LZTR1 (leucine zipper like transcription regulator 1) - Rat Genome Database

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Gene: LZTR1 (leucine zipper like transcription regulator 1) Sus scrofa
Analyze
Symbol: LZTR1
Name: leucine zipper like transcription regulator 1
RGD ID: 14018156
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN negative regulation of Ras protein signal transduction (inferred); protein ubiquitination (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); bladder exstrophy (ortholog); FOUND IN endomembrane system (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: leucine-zipper-like transcriptional regulator 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,569,746 - 50,589,787 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,576,413 - 50,590,397 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,025,428 - 54,038,534 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LZTR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,569,746 - 50,589,787 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,576,413 - 50,590,397 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,025,428 - 54,038,534 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LZTR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2220,982,269 - 20,999,032 (+)EnsemblGRCh38hg38GRCh38
GRCh382220,982,297 - 20,999,032 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372221,336,586 - 21,353,321 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,666,558 - 19,683,326 (+)NCBINCBI36hg18NCBI36
Build 342219,661,209 - 19,677,879NCBI
Celera224,827,905 - 4,844,645 (+)NCBI
Cytogenetic Map22q11.21NCBI
HuRef224,604,854 - 4,621,598 (+)NCBIHuRef
CHM1_12221,336,755 - 21,353,527 (+)NCBICHM1_1
Lztr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,326,124 - 17,344,197 (+)NCBIGRCm39mm39
GRCm39 Ensembl1617,326,552 - 17,344,197 (+)Ensembl
GRCm381617,508,260 - 17,526,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,508,688 - 17,526,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv371617,509,064 - 17,526,423 (+)NCBIGRCm37mm9NCBIm37
MGSCv361617,422,534 - 17,439,893 (+)NCBImm8
Celera1618,082,040 - 18,099,435 (+)NCBICelera
Cytogenetic Map16A3NCBI
Lztr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21183,487,717 - 83,503,896 (-)NCBI
Rnor_6.0 Ensembl1187,381,899 - 87,397,498 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01187,381,638 - 87,397,849 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01190,432,972 - 90,449,143 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,479,494 - 85,495,053 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11185,520,301 - 85,542,781 (-)NCBI
Celera1182,256,659 - 82,272,218 (-)NCBICelera
Cytogenetic Map11q23NCBI
Lztr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544219,315,427 - 19,333,522 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544219,315,427 - 19,333,361 (-)NCBIChiLan1.0ChiLan1.0
LZTR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12219,695,348 - 19,713,007 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2219,695,228 - 19,713,007 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0223,206,019 - 3,223,050 (+)NCBIMhudiblu_PPA_v0panPan3
LZTR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,501,793 - 30,519,698 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,503,071 - 30,519,611 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,460,228 - 30,477,473 (-)NCBI
ROS_Cfam_1.02631,910,805 - 31,928,017 (-)NCBI
UMICH_Zoey_3.12629,956,683 - 29,973,831 (-)NCBI
UNSW_CanFamBas_1.02629,580,661 - 29,597,796 (-)NCBI
UU_Cfam_GSD_1.02630,669,630 - 30,686,843 (-)NCBI
Lztr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,230,562 - 140,248,621 (-)NCBI
SpeTri2.0NW_0049366192,505,300 - 2,523,500 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LZTR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,917,381 - 4,935,174 (+)NCBI
ChlSab1.1 Ensembl194,918,360 - 4,933,439 (+)Ensembl
Vero_WHO_p1.0NW_0236660852,034,445 - 2,052,891 (-)NCBI
Lztr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624945691,063 - 709,599 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000052091   ⟹   ENSSSCP00000055201
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,569,746 - 50,589,787 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000052616   ⟹   ENSSSCP00000037743
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,569,746 - 50,589,787 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000054172   ⟹   ENSSSCP00000036688
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,569,746 - 50,589,787 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000062345   ⟹   ENSSSCP00000043624
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,577,111 - 50,589,787 (+)Ensembl
RefSeq Acc Id: XM_003132997   ⟹   XP_003133045
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,576,413 - 50,590,397 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003133045 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003133045   ⟸   XM_003132997
- Sequence:
RefSeq Acc Id: ENSSSCP00000036688   ⟸   ENSSSCT00000054172
RefSeq Acc Id: ENSSSCP00000055201   ⟸   ENSSSCT00000052091
RefSeq Acc Id: ENSSSCP00000037743   ⟸   ENSSSCT00000052616
RefSeq Acc Id: ENSSSCP00000043624   ⟸   ENSSSCT00000062345
Protein Domains
BTB   Rieske


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010097 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070020109 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000036688 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000037743 UniProtKB/TrEMBL
  ENSSSCP00000043624 UniProtKB/TrEMBL
  ENSSSCP00000055201 UniProtKB/TrEMBL
  ENSSSCP00070033408 UniProtKB/TrEMBL
  ENSSSCP00070033434 UniProtKB/TrEMBL
  ENSSSCP00070033453 UniProtKB/TrEMBL
  ENSSSCP00070033511 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052091 UniProtKB/TrEMBL
  ENSSSCT00000052616 UniProtKB/TrEMBL
  ENSSSCT00000054172 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000062345 UniProtKB/TrEMBL
  ENSSSCT00070039883 UniProtKB/TrEMBL
  ENSSSCT00070039915 UniProtKB/TrEMBL
  ENSSSCT00070039938 UniProtKB/TrEMBL
  ENSSSCT00070040003 UniProtKB/TrEMBL
Gene3D-CATH 2.102.10.10 UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/TrEMBL
  3.30.390.30 UniProtKB/TrEMBL
  3.30.710.10 UniProtKB/TrEMBL
  3.50.50.60 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
  FAD/NAD-binding_dom UniProtKB/TrEMBL
  FAD/NAD-linked_Rdtase_dimer_sf UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  Kelch_2 UniProtKB/TrEMBL
  Reductase_C UniProtKB/TrEMBL
  Rieske_2Fe-2S UniProtKB/TrEMBL
  Rieske_2Fe-2S_sf UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
KEGG Report ssc:100525839 UniProtKB/TrEMBL
NCBI Gene LZTR1 ENTREZGENE
Pfam BTB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  Kelch_2 UniProtKB/TrEMBL
  Pyr_redox_2 UniProtKB/TrEMBL
  Reductase_C UniProtKB/TrEMBL
  Rieske UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  RIESKE UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
  SSF50022 UniProtKB/TrEMBL
  SSF51905 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
  SSF55424 UniProtKB/TrEMBL
UniProt A0A286ZYJ1_PIG UniProtKB/TrEMBL
  A0A287A1W1_PIG UniProtKB/TrEMBL
  A0A287AIB8_PIG UniProtKB/TrEMBL
  A0A287BFU1_PIG UniProtKB/TrEMBL
  A0A4X1UTN3_PIG UniProtKB/TrEMBL
  A0A4X1UXA2_PIG UniProtKB/TrEMBL
  A0A4X1UXC9_PIG UniProtKB/TrEMBL
  A0A4X1UXM0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89927 ENTREZGENE