OCLN (occludin) - Rat Genome Database

Name: OCLN
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: OCLN (occludin) Sus scrofa

Analyze

Symbol:

OCLN

Name:

occludin

RGD ID:

14021365

Description:

ENCODES a protein that exhibits protein domain specific binding (inferred); INVOLVED IN cell-cell junction organization (ortholog); cellular response to tumor necrosis factor (ortholog); positive regulation of lamellipodium assembly (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); amenorrhea (ortholog); Brain Injuries, Traumatic (ortholog); FOUND IN cell junction (ortholog); cell leading edge (ortholog); cell surface (ortholog); INTERACTS WITH (S)-nicotine; deoxynivalenol; diquat

Type:

protein-coding

RefSeq Status:

PROVISIONAL

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OCLN (occludin)	HGNC	Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Ocln (occludin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ocln (occludin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ocln (occludin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OCLN (occludin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OCLN (occludin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ocln (occludin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	OCLN (occludin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ocln (occludin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	47,600,498 - 47,654,033 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	47,600,175 - 47,652,435 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	51,547,473 - 51,598,116 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute kidney failure (ISO)

amenorrhea (ISO)

Brain Injuries, Traumatic (ISO)

Breast Neoplasms (ISO)

Burns (ISO)

Crohn's disease (ISO)

Developmental Disabilities (ISO)

diabetic retinopathy (ISO)

disease of cellular proliferation (ISO)

hepatic veno-occlusive disease (ISO)

Neoplastic Cell Transformation (ISO)

Neurodevelopmental Disorders (ISO)

pseudo-TORCH syndrome 1 (ISO)

retinal disease (ISO)

Splenomegaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (EXP)

deoxynivalenol (EXP)

diquat (EXP)

fumonisin B1 (EXP)

melamine (EXP)

nicotine (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bicellular tight junction assembly (IEA)

cell-cell junction organization (ISO)

cellular response to tumor necrosis factor (ISO)

negative regulation of gene expression (IEA)

negative regulation of protein phosphorylation (IEA)

positive regulation of blood-brain barrier permeability (IEA)

positive regulation of gene expression (IEA)

positive regulation of glucose import (IEA)

positive regulation of lamellipodium assembly (ISO)

positive regulation of microtubule polymerization (ISO)

positive regulation of wound healing (ISO)

protein localization to cell leading edge (ISO)

regulation of glucose transmembrane transport (ISO)

response to interleukin-18 (ISO)

tight junction organization (ISO)

Cellular Component

apical plasma membrane (IEA)

apicolateral plasma membrane (IEA)

bicellular tight junction (IEA)

cell junction (ISO)

cell leading edge (ISO)

cell surface (ISO)

cell-cell junction (ISO)

cytoplasmic vesicle (ISO)

endocytic vesicle (IEA)

integral component of membrane (IEA)

lateral plasma membrane (ISO)

lysosomal membrane (IEA)

plasma membrane (IEA)

protein-containing complex (IEA)

tight junction (ISO)

Molecular Function

protein binding (ISO)

protein domain specific binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

transforming growth factor-beta Smad dependent signaling pathway (ISO)

References

Additional References at PubMed

PMID:9247194	PMID:14681463	PMID:19267955	PMID:20197061	PMID:21338560

Genomics

Comparative Map Data

OCLN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	47,600,498 - 47,654,033 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	47,600,175 - 47,652,435 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	51,547,473 - 51,598,116 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OCLN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	5	69,492,292 - 69,558,104 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	5	69,492,547 - 69,558,104 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	5	68,788,119 - 68,853,931 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	68,823,875 - 68,885,889 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	5	68,823,874 - 68,885,887	NCBI
Cytogenetic Map	5	q13.2	NCBI
HuRef	5	65,800,577 - 65,803,347 (+)	NCBI		HuRef
HuRef	5	65,744,381 - 65,800,380 (+)	NCBI		HuRef
CHM1_1	5	68,787,783 - 68,853,763 (+)	NCBI		CHM1_1

Ocln
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	100,633,012 - 100,689,226 (-)	NCBI	GRCm39		mm39
GRCm38	13	100,496,504 - 100,552,718 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	100,496,507 - 100,552,718 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	101,267,322 - 101,322,453 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	13	101,597,624 - 101,652,755 (-)	NCBI			mm8
Celera	13	104,112,684 - 104,167,697 (-)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	53.23	NCBI

Ocln
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	2	30,527,327 - 30,577,218 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	30,527,715 - 30,577,218 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	49,686,707 - 49,737,380 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	31,317,090 - 31,367,485 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	31,237,461 - 31,287,854 (-)	NCBI
Celera	2	27,670,881 - 27,719,967 (-)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

Ocln
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955575	163,646 - 210,379 (+)	NCBI	ChiLan1.0	ChiLan1.0

OCLN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	46,022,538 - 46,080,549 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	46,023,437 - 46,069,342 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	44,447,230 - 44,509,637 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

OCLN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	2	54,500,299 - 54,545,430 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	2	54,500,299 - 54,545,430 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Ocln
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936480	99,516 - 152,834 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OCLN
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	65,581,943 - 65,641,516 (+)	NCBI
ChlSab1.1 Ensembl	4	65,582,460 - 65,644,787 (+)	Ensembl

Ocln
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624905	333,853 - 388,990 (+)	NCBI

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	7						1	3
Low	3	3	3	2	2	23	1		1
Below cutoff		1		3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001163647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005672521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005672522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005672523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005672524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005672525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK232170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK232905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK393282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK393514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN400888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01001125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U79554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSSCT00000057617 ⟹ ENSSSCP00000044638

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	47,612,815 - 47,654,033 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000060865 ⟹ ENSSSCP00000041435

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	47,600,498 - 47,654,033 (+)	Ensembl

RefSeq Acc Id:

NM_001163647 ⟹ NP_001157119

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	16	47,600,522 - 47,650,674 (+)	NCBI

Sequence:

show sequence

ACTGCGTCAGGTGCACCCTCCAGATTGGCTGATCTCGAGAGCTACGGGGCGTTGCCCATCCTGA
AGATCAGGTGACCCGCTGACATCAGCCATGTCATCCAGGCCTCTTGAAAGTCCACCTCCTTATA
GGCCTGATGAATTCAAACCCAATCATTATGCACCCAGCAACGACATATATGGTGGAGAGACGCC
CATTCGACCAATGCTTTCTCAGCCAGCGTATTCTTTCTACCCAGAAGATGAAATTCTCCACTTT
TACAAATGGACCTCTCCTCCAGGAGTGATTCGGATTCTGTCTATGCTCGTTATCGTGATGTGCA
TTGCTATCTTTGCCTGTGTTGCCTCCACGCTTGCCTGGGACCGAGGCTATGGAACCTTAATAGG
AGGTGGTATGGGCTACCCTTATGCCGGCAGTGGCTTTGGTGGCTATGGAAGTAGCTATGGCTAT
GGTTATGGCTACGGTTATGGCTATGGAGGGGGCTATACAGATCCACGAGCAGCAAAGGGATTCT
TCCTGGCCATGGCTGCCTTCTGCTTCATTGCTGCATTGGTGATATTTGTGACCAGCGTTATAAG
ATCTGAAATATCTAGAACAAGAAGGTATTATTTGACTGTGATAATAATGAGTGCTATCCTGGGT
GTGATGGTGTTCATTGCCACGATTGTCTACATAATGGGCGTCAACCCAACAGCCCAGGCGTCAG
GGTCTCTCTACAGCTCACAAATCTATGCCCTCTGCAACCAGTTTTATACGACTGCGGTGACTGG
ACTCTACGTGGATCAATATTTATATCACTACTGCGTGGTGGATCCCCAGGAGGCCATTGCCATT
GTACTAGGGTTCATGGTTATTGTGGCTTTTGCCTTAATGATTTTCTTTGCTGTGAAAACTCGAA
GCAAGATGTACCACTATGACAAGTCGAATATTTTGTGGGACAAGGAACGTATTTATGACGAGCA
GCCCCCCAATGTTGAAGAGTGGGTTAAAAACGTGTCGGCAGGCACCCAAGACATGCCTCCTCCC
CTTTCGGACTATGCGGAGAGAGTGGACAGCCCCATGGCCTACTCGTCCAACGGGAAAGTGAACG
AGAAGCGGCCATATCCAGAGTCTTCGTATAAATCAACACCGGTGCCGGAAGTGGTTCAGGAACT
TCCACTGATGTCCCCCGTGGAGGACCTCAGGCAGCCTCATTACAGCAGCAGTGGTAACTTGGAG
GCGTCTTCAAAACGGGCTCCCGCAAAGGGCAGAGCAGGAAAGTCTAGGAGATCAGAGCAAGACC
ATTACGAGACAGACTACACGACGGGCGGCGAGTCCTGCGACGAGCTGGAGGAAGACTGGATCAG
GGAATATCCACCCATCACTTCAGATCAACAAAGGCAACTCTACAAGAGAAATTTTGACAGTGGC
CTGCAGGAGTACAAGAGCTTACAAGCAGAACTTGATGAGATCAATAAAGAGCTCTCTCGACTGG
ATAAAGAGCTGGATGATTATAGAGAAGAAAGTGAAGAGTACATGGCTGCTGCTGATGAATACAA
TAGACTGAAGCAAGTTAAGGGATCTGCGGATTACAAAAGTAAGAGGAATTATTGCAAGCAGTTG
AAGAGCAAATTGTCACACATCAAGAAGATGGTTGGAGATTATGATCGAAGGAAAACATAGGAGA
CAGAGGCCACCTTGTTTGAGAGATTAAGAAGTATCTGATCTGACATCTCTGCAGTGTTGTCAGG
AGTCAAAATGACACTGGACTCTGACCCAGGAGGCCAAACCTTTCTGGTCATTACGGAGATTTGG
TAGCTTTAATATCATCAGTATTGAAGCATTTTATAAATAGCTTTTGATAATCAACTGGTCTGAA
CACTCCAAGGAAGGATTTTTGTTTGTCTATCTGTTTTGTTTGTTTTTTAGGGCTGCCCCCATGC
CATATGGAAGTTCCCAGGCTAGGGGTCTAAACTGAGCTACAGCTGCCGGCCTACGCCACAGCCA
CAGCAATGCCAGATCCTTCAACCCACTGAGCGGGGCCACGGATTGAACCTGCATCCTCATGGAT
GCTAGTCGGGTTCGTTTCCACTGAGCCACAAGGGGAACTCCAAAGAAAGGATTTTATGCTTTAA
ACATTGGTTCTTGTGTTAAGAACTCACTGTTGTTTAAAGTTTTTAAATCTTTAGGGACGGTCCG
GGAGTGAACTGTGAACTTTGACACTCTAGGCAATCAGGTCCTAATACCTAAAATGTACTCTTTG
GGTCTCCCAGAATTCGCCCTTCCGATAACTGTTCTCTCTCATCATTTCTCTTCAGATAAGGAAA
TTGGGCCCCTGCAATAAAGTCTCTGAAGTGAAACTGCTTGTTTTCTAGCTTGCAGTTTTGGTTA
AGTCTGTTTTATGACTGCATGGATAAAGTCCCTGGCCTTTTCATATTTCAGCTACTACAGATAG
TGCATTCCACCAGGCCTCCTATTAATTTTTTTTCTGTGTATAAATGCTTAAGAGGTTTGTATTT
CATGTTATCCTGGTAATAAAGATCACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_005672521 ⟹ XP_005672578

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	16	47,600,491 - 47,652,435 (+)	NCBI

Sequence:

show sequence

AGCTGAGCCGCGGGGCGAGCTGGCCGTCTGCACTGCGTCAGGTGCACCCTCCAGGTGAGCGCGC
TCCTTGGGTCTCGCCTTTCCAGGTGGGTCGGGCCAGGCTGCGGTGAGAAGATTGGCTGATCTCG
AGAGCTACGGGGCGTTGCCCATCCTGAAGATCAGGTGACCCGCTGACATCAGCCATGTCATCCA
GGCCTTTTGAAAGTCCACCTCCTTATAGGCCTGATGAATTCAAACCCAATCATTATGCACCCAG
CAACGACATATATGGTGGAGAGACGCCCATTCGACCAATGCTTTCTCAGCCAGCGTATTCTTTC
TACCCAGAAGATGAAATTCTCCACTTTTACAAATGGACCTCTCCTCCAGGAGTGATTCGGATTC
TGTCTATGCTCGTTATCGTGATGTGCATTGCTATCTTTGCCTGTGTTGCCTCCACGCTTGCCTG
GGACCGAGGCTATGGAACCTTAATAGGAGGTGGTATGGGCTACCCTTATGCCGGCAGTGGCTTT
GGTGGCTATGGAAGTAGCTATGGCTATGGTTATGGCTACGGTTATGGCTATGGAGGGGGCTATA
CAGATCCACGAGCAGCAAAGGGATTCTTCCTGGCCATGGCTGCCTTCTGCTTCATTGCTGCATT
GGTGATATTTGTGACCAGCGTTATAAGATCTGAAATATCTAGAACAAGAAGGTATTATTTGACT
GTGATAATAATGAGTGCTATCCTGGGTGTGATGGTGTTCATTGCCACGATTGTCTACATAATGG
GCGTCAACCCAACAGCCCAGGCGTCAGGGTCTCTCTACAGCTCACAAATCTATGCCCTCTGCAA
CCAGTTTTATACGACTGCGGTGACTGGACTCTACGTGGATCAATATTTATATCACTACTGCGTG
GTGGATCCCCAGGAGGCCATTGCCATTGTACTAGGGTTCATGGTTATTGTGGCTTTTGCCTTAA
TGATTTTCTTTGCTGTGAAAACTCGAAGCAAGATGTACCACTATGACAAGTCGAATATTTTGTG
GGACAAGGAACGTATTTATGACGAGCAGCCCCCCAATGTTGAAGAGTGGGTTAAAAACGTGTCG
GCAGGCACCCAAGACATGCCTCCTCCCCTTTCGGACTATGCGGAGAGAGTGGACAGCCCCATGG
CCTACTCGTCCAACGGGAAAGTGAACGAGAAGCGGCCATATCCAGAGTCTTCGTATAAATCAAC
ACCGGTGCCGGAAGTGGTTCAGGAACTTCCACTGATGTCCCCCGTGGAGGACCTCAGGCAGCCT
CATTACAGCAGCAGTGGTAACTTGGAGGCGTCTTCAAAACGGGCTCCCGCAAAGGGCAGAGCAG
GAAAGTCTAGGAGATCAGAGCAAGACCATTACGAGACAGACTACACGACGGGCGGCGAGTCCTG
CGACGAGCTGGAGGAAGACTGGATCAGGGAATATCCACCCATCACTTCAGATCAACAAAGGCAA
CTCTACAAGAGAAATTTTGACAGTGGCCTGCAGGAGTACAAGAGCTTACAAGCAGAACTTGATG
AGATCAATAAAGAGCTCTCTCGACTGGATAAAGAGCTGGATGATTATAGAGAAGAAAGTGAAGA
GTACATGGCTGCTGCTGATGAATACAATAGACTGAAGCAAGTTAAGGGATCTGCGGATTACAAA
AGTAAGAGGAATTATTGCAAGCAGTTGAAGAGCAAATTGTCACACATCAAGAAGATGGTTGGAG
ATTATGATCGAAGGAAAACATAGGAGGCAGAGGCCACCTTGTTTGAGAGATTAAGAAGTATCTG
ATCTGACATCTCTGCAGTGTTGTCAGGAGTCAAAATGACACTGGACTCTGACCCAGGAGGCCAA
ACCTTTCTGGTCATTACGGAGATTTGGTAGCTTTAATATCATCAGTATTGAAGCATTTTATAAA
TAGCTTTTGATAATCAACTGGTCTGAACACTCCAAGGAAGGATTTTTGTTTGTCTATCTGTTTT
GTTTGTTTTTTAGGGCTGCCCCCATGCCATATGGAAGTTCCCAGGCTAGGGGTCTAAACTGAGC
TACAGCTGCCGGCCTACGCCACAGCCACAGCAATGCCAGATCCTTCAACCCACTGAGCGGGGCC
ACGGATTGAACCTGCATCCTCATGGATGCTAGTCGGGTTCGTTTCCACTGAGCCACAAGGGGAA
CTCCAAAGAAAGGATTTTATGCTTTAAACATTGGTTCTTGTGTTAAGAACTCACTGTTGTTTAA
AGTTTTTAAATCTTTAGGGACGGTCCGGGAGTGAACTGTGAACTTTGACACTCTAGGCAATCAG
GTCCTAATACCTAAAATGTACTCTTTGGGTCTCCCAGAATTCGCCCTTCCGATAACTGTTCTCT
CTCATCATTTCTCTTCAGATAAGGAAATTGGGCCCCTGCAATAAAGTCTCTGAAGTGAAACTGC
TTGTTTTCTAGCTTGCAGTTTTGGTTAAGTCTGTTTTATGACTGCATGGATAAAGTCCCTGGCC
TTTTCATATTTCAGCTACTACAGATAGTGCATTCCACCAGGCCTCCTATTAATTTTTTTTCTGT
GTATAAATGCTTAAGAGGTTTGTATTTCATGTTATCCTGGTAATAAAGATCACGTAAAAGTAAC
AGATGTGTGAAATTTGAAGATTGTAAATACATGTTTACTTTTTTAAAAATCAAAGTTGAAACCT
ACTGGTTAGAATTTTGTTGTGTATTTTTAAATGCTTTTTATCTTTTATGGTTTACATACTTCTT
TTTAAACCAGCTAGGCTGTTTCATTATATCAAAGTATCCAATTACATTTATAATTCAATTGTGA
CTTGAATTGTATCTTTGGGGAATGTTGGAGCTTTGTACATATTTTATAATTATTAAACCTGGTG
TTTCCTTTCCATAATATACATTTTTGACATCACTAGTCCTGTGGAAAACTGGAAAACTAAGCTA
TGGGAAACTACACTCAGGAGTTTTATCTGTTATTGTTTTAAACTACTTTGGGTGCTGTGCTAGT
TGGTAGTTTCCTAAGTCCTTTGACTGATTTGTCAGGAAACAGAATGCAAGACCCTAAAATGCCA
AATTATTTCAAGTGGTGCTTTTAAATCTCGAAAGTTTTTTGTTTTTAATTCAGATGTTTCCTGG
TAATGTAAAATTAGCTGATAATCCTGGACATATAGCCCACCAAGTTGGTTGTGATGATCTCCTC
AGTTTAGAACTCTTCTTTCCTTTTTTTTTTTTTTAAGGGCTATGCCCGTGGCATATGGAAGTTC
CCAGGTTAGGGGTCGAATTGGAGCTACGGCTGCTGGCCTACACCACAGCTACAGCAACTTGGGA
TCCAAGCCGTGTCTGCAACCTACCCCACAGTTCACAGCAACGCCGGATCCTTAACCCACTGAGT
GAGGCCAAGGATCGAACCTGCATCCTCATGGATGCTAGTCAAATTTGTTTCCGCTGAGCAGGAA
CTCCTAGAATTCTTTCTGAAAAAATGTTAAAGAATAATTTCAAATTTATCATTACTATACAATT
TGGACATTTAAGTCTATAGATTTTAATATAGAAGTCTGAATCGTTTTCCAAAGATAAACTTTTA
AATAAGGTTTCCATTATAACAGATTTATTTCTTCAAGTTGAAGAAATTTTTTGTTTTCTATGTG
CCGCATATACTATAGAAAGTAATAAATAGTTTATGCTTTTTATGACTTTTGGATTCATACTAAA
TGGTAAGGACTCTTGAGCAACTGAATTTTTCTGTGTTAAAATTTAAACTCTTTATTCTTGGAAA
TCAGCGTACTTTGTTTATGAAGACAAGTTTGCCAGCGTTGTGACAAAACAAAACCATTCAGCAG
AATGCAGAAAATTAAATAGGACGAGTTTGCATTGTAAAATTGTGCCATAAAATTAGACTTTGAA
AGTTTTTTAAAAAATCATTTTTCAAATGTGATATTTAACTCCAAAGACCGCTTCAGGAGCCAGG
ATCAGGATGTTTTTGTTGGAGTTGGCATTAACTAATGAAATATAACTTTGAAAAACCACTCGGG
CTATGTTCTCACCTGGAAAATAGAGGTTTAGATCGATTTCAGAGGTCTTTTACATCTCTGACCT
TCTTTGGTTATGTTTGCATAATACTTCCTGCTCTAAACCACTATTCCAAAGATTCTGTTGAAAA
TGCATGTGGTTCATTTGCTGAAGACTCACAGCATGAAGTGATTTCCTTACATGTGTATTAAACA
TAGATAACATCAATACTTTCATTTCTCTTTATCTTGGAAAGTTTAAAAAAATACAGAAAAATAG
GAACTTGTAAACCTACCACCCAGAAAGAACAAGTGTTGATATTTTGTCATATATACTTTGTATT
TTTGGAAATAAATTTAAGTCTGTAAGTA

hide sequence

RefSeq Acc Id:

XM_005672522 ⟹ XP_005672579

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	16	47,600,175 - 47,652,435 (+)	NCBI

Sequence:

show sequence

CATCTGAGTTTCAGGTGGATGGATCACGGTGGGAGGAGGCCACCACACCACTCCTCCTCGCCCG
TGTCCACCACCCCCTTTCTCCTTCCTCTGGTTGGGGCGGCGGGACTCCGGGGAGAGCTAGACAG
AGCGCCGCAGAGCCCTCGCGGGGTGCAGCAGATTGGCTGATCTCGAGAGCTACGGGGCGTTGCC
CATCCTGAAGATCAGGTGACCCGCTGACATCAGCCATGTCATCCAGGCCTTTTGAAAGTCCACC
TCCTTATAGGCCTGATGAATTCAAACCCAATCATTATGCACCCAGCAACGACATATATGGTGGA
GAGACGCCCATTCGACCAATGCTTTCTCAGCCAGCGTATTCTTTCTACCCAGAAGATGAAATTC
TCCACTTTTACAAATGGACCTCTCCTCCAGGAGTGATTCGGATTCTGTCTATGCTCGTTATCGT
GATGTGCATTGCTATCTTTGCCTGTGTTGCCTCCACGCTTGCCTGGGACCGAGGCTATGGAACC
TTAATAGGAGGTGGTATGGGCTACCCTTATGCCGGCAGTGGCTTTGGTGGCTATGGAAGTAGCT
ATGGCTATGGTTATGGCTACGGTTATGGCTATGGAGGGGGCTATACAGATCCACGAGCAGCAAA
GGGATTCTTCCTGGCCATGGCTGCCTTCTGCTTCATTGCTGCATTGGTGATATTTGTGACCAGC
GTTATAAGATCTGAAATATCTAGAACAAGAAGGTATTATTTGACTGTGATAATAATGAGTGCTA
TCCTGGGTGTGATGGTGTTCATTGCCACGATTGTCTACATAATGGGCGTCAACCCAACAGCCCA
GGCGTCAGGGTCTCTCTACAGCTCACAAATCTATGCCCTCTGCAACCAGTTTTATACGACTGCG
GTGACTGGACTCTACGTGGATCAATATTTATATCACTACTGCGTGGTGGATCCCCAGGAGGCCA
TTGCCATTGTACTAGGGTTCATGGTTATTGTGGCTTTTGCCTTAATGATTTTCTTTGCTGTGAA
AACTCGAAGCAAGATGTACCACTATGACAAGTCGAATATTTTGTGGGACAAGGAACGTATTTAT
GACGAGCAGCCCCCCAATGTTGAAGAGTGGGTTAAAAACGTGTCGGCAGGCACCCAAGACATGC
CTCCTCCCCTTTCGGACTATGCGGAGAGAGTGGACAGCCCCATGGCCTACTCGTCCAACGGGAA
AGTGAACGAGAAGCGGCCATATCCAGAGTCTTCGTATAAATCAACACCGGTGCCGGAAGTGGTT
CAGGAACTTCCACTGATGTCCCCCGTGGAGGACCTCAGGCAGCCTCATTACAGCAGCAGTGGTA
ACTTGGAGGCGTCTTCAAAACGGGCTCCCGCAAAGGGCAGAGCAGGAAAGTCTAGGAGATCAGA
GCAAGACCATTACGAGACAGACTACACGACGGGCGGCGAGTCCTGCGACGAGCTGGAGGAAGAC
TGGATCAGGGAATATCCACCCATCACTTCAGATCAACAAAGGCAACTCTACAAGAGAAATTTTG
ACAGTGGCCTGCAGGAGTACAAGAGCTTACAAGCAGAACTTGATGAGATCAATAAAGAGCTCTC
TCGACTGGATAAAGAGCTGGATGATTATAGAGAAGAAAGTGAAGAGTACATGGCTGCTGCTGAT
GAATACAATAGACTGAAGCAAGTTAAGGGATCTGCGGATTACAAAAGTAAGAGGAATTATTGCA
AGCAGTTGAAGAGCAAATTGTCACACATCAAGAAGATGGTTGGAGATTATGATCGAAGGAAAAC
ATAGGAGGCAGAGGCCACCTTGTTTGAGAGATTAAGAAGTATCTGATCTGACATCTCTGCAGTG
TTGTCAGGAGTCAAAATGACACTGGACTCTGACCCAGGAGGCCAAACCTTTCTGGTCATTACGG
AGATTTGGTAGCTTTAATATCATCAGTATTGAAGCATTTTATAAATAGCTTTTGATAATCAACT
GGTCTGAACACTCCAAGGAAGGATTTTTGTTTGTCTATCTGTTTTGTTTGTTTTTTAGGGCTGC
CCCCATGCCATATGGAAGTTCCCAGGCTAGGGGTCTAAACTGAGCTACAGCTGCCGGCCTACGC
CACAGCCACAGCAATGCCAGATCCTTCAACCCACTGAGCGGGGCCACGGATTGAACCTGCATCC
TCATGGATGCTAGTCGGGTTCGTTTCCACTGAGCCACAAGGGGAACTCCAAAGAAAGGATTTTA
TGCTTTAAACATTGGTTCTTGTGTTAAGAACTCACTGTTGTTTAAAGTTTTTAAATCTTTAGGG
ACGGTCCGGGAGTGAACTGTGAACTTTGACACTCTAGGCAATCAGGTCCTAATACCTAAAATGT
ACTCTTTGGGTCTCCCAGAATTCGCCCTTCCGATAACTGTTCTCTCTCATCATTTCTCTTCAGA
TAAGGAAATTGGGCCCCTGCAATAAAGTCTCTGAAGTGAAACTGCTTGTTTTCTAGCTTGCAGT
TTTGGTTAAGTCTGTTTTATGACTGCATGGATAAAGTCCCTGGCCTTTTCATATTTCAGCTACT
ACAGATAGTGCATTCCACCAGGCCTCCTATTAATTTTTTTTCTGTGTATAAATGCTTAAGAGGT
TTGTATTTCATGTTATCCTGGTAATAAAGATCACGTAAAAGTAACAGATGTGTGAAATTTGAAG
ATTGTAAATACATGTTTACTTTTTTAAAAATCAAAGTTGAAACCTACTGGTTAGAATTTTGTTG
TGTATTTTTAAATGCTTTTTATCTTTTATGGTTTACATACTTCTTTTTAAACCAGCTAGGCTGT
TTCATTATATCAAAGTATCCAATTACATTTATAATTCAATTGTGACTTGAATTGTATCTTTGGG
GAATGTTGGAGCTTTGTACATATTTTATAATTATTAAACCTGGTGTTTCCTTTCCATAATATAC
ATTTTTGACATCACTAGTCCTGTGGAAAACTGGAAAACTAAGCTATGGGAAACTACACTCAGGA
GTTTTATCTGTTATTGTTTTAAACTACTTTGGGTGCTGTGCTAGTTGGTAGTTTCCTAAGTCCT
TTGACTGATTTGTCAGGAAACAGAATGCAAGACCCTAAAATGCCAAATTATTTCAAGTGGTGCT
TTTAAATCTCGAAAGTTTTTTGTTTTTAATTCAGATGTTTCCTGGTAATGTAAAATTAGCTGAT
AATCCTGGACATATAGCCCACCAAGTTGGTTGTGATGATCTCCTCAGTTTAGAACTCTTCTTTC
CTTTTTTTTTTTTTTAAGGGCTATGCCCGTGGCATATGGAAGTTCCCAGGTTAGGGGTCGAATT
GGAGCTACGGCTGCTGGCCTACACCACAGCTACAGCAACTTGGGATCCAAGCCGTGTCTGCAAC
CTACCCCACAGTTCACAGCAACGCCGGATCCTTAACCCACTGAGTGAGGCCAAGGATCGAACCT
GCATCCTCATGGATGCTAGTCAAATTTGTTTCCGCTGAGCAGGAACTCCTAGAATTCTTTCTGA
AAAAATGTTAAAGAATAATTTCAAATTTATCATTACTATACAATTTGGACATTTAAGTCTATAG
ATTTTAATATAGAAGTCTGAATCGTTTTCCAAAGATAAACTTTTAAATAAGGTTTCCATTATAA
CAGATTTATTTCTTCAAGTTGAAGAAATTTTTTGTTTTCTATGTGCCGCATATACTATAGAAAG
TAATAAATAGTTTATGCTTTTTATGACTTTTGGATTCATACTAAATGGTAAGGACTCTTGAGCA
ACTGAATTTTTCTGTGTTAAAATTTAAACTCTTTATTCTTGGAAATCAGCGTACTTTGTTTATG
AAGACAAGTTTGCCAGCGTTGTGACAAAACAAAACCATTCAGCAGAATGCAGAAAATTAAATAG
GACGAGTTTGCATTGTAAAATTGTGCCATAAAATTAGACTTTGAAAGTTTTTTAAAAAATCATT
TTTCAAATGTGATATTTAACTCCAAAGACCGCTTCAGGAGCCAGGATCAGGATGTTTTTGTTGG
AGTTGGCATTAACTAATGAAATATAACTTTGAAAAACCACTCGGGCTATGTTCTCACCTGGAAA
ATAGAGGTTTAGATCGATTTCAGAGGTCTTTTACATCTCTGACCTTCTTTGGTTATGTTTGCAT
AATACTTCCTGCTCTAAACCACTATTCCAAAGATTCTGTTGAAAATGCATGTGGTTCATTTGCT
GAAGACTCACAGCATGAAGTGATTTCCTTACATGTGTATTAAACATAGATAACATCAATACTTT
CATTTCTCTTTATCTTGGAAAGTTTAAAAAAATACAGAAAAATAGGAACTTGTAAACCTACCAC
CCAGAAAGAACAAGTGTTGATATTTTGTCATATATACTTTGTATTTTTGGAAATAAATTTAAGT
CTGTAAGTA

hide sequence

RefSeq Acc Id:

XM_005672523 ⟹ XP_005672580

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	16	47,600,599 - 47,652,435 (+)	NCBI

Sequence:

show sequence

GAGAAGGTGAGAGTTGGGCGCCGCGCCCAGGGCGCACGAGGGGCCCTTCTGTCTGGTAGGAGCG
GCGCGGGGGGAGGAAGCCCGCGCTGGTTTCGGTGGCGGTTTCGTCCCTGGGCTGGGACTCGCGG
GAAGCGAAAAGGCGCGGGTCGTCCGAGGGAGCCGCGCGGGGCGAACTTGAGAGGCTGCCTCCCG
AGCGGGGGTGCGCTTGGAGACGCCCATCAACTTCTGCCGCGGAAACGCTTGAAGCCACCGGTGT
CTAGGCGGTGGGGGCAACCTTTCGGTTACATGGGGGCTGGCGGGAAGTTAAGTGAACAGCGAGG
ATCCTGCGCCCAGCTCTCCGAGATTGGCTGATCTCGAGAGCTACGGGGCGTTGCCCATCCTGAA
GATCAGGTGACCCGCTGACATCAGCCATGTCATCCAGGCCTTTTGAAAGTCCACCTCCTTATAG
GCCTGATGAATTCAAACCCAATCATTATGCACCCAGCAACGACATATATGGTGGAGAGACGCCC
ATTCGACCAATGCTTTCTCAGCCAGCGTATTCTTTCTACCCAGAAGATGAAATTCTCCACTTTT
ACAAATGGACCTCTCCTCCAGGAGTGATTCGGATTCTGTCTATGCTCGTTATCGTGATGTGCAT
TGCTATCTTTGCCTGTGTTGCCTCCACGCTTGCCTGGGACCGAGGCTATGGAACCTTAATAGGA
GGTGGTATGGGCTACCCTTATGCCGGCAGTGGCTTTGGTGGCTATGGAAGTAGCTATGGCTATG
GTTATGGCTACGGTTATGGCTATGGAGGGGGCTATACAGATCCACGAGCAGCAAAGGGATTCTT
CCTGGCCATGGCTGCCTTCTGCTTCATTGCTGCATTGGTGATATTTGTGACCAGCGTTATAAGA
TCTGAAATATCTAGAACAAGAAGGTATTATTTGACTGTGATAATAATGAGTGCTATCCTGGGTG
TGATGGTGTTCATTGCCACGATTGTCTACATAATGGGCGTCAACCCAACAGCCCAGGCGTCAGG
GTCTCTCTACAGCTCACAAATCTATGCCCTCTGCAACCAGTTTTATACGACTGCGGTGACTGGA
CTCTACGTGGATCAATATTTATATCACTACTGCGTGGTGGATCCCCAGGAGGCCATTGCCATTG
TACTAGGGTTCATGGTTATTGTGGCTTTTGCCTTAATGATTTTCTTTGCTGTGAAAACTCGAAG
CAAGATGTACCACTATGACAAGTCGAATATTTTGTGGGACAAGGAACGTATTTATGACGAGCAG
CCCCCCAATGTTGAAGAGTGGGTTAAAAACGTGTCGGCAGGCACCCAAGACATGCCTCCTCCCC
TTTCGGACTATGCGGAGAGAGTGGACAGCCCCATGGCCTACTCGTCCAACGGGAAAGTGAACGA
GAAGCGGCCATATCCAGAGTCTTCGTATAAATCAACACCGGTGCCGGAAGTGGTTCAGGAACTT
CCACTGATGTCCCCCGTGGAGGACCTCAGGCAGCCTCATTACAGCAGCAGTGGTAACTTGGAGG
CGTCTTCAAAACGGGCTCCCGCAAAGGGCAGAGCAGGAAAGTCTAGGAGATCAGAGCAAGACCA
TTACGAGACAGACTACACGACGGGCGGCGAGTCCTGCGACGAGCTGGAGGAAGACTGGATCAGG
GAATATCCACCCATCACTTCAGATCAACAAAGGCAACTCTACAAGAGAAATTTTGACAGTGGCC
TGCAGGAGTACAAGAGCTTACAAGCAGAACTTGATGAGATCAATAAAGAGCTCTCTCGACTGGA
TAAAGAGCTGGATGATTATAGAGAAGAAAGTGAAGAGTACATGGCTGCTGCTGATGAATACAAT
AGACTGAAGCAAGTTAAGGGATCTGCGGATTACAAAAGTAAGAGGAATTATTGCAAGCAGTTGA
AGAGCAAATTGTCACACATCAAGAAGATGGTTGGAGATTATGATCGAAGGAAAACATAGGAGGC
AGAGGCCACCTTGTTTGAGAGATTAAGAAGTATCTGATCTGACATCTCTGCAGTGTTGTCAGGA
GTCAAAATGACACTGGACTCTGACCCAGGAGGCCAAACCTTTCTGGTCATTACGGAGATTTGGT
AGCTTTAATATCATCAGTATTGAAGCATTTTATAAATAGCTTTTGATAATCAACTGGTCTGAAC
ACTCCAAGGAAGGATTTTTGTTTGTCTATCTGTTTTGTTTGTTTTTTAGGGCTGCCCCCATGCC
ATATGGAAGTTCCCAGGCTAGGGGTCTAAACTGAGCTACAGCTGCCGGCCTACGCCACAGCCAC
AGCAATGCCAGATCCTTCAACCCACTGAGCGGGGCCACGGATTGAACCTGCATCCTCATGGATG
CTAGTCGGGTTCGTTTCCACTGAGCCACAAGGGGAACTCCAAAGAAAGGATTTTATGCTTTAAA
CATTGGTTCTTGTGTTAAGAACTCACTGTTGTTTAAAGTTTTTAAATCTTTAGGGACGGTCCGG
GAGTGAACTGTGAACTTTGACACTCTAGGCAATCAGGTCCTAATACCTAAAATGTACTCTTTGG
GTCTCCCAGAATTCGCCCTTCCGATAACTGTTCTCTCTCATCATTTCTCTTCAGATAAGGAAAT
TGGGCCCCTGCAATAAAGTCTCTGAAGTGAAACTGCTTGTTTTCTAGCTTGCAGTTTTGGTTAA
GTCTGTTTTATGACTGCATGGATAAAGTCCCTGGCCTTTTCATATTTCAGCTACTACAGATAGT
GCATTCCACCAGGCCTCCTATTAATTTTTTTTCTGTGTATAAATGCTTAAGAGGTTTGTATTTC
ATGTTATCCTGGTAATAAAGATCACGTAAAAGTAACAGATGTGTGAAATTTGAAGATTGTAAAT
ACATGTTTACTTTTTTAAAAATCAAAGTTGAAACCTACTGGTTAGAATTTTGTTGTGTATTTTT
AAATGCTTTTTATCTTTTATGGTTTACATACTTCTTTTTAAACCAGCTAGGCTGTTTCATTATA
TCAAAGTATCCAATTACATTTATAATTCAATTGTGACTTGAATTGTATCTTTGGGGAATGTTGG
AGCTTTGTACATATTTTATAATTATTAAACCTGGTGTTTCCTTTCCATAATATACATTTTTGAC
ATCACTAGTCCTGTGGAAAACTGGAAAACTAAGCTATGGGAAACTACACTCAGGAGTTTTATCT
GTTATTGTTTTAAACTACTTTGGGTGCTGTGCTAGTTGGTAGTTTCCTAAGTCCTTTGACTGAT
TTGTCAGGAAACAGAATGCAAGACCCTAAAATGCCAAATTATTTCAAGTGGTGCTTTTAAATCT
CGAAAGTTTTTTGTTTTTAATTCAGATGTTTCCTGGTAATGTAAAATTAGCTGATAATCCTGGA
CATATAGCCCACCAAGTTGGTTGTGATGATCTCCTCAGTTTAGAACTCTTCTTTCCTTTTTTTT
TTTTTTAAGGGCTATGCCCGTGGCATATGGAAGTTCCCAGGTTAGGGGTCGAATTGGAGCTACG
GCTGCTGGCCTACACCACAGCTACAGCAACTTGGGATCCAAGCCGTGTCTGCAACCTACCCCAC
AGTTCACAGCAACGCCGGATCCTTAACCCACTGAGTGAGGCCAAGGATCGAACCTGCATCCTCA
TGGATGCTAGTCAAATTTGTTTCCGCTGAGCAGGAACTCCTAGAATTCTTTCTGAAAAAATGTT
AAAGAATAATTTCAAATTTATCATTACTATACAATTTGGACATTTAAGTCTATAGATTTTAATA
TAGAAGTCTGAATCGTTTTCCAAAGATAAACTTTTAAATAAGGTTTCCATTATAACAGATTTAT
TTCTTCAAGTTGAAGAAATTTTTTGTTTTCTATGTGCCGCATATACTATAGAAAGTAATAAATA
GTTTATGCTTTTTATGACTTTTGGATTCATACTAAATGGTAAGGACTCTTGAGCAACTGAATTT
TTCTGTGTTAAAATTTAAACTCTTTATTCTTGGAAATCAGCGTACTTTGTTTATGAAGACAAGT
TTGCCAGCGTTGTGACAAAACAAAACCATTCAGCAGAATGCAGAAAATTAAATAGGACGAGTTT
GCATTGTAAAATTGTGCCATAAAATTAGACTTTGAAAGTTTTTTAAAAAATCATTTTTCAAATG
TGATATTTAACTCCAAAGACCGCTTCAGGAGCCAGGATCAGGATGTTTTTGTTGGAGTTGGCAT
TAACTAATGAAATATAACTTTGAAAAACCACTCGGGCTATGTTCTCACCTGGAAAATAGAGGTT
TAGATCGATTTCAGAGGTCTTTTACATCTCTGACCTTCTTTGGTTATGTTTGCATAATACTTCC
TGCTCTAAACCACTATTCCAAAGATTCTGTTGAAAATGCATGTGGTTCATTTGCTGAAGACTCA
CAGCATGAAGTGATTTCCTTACATGTGTATTAAACATAGATAACATCAATACTTTCATTTCTCT
TTATCTTGGAAAGTTTAAAAAAATACAGAAAAATAGGAACTTGTAAACCTACCACCCAGAAAGA
ACAAGTGTTGATATTTTGTCATATATACTTTGTATTTTTGGAAATAAATTTAAGTCTGTAAGTA

hide sequence

RefSeq Acc Id:

XM_005672524 ⟹ XP_005672581

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	16	47,600,504 - 47,652,435 (+)	NCBI

Sequence:

show sequence

GGCGAGCTGGCCGTCTGCACTGCGTCAGGTGCACCCTCCAGGTGAGCGCGCTCCTTGGGTCTCG
CCTTTCCAGATTGGCTGATCTCGAGAGCTACGGGGCGTTGCCCATCCTGAAGATCAGGTGACCC
GCTGACATCAGCCATGTCATCCAGGCCTTTTGAAAGTCCACCTCCTTATAGGCCTGATGAATTC
AAACCCAATCATTATGCACCCAGCAACGACATATATGGTGGAGAGACGCCCATTCGACCAATGC
TTTCTCAGCCAGCGTATTCTTTCTACCCAGAAGATGAAATTCTCCACTTTTACAAATGGACCTC
TCCTCCAGGAGTGATTCGGATTCTGTCTATGCTCGTTATCGTGATGTGCATTGCTATCTTTGCC
TGTGTTGCCTCCACGCTTGCCTGGGACCGAGGCTATGGAACCTTAATAGGAGGTGGTATGGGCT
ACCCTTATGCCGGCAGTGGCTTTGGTGGCTATGGAAGTAGCTATGGCTATGGTTATGGCTACGG
TTATGGCTATGGAGGGGGCTATACAGATCCACGAGCAGCAAAGGGATTCTTCCTGGCCATGGCT
GCCTTCTGCTTCATTGCTGCATTGGTGATATTTGTGACCAGCGTTATAAGATCTGAAATATCTA
GAACAAGAAGGTATTATTTGACTGTGATAATAATGAGTGCTATCCTGGGTGTGATGGTGTTCAT
TGCCACGATTGTCTACATAATGGGCGTCAACCCAACAGCCCAGGCGTCAGGGTCTCTCTACAGC
TCACAAATCTATGCCCTCTGCAACCAGTTTTATACGACTGCGGTGACTGGACTCTACGTGGATC
AATATTTATATCACTACTGCGTGGTGGATCCCCAGGAGGCCATTGCCATTGTACTAGGGTTCAT
GGTTATTGTGGCTTTTGCCTTAATGATTTTCTTTGCTGTGAAAACTCGAAGCAAGATGTACCAC
TATGACAAGTCGAATATTTTGTGGGACAAGGAACGTATTTATGACGAGCAGCCCCCCAATGTTG
AAGAGTGGGTTAAAAACGTGTCGGCAGGCACCCAAGACATGCCTCCTCCCCTTTCGGACTATGC
GGAGAGAGTGGACAGCCCCATGGCCTACTCGTCCAACGGGAAAGTGAACGAGAAGCGGCCATAT
CCAGAGTCTTCGTATAAATCAACACCGGTGCCGGAAGTGGTTCAGGAACTTCCACTGATGTCCC
CCGTGGAGGACCTCAGGCAGCCTCATTACAGCAGCAGTGGTAACTTGGAGGCGTCTTCAAAACG
GGCTCCCGCAAAGGGCAGAGCAGGAAAGTCTAGGAGATCAGAGCAAGACCATTACGAGACAGAC
TACACGACGGGCGGCGAGTCCTGCGACGAGCTGGAGGAAGACTGGATCAGGGAATATCCACCCA
TCACTTCAGATCAACAAAGGCAACTCTACAAGAGAAATTTTGACAGTGGCCTGCAGGAGTACAA
GAGCTTACAAGCAGAACTTGATGAGATCAATAAAGAGCTCTCTCGACTGGATAAAGAGCTGGAT
GATTATAGAGAAGAAAGTGAAGAGTACATGGCTGCTGCTGATGAATACAATAGACTGAAGCAAG
TTAAGGGATCTGCGGATTACAAAAGTAAGAGGAATTATTGCAAGCAGTTGAAGAGCAAATTGTC
ACACATCAAGAAGATGGTTGGAGATTATGATCGAAGGAAAACATAGGAGGCAGAGGCCACCTTG
TTTGAGAGATTAAGAAGTATCTGATCTGACATCTCTGCAGTGTTGTCAGGAGTCAAAATGACAC
TGGACTCTGACCCAGGAGGCCAAACCTTTCTGGTCATTACGGAGATTTGGTAGCTTTAATATCA
TCAGTATTGAAGCATTTTATAAATAGCTTTTGATAATCAACTGGTCTGAACACTCCAAGGAAGG
ATTTTTGTTTGTCTATCTGTTTTGTTTGTTTTTTAGGGCTGCCCCCATGCCATATGGAAGTTCC
CAGGCTAGGGGTCTAAACTGAGCTACAGCTGCCGGCCTACGCCACAGCCACAGCAATGCCAGAT
CCTTCAACCCACTGAGCGGGGCCACGGATTGAACCTGCATCCTCATGGATGCTAGTCGGGTTCG
TTTCCACTGAGCCACAAGGGGAACTCCAAAGAAAGGATTTTATGCTTTAAACATTGGTTCTTGT
GTTAAGAACTCACTGTTGTTTAAAGTTTTTAAATCTTTAGGGACGGTCCGGGAGTGAACTGTGA
ACTTTGACACTCTAGGCAATCAGGTCCTAATACCTAAAATGTACTCTTTGGGTCTCCCAGAATT
CGCCCTTCCGATAACTGTTCTCTCTCATCATTTCTCTTCAGATAAGGAAATTGGGCCCCTGCAA
TAAAGTCTCTGAAGTGAAACTGCTTGTTTTCTAGCTTGCAGTTTTGGTTAAGTCTGTTTTATGA
CTGCATGGATAAAGTCCCTGGCCTTTTCATATTTCAGCTACTACAGATAGTGCATTCCACCAGG
CCTCCTATTAATTTTTTTTCTGTGTATAAATGCTTAAGAGGTTTGTATTTCATGTTATCCTGGT
AATAAAGATCACGTAAAAGTAACAGATGTGTGAAATTTGAAGATTGTAAATACATGTTTACTTT
TTTAAAAATCAAAGTTGAAACCTACTGGTTAGAATTTTGTTGTGTATTTTTAAATGCTTTTTAT
CTTTTATGGTTTACATACTTCTTTTTAAACCAGCTAGGCTGTTTCATTATATCAAAGTATCCAA
TTACATTTATAATTCAATTGTGACTTGAATTGTATCTTTGGGGAATGTTGGAGCTTTGTACATA
TTTTATAATTATTAAACCTGGTGTTTCCTTTCCATAATATACATTTTTGACATCACTAGTCCTG
TGGAAAACTGGAAAACTAAGCTATGGGAAACTACACTCAGGAGTTTTATCTGTTATTGTTTTAA
ACTACTTTGGGTGCTGTGCTAGTTGGTAGTTTCCTAAGTCCTTTGACTGATTTGTCAGGAAACA
GAATGCAAGACCCTAAAATGCCAAATTATTTCAAGTGGTGCTTTTAAATCTCGAAAGTTTTTTG
TTTTTAATTCAGATGTTTCCTGGTAATGTAAAATTAGCTGATAATCCTGGACATATAGCCCACC
AAGTTGGTTGTGATGATCTCCTCAGTTTAGAACTCTTCTTTCCTTTTTTTTTTTTTTAAGGGCT
ATGCCCGTGGCATATGGAAGTTCCCAGGTTAGGGGTCGAATTGGAGCTACGGCTGCTGGCCTAC
ACCACAGCTACAGCAACTTGGGATCCAAGCCGTGTCTGCAACCTACCCCACAGTTCACAGCAAC
GCCGGATCCTTAACCCACTGAGTGAGGCCAAGGATCGAACCTGCATCCTCATGGATGCTAGTCA
AATTTGTTTCCGCTGAGCAGGAACTCCTAGAATTCTTTCTGAAAAAATGTTAAAGAATAATTTC
AAATTTATCATTACTATACAATTTGGACATTTAAGTCTATAGATTTTAATATAGAAGTCTGAAT
CGTTTTCCAAAGATAAACTTTTAAATAAGGTTTCCATTATAACAGATTTATTTCTTCAAGTTGA
AGAAATTTTTTGTTTTCTATGTGCCGCATATACTATAGAAAGTAATAAATAGTTTATGCTTTTT
ATGACTTTTGGATTCATACTAAATGGTAAGGACTCTTGAGCAACTGAATTTTTCTGTGTTAAAA
TTTAAACTCTTTATTCTTGGAAATCAGCGTACTTTGTTTATGAAGACAAGTTTGCCAGCGTTGT
GACAAAACAAAACCATTCAGCAGAATGCAGAAAATTAAATAGGACGAGTTTGCATTGTAAAATT
GTGCCATAAAATTAGACTTTGAAAGTTTTTTAAAAAATCATTTTTCAAATGTGATATTTAACTC
CAAAGACCGCTTCAGGAGCCAGGATCAGGATGTTTTTGTTGGAGTTGGCATTAACTAATGAAAT
ATAACTTTGAAAAACCACTCGGGCTATGTTCTCACCTGGAAAATAGAGGTTTAGATCGATTTCA
GAGGTCTTTTACATCTCTGACCTTCTTTGGTTATGTTTGCATAATACTTCCTGCTCTAAACCAC
TATTCCAAAGATTCTGTTGAAAATGCATGTGGTTCATTTGCTGAAGACTCACAGCATGAAGTGA
TTTCCTTACATGTGTATTAAACATAGATAACATCAATACTTTCATTTCTCTTTATCTTGGAAAG
TTTAAAAAAATACAGAAAAATAGGAACTTGTAAACCTACCACCCAGAAAGAACAAGTGTTGATA
TTTTGTCATATATACTTTGTATTTTTGGAAATAAATTTAAGTCTGTAAGTA

hide sequence

RefSeq Acc Id:

XM_005672525 ⟹ XP_005672582

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	16	47,601,367 - 47,652,435 (+)	NCBI

Sequence:

show sequence

CCGGGGCGCTCTGGAAGTGGCGGGGGTGCATGACCTCCGGGACCTGGCCCCGGCCGGCCGGCCG
CGCGCTCCTGCGACCCGGGGAAGGGCCGGCCCGGCGCGCAGCGGACATGTTGCCTGTGTCGGAC
CAAGTGTGTGAGGCCAGATTGGCTGATCTCGAGAGCTACGGGGCGTTGCCCATCCTGAAGATCA
GGTGACCCGCTGACATCAGCCATGTCATCCAGGCCTTTTGAAAGTCCACCTCCTTATAGGCCTG
ATGAATTCAAACCCAATCATTATGCACCCAGCAACGACATATATGGTGGAGAGACGCCCATTCG
ACCAATGCTTTCTCAGCCAGCGTATTCTTTCTACCCAGAAGATGAAATTCTCCACTTTTACAAA
TGGACCTCTCCTCCAGGAGTGATTCGGATTCTGTCTATGCTCGTTATCGTGATGTGCATTGCTA
TCTTTGCCTGTGTTGCCTCCACGCTTGCCTGGGACCGAGGCTATGGAACCTTAATAGGAGGTGG
TATGGGCTACCCTTATGCCGGCAGTGGCTTTGGTGGCTATGGAAGTAGCTATGGCTATGGTTAT
GGCTACGGTTATGGCTATGGAGGGGGCTATACAGATCCACGAGCAGCAAAGGGATTCTTCCTGG
CCATGGCTGCCTTCTGCTTCATTGCTGCATTGGTGATATTTGTGACCAGCGTTATAAGATCTGA
AATATCTAGAACAAGAAGGTATTATTTGACTGTGATAATAATGAGTGCTATCCTGGGTGTGATG
GTGTTCATTGCCACGATTGTCTACATAATGGGCGTCAACCCAACAGCCCAGGCGTCAGGGTCTC
TCTACAGCTCACAAATCTATGCCCTCTGCAACCAGTTTTATACGACTGCGGTGACTGGACTCTA
CGTGGATCAATATTTATATCACTACTGCGTGGTGGATCCCCAGGAGGCCATTGCCATTGTACTA
GGGTTCATGGTTATTGTGGCTTTTGCCTTAATGATTTTCTTTGCTGTGAAAACTCGAAGCAAGA
TGTACCACTATGACAAGTCGAATATTTTGTGGGACAAGGAACGTATTTATGACGAGCAGCCCCC
CAATGTTGAAGAGTGGGTTAAAAACGTGTCGGCAGGCACCCAAGACATGCCTCCTCCCCTTTCG
GACTATGCGGAGAGAGTGGACAGCCCCATGGCCTACTCGTCCAACGGGAAAGTGAACGAGAAGC
GGCCATATCCAGAGTCTTCGTATAAATCAACACCGGTGCCGGAAGTGGTTCAGGAACTTCCACT
GATGTCCCCCGTGGAGGACCTCAGGCAGCCTCATTACAGCAGCAGTGGTAACTTGGAGGCGTCT
TCAAAACGGGCTCCCGCAAAGGGCAGAGCAGGAAAGTCTAGGAGATCAGAGCAAGACCATTACG
AGACAGACTACACGACGGGCGGCGAGTCCTGCGACGAGCTGGAGGAAGACTGGATCAGGGAATA
TCCACCCATCACTTCAGATCAACAAAGGCAACTCTACAAGAGAAATTTTGACAGTGGCCTGCAG
GAGTACAAGAGCTTACAAGCAGAACTTGATGAGATCAATAAAGAGCTCTCTCGACTGGATAAAG
AGCTGGATGATTATAGAGAAGAAAGTGAAGAGTACATGGCTGCTGCTGATGAATACAATAGACT
GAAGCAAGTTAAGGGATCTGCGGATTACAAAAGTAAGAGGAATTATTGCAAGCAGTTGAAGAGC
AAATTGTCACACATCAAGAAGATGGTTGGAGATTATGATCGAAGGAAAACATAGGAGGCAGAGG
CCACCTTGTTTGAGAGATTAAGAAGTATCTGATCTGACATCTCTGCAGTGTTGTCAGGAGTCAA
AATGACACTGGACTCTGACCCAGGAGGCCAAACCTTTCTGGTCATTACGGAGATTTGGTAGCTT
TAATATCATCAGTATTGAAGCATTTTATAAATAGCTTTTGATAATCAACTGGTCTGAACACTCC
AAGGAAGGATTTTTGTTTGTCTATCTGTTTTGTTTGTTTTTTAGGGCTGCCCCCATGCCATATG
GAAGTTCCCAGGCTAGGGGTCTAAACTGAGCTACAGCTGCCGGCCTACGCCACAGCCACAGCAA
TGCCAGATCCTTCAACCCACTGAGCGGGGCCACGGATTGAACCTGCATCCTCATGGATGCTAGT
CGGGTTCGTTTCCACTGAGCCACAAGGGGAACTCCAAAGAAAGGATTTTATGCTTTAAACATTG
GTTCTTGTGTTAAGAACTCACTGTTGTTTAAAGTTTTTAAATCTTTAGGGACGGTCCGGGAGTG
AACTGTGAACTTTGACACTCTAGGCAATCAGGTCCTAATACCTAAAATGTACTCTTTGGGTCTC
CCAGAATTCGCCCTTCCGATAACTGTTCTCTCTCATCATTTCTCTTCAGATAAGGAAATTGGGC
CCCTGCAATAAAGTCTCTGAAGTGAAACTGCTTGTTTTCTAGCTTGCAGTTTTGGTTAAGTCTG
TTTTATGACTGCATGGATAAAGTCCCTGGCCTTTTCATATTTCAGCTACTACAGATAGTGCATT
CCACCAGGCCTCCTATTAATTTTTTTTCTGTGTATAAATGCTTAAGAGGTTTGTATTTCATGTT
ATCCTGGTAATAAAGATCACGTAAAAGTAACAGATGTGTGAAATTTGAAGATTGTAAATACATG
TTTACTTTTTTAAAAATCAAAGTTGAAACCTACTGGTTAGAATTTTGTTGTGTATTTTTAAATG
CTTTTTATCTTTTATGGTTTACATACTTCTTTTTAAACCAGCTAGGCTGTTTCATTATATCAAA
GTATCCAATTACATTTATAATTCAATTGTGACTTGAATTGTATCTTTGGGGAATGTTGGAGCTT
TGTACATATTTTATAATTATTAAACCTGGTGTTTCCTTTCCATAATATACATTTTTGACATCAC
TAGTCCTGTGGAAAACTGGAAAACTAAGCTATGGGAAACTACACTCAGGAGTTTTATCTGTTAT
TGTTTTAAACTACTTTGGGTGCTGTGCTAGTTGGTAGTTTCCTAAGTCCTTTGACTGATTTGTC
AGGAAACAGAATGCAAGACCCTAAAATGCCAAATTATTTCAAGTGGTGCTTTTAAATCTCGAAA
GTTTTTTGTTTTTAATTCAGATGTTTCCTGGTAATGTAAAATTAGCTGATAATCCTGGACATAT
AGCCCACCAAGTTGGTTGTGATGATCTCCTCAGTTTAGAACTCTTCTTTCCTTTTTTTTTTTTT
TAAGGGCTATGCCCGTGGCATATGGAAGTTCCCAGGTTAGGGGTCGAATTGGAGCTACGGCTGC
TGGCCTACACCACAGCTACAGCAACTTGGGATCCAAGCCGTGTCTGCAACCTACCCCACAGTTC
ACAGCAACGCCGGATCCTTAACCCACTGAGTGAGGCCAAGGATCGAACCTGCATCCTCATGGAT
GCTAGTCAAATTTGTTTCCGCTGAGCAGGAACTCCTAGAATTCTTTCTGAAAAAATGTTAAAGA
ATAATTTCAAATTTATCATTACTATACAATTTGGACATTTAAGTCTATAGATTTTAATATAGAA
GTCTGAATCGTTTTCCAAAGATAAACTTTTAAATAAGGTTTCCATTATAACAGATTTATTTCTT
CAAGTTGAAGAAATTTTTTGTTTTCTATGTGCCGCATATACTATAGAAAGTAATAAATAGTTTA
TGCTTTTTATGACTTTTGGATTCATACTAAATGGTAAGGACTCTTGAGCAACTGAATTTTTCTG
TGTTAAAATTTAAACTCTTTATTCTTGGAAATCAGCGTACTTTGTTTATGAAGACAAGTTTGCC
AGCGTTGTGACAAAACAAAACCATTCAGCAGAATGCAGAAAATTAAATAGGACGAGTTTGCATT
GTAAAATTGTGCCATAAAATTAGACTTTGAAAGTTTTTTAAAAAATCATTTTTCAAATGTGATA
TTTAACTCCAAAGACCGCTTCAGGAGCCAGGATCAGGATGTTTTTGTTGGAGTTGGCATTAACT
AATGAAATATAACTTTGAAAAACCACTCGGGCTATGTTCTCACCTGGAAAATAGAGGTTTAGAT
CGATTTCAGAGGTCTTTTACATCTCTGACCTTCTTTGGTTATGTTTGCATAATACTTCCTGCTC
TAAACCACTATTCCAAAGATTCTGTTGAAAATGCATGTGGTTCATTTGCTGAAGACTCACAGCA
TGAAGTGATTTCCTTACATGTGTATTAAACATAGATAACATCAATACTTTCATTTCTCTTTATC
TTGGAAAGTTTAAAAAAATACAGAAAAATAGGAACTTGTAAACCTACCACCCAGAAAGAACAAG
TGTTGATATTTTGTCATATATACTTTGTATTTTTGGAAATAAATTTAAGTCTGTAAGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001157119	(Get FASTA)	NCBI Sequence Viewer
	XP_005672578	(Get FASTA)	NCBI Sequence Viewer
	XP_005672579	(Get FASTA)	NCBI Sequence Viewer
	XP_005672580	(Get FASTA)	NCBI Sequence Viewer
	XP_005672581	(Get FASTA)	NCBI Sequence Viewer
	XP_005672582	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD00349	(Get FASTA)	NCBI Sequence Viewer
	CAZ64276	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_005672579 ⟸ XM_005672522
- Peptide Label:	isoform X1
- UniProtKB:	F1SK31 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSRPFESPPPYRPDEFKPNHYAPSNDIYGGETPIRPMLSQPAYSFYPEDEILHFYKWTSPPGV IRILSMLVIVMCIAIFACVASTLAWDRGYGTLIGGGMGYPYAGSGFGGYGSSYGYGYGYGYGYG GGYTDPRAAKGFFLAMAAFCFIAALVIFVTSVIRSEISRTRRYYLTVIIMSAILGVMVFIATIV YIMGVNPTAQASGSLYSSQIYALCNQFYTTAVTGLYVDQYLYHYCVVDPQEAIAIVLGFMVIVA FALMIFFAVKTRSKMYHYDKSNILWDKERIYDEQPPNVEEWVKNVSAGTQDMPPPLSDYAERVD SPMAYSSNGKVNEKRPYPESSYKSTPVPEVVQELPLMSPVEDLRQPHYSSSGNLEASSKRAPAK GRAGKSRRSEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQA ELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKK MVGDYDRRKT hide sequence

RefSeq Acc Id:	XP_005672578 ⟸ XM_005672521
- Peptide Label:	isoform X1
- UniProtKB:	F1SK31 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSRPFESPPPYRPDEFKPNHYAPSNDIYGGETPIRPMLSQPAYSFYPEDEILHFYKWTSPPGV IRILSMLVIVMCIAIFACVASTLAWDRGYGTLIGGGMGYPYAGSGFGGYGSSYGYGYGYGYGYG GGYTDPRAAKGFFLAMAAFCFIAALVIFVTSVIRSEISRTRRYYLTVIIMSAILGVMVFIATIV YIMGVNPTAQASGSLYSSQIYALCNQFYTTAVTGLYVDQYLYHYCVVDPQEAIAIVLGFMVIVA FALMIFFAVKTRSKMYHYDKSNILWDKERIYDEQPPNVEEWVKNVSAGTQDMPPPLSDYAERVD SPMAYSSNGKVNEKRPYPESSYKSTPVPEVVQELPLMSPVEDLRQPHYSSSGNLEASSKRAPAK GRAGKSRRSEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQA ELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKK MVGDYDRRKT hide sequence

RefSeq Acc Id:	XP_005672581 ⟸ XM_005672524
- Peptide Label:	isoform X1
- UniProtKB:	F1SK31 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSRPFESPPPYRPDEFKPNHYAPSNDIYGGETPIRPMLSQPAYSFYPEDEILHFYKWTSPPGV IRILSMLVIVMCIAIFACVASTLAWDRGYGTLIGGGMGYPYAGSGFGGYGSSYGYGYGYGYGYG GGYTDPRAAKGFFLAMAAFCFIAALVIFVTSVIRSEISRTRRYYLTVIIMSAILGVMVFIATIV YIMGVNPTAQASGSLYSSQIYALCNQFYTTAVTGLYVDQYLYHYCVVDPQEAIAIVLGFMVIVA FALMIFFAVKTRSKMYHYDKSNILWDKERIYDEQPPNVEEWVKNVSAGTQDMPPPLSDYAERVD SPMAYSSNGKVNEKRPYPESSYKSTPVPEVVQELPLMSPVEDLRQPHYSSSGNLEASSKRAPAK GRAGKSRRSEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQA ELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKK MVGDYDRRKT hide sequence

RefSeq Acc Id:

NP_001157119 ⟸ NM_001163647

- UniProtKB:

C5JA71 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSRPLESPPPYRPDEFKPNHYAPSNDIYGGETPIRPMLSQPAYSFYPEDEILHFYKWTSPPGV
IRILSMLVIVMCIAIFACVASTLAWDRGYGTLIGGGMGYPYAGSGFGGYGSSYGYGYGYGYGYG
GGYTDPRAAKGFFLAMAAFCFIAALVIFVTSVIRSEISRTRRYYLTVIIMSAILGVMVFIATIV
YIMGVNPTAQASGSLYSSQIYALCNQFYTTAVTGLYVDQYLYHYCVVDPQEAIAIVLGFMVIVA
FALMIFFAVKTRSKMYHYDKSNILWDKERIYDEQPPNVEEWVKNVSAGTQDMPPPLSDYAERVD
SPMAYSSNGKVNEKRPYPESSYKSTPVPEVVQELPLMSPVEDLRQPHYSSSGNLEASSKRAPAK
GRAGKSRRSEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQA
ELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKK
MVGDYDRRKT

hide sequence

RefSeq Acc Id:	XP_005672580 ⟸ XM_005672523
- Peptide Label:	isoform X1
- UniProtKB:	F1SK31 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSRPFESPPPYRPDEFKPNHYAPSNDIYGGETPIRPMLSQPAYSFYPEDEILHFYKWTSPPGV IRILSMLVIVMCIAIFACVASTLAWDRGYGTLIGGGMGYPYAGSGFGGYGSSYGYGYGYGYGYG GGYTDPRAAKGFFLAMAAFCFIAALVIFVTSVIRSEISRTRRYYLTVIIMSAILGVMVFIATIV YIMGVNPTAQASGSLYSSQIYALCNQFYTTAVTGLYVDQYLYHYCVVDPQEAIAIVLGFMVIVA FALMIFFAVKTRSKMYHYDKSNILWDKERIYDEQPPNVEEWVKNVSAGTQDMPPPLSDYAERVD SPMAYSSNGKVNEKRPYPESSYKSTPVPEVVQELPLMSPVEDLRQPHYSSSGNLEASSKRAPAK GRAGKSRRSEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQA ELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKK MVGDYDRRKT hide sequence

RefSeq Acc Id:	XP_005672582 ⟸ XM_005672525
- Peptide Label:	isoform X1
- UniProtKB:	F1SK31 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSRPFESPPPYRPDEFKPNHYAPSNDIYGGETPIRPMLSQPAYSFYPEDEILHFYKWTSPPGV IRILSMLVIVMCIAIFACVASTLAWDRGYGTLIGGGMGYPYAGSGFGGYGSSYGYGYGYGYGYG GGYTDPRAAKGFFLAMAAFCFIAALVIFVTSVIRSEISRTRRYYLTVIIMSAILGVMVFIATIV YIMGVNPTAQASGSLYSSQIYALCNQFYTTAVTGLYVDQYLYHYCVVDPQEAIAIVLGFMVIVA FALMIFFAVKTRSKMYHYDKSNILWDKERIYDEQPPNVEEWVKNVSAGTQDMPPPLSDYAERVD SPMAYSSNGKVNEKRPYPESSYKSTPVPEVVQELPLMSPVEDLRQPHYSSSGNLEASSKRAPAK GRAGKSRRSEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQA ELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKK MVGDYDRRKT hide sequence

RefSeq Acc Id:

ENSSSCP00000041435 ⟸ ENSSSCT00000060865

RefSeq Acc Id:

ENSSSCP00000044638 ⟸ ENSSSCT00000057617

Protein Domains

MARVEL Occludin_ELL

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000021514	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00070017114	UniProtKB/TrEMBL
Ensembl Protein	ENSSSCP00000041435	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCP00000044638	UniProtKB/TrEMBL
	ENSSSCP00070028181	UniProtKB/TrEMBL
	ENSSSCP00070028191	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000057617	UniProtKB/TrEMBL
	ENSSSCT00000060865	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCT00070033757	UniProtKB/TrEMBL
	ENSSSCT00070033768	UniProtKB/TrEMBL
InterPro	ELL/occludin	UniProtKB/TrEMBL
	Marvel	UniProtKB/TrEMBL
	Occludin	UniProtKB/TrEMBL
	Occludin_ELL	UniProtKB/TrEMBL
NCBI Gene	OCLN	ENTREZGENE
PANTHER	PTHR23288	UniProtKB/TrEMBL
	PTHR23288:SF4	UniProtKB/TrEMBL
Pfam	MARVEL	UniProtKB/TrEMBL
	Occludin_ELL	UniProtKB/TrEMBL
PIRSF	Occludin	UniProtKB/TrEMBL
PRINTS	OCCLUDIN	UniProtKB/TrEMBL
PROSITE	MARVEL	UniProtKB/TrEMBL
UniGene	Ssc.42509	ENTREZGENE
UniProt	A0A287AL69_PIG	UniProtKB/TrEMBL
	A0A4X1UHY5_PIG	UniProtKB/TrEMBL
	A0A4X1UHZ7_PIG	UniProtKB/TrEMBL
	C5JA71	ENTREZGENE
	F1SK31	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	I3LGZ9	UniProtKB/TrEMBL
VGNC ID	VGNC:91013	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)