PKDCC (protein kinase domain containing, cytoplasmic) - Rat Genome Database

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Gene: PKDCC (protein kinase domain containing, cytoplasmic) Sus scrofa
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Symbol: PKDCC
Name: protein kinase domain containing, cytoplasmic
RGD ID: 14020418
Description: ENCODES a protein that exhibits protein kinase activity (ortholog); INVOLVED IN bone mineralization (ortholog); limb morphogenesis (ortholog); multicellular organism growth (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); RHIZOMELIC LIMB SHORTENING WITH DYSMORPHIC FEATURES (ortholog); FOUND IN extracellular region (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: extracellular tyrosine-protein kinase PKDCC
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl398,258,460 - 98,268,557 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1398,258,456 - 98,268,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23104,399,317 - 104,410,926 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
PKDCC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl398,258,460 - 98,268,557 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1398,258,456 - 98,268,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23104,399,317 - 104,410,926 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PKDCC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl242,048,021 - 42,058,517 (+)EnsemblGRCh38hg38GRCh38
GRCh38242,048,021 - 42,058,517 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37242,275,161 - 42,285,657 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36242,129,257 - 42,139,144 (+)NCBINCBI36hg18NCBI36
Celera242,114,692 - 42,125,199 (+)NCBI
Cytogenetic Map2p21NCBI
HuRef241,976,661 - 42,020,247 (+)NCBIHuRef
CHM1_1242,204,788 - 42,215,229 (+)NCBICHM1_1
Pkdcc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391783,522,712 - 83,532,498 (+)NCBIGRCm39mm39
GRCm39 Ensembl1783,522,721 - 83,532,499 (+)Ensembl
GRCm381783,215,283 - 83,225,069 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1783,215,292 - 83,225,070 (+)EnsemblGRCm38mm10GRCm38
MGSCv371783,614,623 - 83,624,409 (+)NCBIGRCm37mm9NCBIm37
MGSCv361783,123,628 - 83,133,392 (+)NCBImm8
Celera1787,561,813 - 87,571,116 (+)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1752.25NCBI
Pkdcc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2611,455,686 - 11,465,002 (-)NCBI
Rnor_6.0 Ensembl66,427,657 - 6,436,974 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.066,427,657 - 6,436,974 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.066,384,829 - 6,394,146 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.466,554,313 - 6,563,630 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.166,553,108 - 6,563,623 (+)NCBI
Celera611,160,388 - 11,169,705 (-)NCBICelera
Cytogenetic Map6q12NCBI
Pkdcc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554419,462,530 - 9,471,446 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554419,462,530 - 9,471,446 (+)NCBIChiLan1.0ChiLan1.0
PKDCC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A42,999,423 - 43,009,337 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A42,146,153 - 42,156,652 (+)NCBIMhudiblu_PPA_v0panPan3
PKDCC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11733,659,352 - 33,669,237 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1733,659,272 - 33,668,892 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1733,430,046 - 33,439,952 (+)NCBI
ROS_Cfam_1.01734,426,469 - 34,436,390 (+)NCBI
UMICH_Zoey_3.11733,552,650 - 33,562,557 (+)NCBI
UNSW_CanFamBas_1.01733,614,371 - 33,624,301 (+)NCBI
UU_Cfam_GSD_1.01733,831,677 - 33,841,621 (+)NCBI
Pkdcc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629238,121,581 - 38,130,884 (-)NCBI
SpeTri2.0NW_0049365089,550,201 - 9,559,493 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKDCC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11465,203,757 - 65,214,386 (-)NCBI
ChlSab1.1 Ensembl1465,204,620 - 65,214,190 (-)Ensembl
Vero_WHO_p1.0NW_02366604546,688,090 - 46,698,587 (+)NCBI
Pkdcc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473823,759,382 - 23,768,743 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 10 4 3 5 22 2 3 1
Below cutoff 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000009270   ⟹   ENSSSCP00000009036
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl398,258,460 - 98,268,557 (-)Ensembl
RefSeq Acc Id: XM_021087583   ⟹   XP_020943242
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1398,258,456 - 98,268,539 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021087584   ⟹   XP_020943243
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1398,258,466 - 98,268,539 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020943242 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943243 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020943242   ⟸   XM_021087583
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020943243   ⟸   XM_021087584
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000009036   ⟸   ENSSSCT00000009270
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008468 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000009036 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009270 ENTREZGENE, UniProtKB/TrEMBL
InterPro FAM69_kinase_dom UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  PKDCC UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
NCBI Gene PKDCC ENTREZGENE
PANTHER PTHR46448 UniProtKB/TrEMBL
Pfam PIP49_C UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_DOM UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt F1S4U8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91475 ENTREZGENE