProtKB/TrEMBL
  Zn peptidases UniProtKB/TrEMBL
InterPro CPAH UniProtKB/TrEMBL
  M14A-like_propep UniProtKB/TrEMBL
  M14A_act_pep UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
NCBI Gene CPA6 ENTREZGENE
PANTHER CARBOXYPEPTIDASE A6 UniProtKB/TrEMBL
  PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B UniProtKB/TrEMBL
Pfam Peptidase_M14 UniProtKB/TrEMBL
  Propep_M14 UniProtKB/TrEMBL
PRINTS CRBOXYPTASEA UniProtKB/TrEMBL
PROSITE CARBOXYPEPT_ZN_2 UniProtKB/TrEMBL
SMART Zn_pept UniProtKB/TrEMBL
Superfamily-SCOP Protease propeptides/inhibitors UniProtKB/TrEMBL
  Zn-dependent exopeptidases UniProtKB/TrEMBL
UniProt A0A4X1UW54_PIG UniProtKB/TrEMBL
  A0A4X1UW75 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HII5 ENTREZGENE, UniProtKB/TrEMBL
  K7GM46 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86932 ENTREZGENE