LOC100515394 (UDP-glucuronosyltransferase 2C1) - Rat Genome Database

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Gene: LOC100515394 (UDP-glucuronosyltransferase 2C1) Sus scrofa
Analyze
Symbol: LOC100515394
Name: UDP-glucuronosyltransferase 2C1
RGD ID: 14022526
Description: ENCODES a protein that exhibits glucuronosyltransferase activity (inferred); glycosyltransferase activity (inferred); transferase activity (inferred); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP glucuronosyltransferase 2 family, polypeptide B17; UDP glucuronosyltransferase 2 family, polypeptide B4; UDP-glucuronosyltransferase 2B17; UGT2B17; UGT2B4
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1866,407,691 - 66,430,844 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2870,852,458 - 70,875,838 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Variants

.
Variants in LOC100515394
444 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system nervous system
High
Medium
Low 3 1
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: XM_003129067   ⟹   XP_003129115
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1866,407,691 - 66,430,844 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003129115 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000021633
  ENSSSCP00000021633.3
  ENSSSCP00000076195.1
  ENSSSCP00000080957.1
  ENSSSCP00005005566.1
  ENSSSCP00025014337.1
  ENSSSCP00045033717.1
  ENSSSCP00050042490.1
Reference Protein Sequences
RefSeq Acc Id: XP_003129115   ⟸   XM_003129067
- UniProtKB: A0A8D1IIM8 (UniProtKB/TrEMBL),   I3LC60 (UniProtKB/TrEMBL),   A0A8D0I9F7 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000062662 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005006036 UniProtKB/TrEMBL
  ENSSSCG00025025208 UniProtKB/TrEMBL
  ENSSSCG00045028366 UniProtKB/TrEMBL
  ENSSSCG00050072092 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026903 ENTREZGENE
  ENSSSCT00000026903.4 UniProtKB/TrEMBL
  ENSSSCT00000094615.1 UniProtKB/TrEMBL
  ENSSSCT00000100077.1 UniProtKB/TrEMBL
  ENSSSCT00005009379.1 UniProtKB/TrEMBL
  ENSSSCT00025034420.1 UniProtKB/TrEMBL
  ENSSSCT00045048500.1 UniProtKB/TrEMBL
  ENSSSCT00050098406.1 UniProtKB/TrEMBL
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/TrEMBL
InterPro UDP_glucos_trans UniProtKB/TrEMBL
  UDP_glycos_trans_CS UniProtKB/TrEMBL
KEGG Report ssc:100515394 UniProtKB/TrEMBL
NCBI Gene LOC100515394 ENTREZGENE
PANTHER EG:EG0003.4 PROTEIN-RELATED UniProtKB/TrEMBL
  UDP-GLUCURONOSYLTRANSFERASE 2A1-LIKE UniProtKB/TrEMBL
Pfam UDPGT UniProtKB/TrEMBL
PROSITE UDPGT UniProtKB/TrEMBL
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/TrEMBL
UniProt A0A8D0I9F7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IIM8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FN87_PIG UniProtKB/TrEMBL
  I3LC60 ENTREZGENE, UniProtKB/TrEMBL
  I3LJ68_PIG UniProtKB/TrEMBL