STOML1 (stomatin like 1) - Rat Genome Database

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Gene: STOML1 (stomatin like 1) Sus scrofa
Analyze
Symbol: STOML1
Name: stomatin like 1
RGD ID: 14016370
Description: ENCODES a protein that exhibits ion channel inhibitor activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of acid-sensing ion channel activity (ortholog); SMAD protein signal transduction (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); schizophrenia (ortholog); FOUND IN cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: stomatin-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,452,117 - 59,462,615 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1759,448,500 - 59,461,208 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2764,073,619 - 64,083,029 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
STOML1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,452,117 - 59,462,615 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1759,448,500 - 59,461,208 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2764,073,619 - 64,083,029 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STOML1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1573,978,926 - 73,994,622 (-)EnsemblGRCh38hg38GRCh38
GRCh381573,978,926 - 73,994,636 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371574,271,267 - 74,286,963 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,062,613 - 72,071,688 (-)NCBINCBI36hg18NCBI36
Build 341572,062,613 - 72,071,688NCBI
Celera1551,152,879 - 51,161,955 (-)NCBI
Cytogenetic Map15q24.1NCBI
HuRef1551,107,393 - 51,118,798 (-)NCBIHuRef
CHM1_11574,393,520 - 74,404,924 (-)NCBICHM1_1
Stoml1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39958,160,443 - 58,169,807 (+)NCBIGRCm39mm39
GRCm39 Ensembl958,160,447 - 58,169,803 (+)Ensembl
GRCm38958,253,160 - 58,262,524 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,253,164 - 58,262,520 (+)EnsemblGRCm38mm10GRCm38
MGSCv37958,100,971 - 58,110,331 (+)NCBIGRCm37mm9NCBIm37
MGSCv36958,051,329 - 58,060,655 (+)NCBImm8
Celera955,487,432 - 55,496,724 (+)NCBICelera
Cytogenetic Map9BNCBI
Stoml1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2858,661,980 - 58,669,860 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl858,661,992 - 58,669,860 (+)Ensembl
Rnor_6.0863,037,135 - 63,045,024 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl863,036,976 - 63,045,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0862,813,188 - 62,821,072 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4862,052,528 - 62,059,673 (+)NCBIRGSC3.4rn4RGSC3.4
Celera858,124,540 - 58,132,408 (+)NCBICelera
Cytogenetic Map8q24NCBI
Stoml1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,693,864 - 3,701,291 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554503,694,197 - 3,701,812 (+)NCBIChiLan1.0ChiLan1.0
STOML1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11571,647,379 - 71,658,827 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1571,647,380 - 71,656,369 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01552,892,400 - 52,903,812 (-)NCBIMhudiblu_PPA_v0panPan3
STOML1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13037,221,013 - 37,232,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3037,221,732 - 37,229,941 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3037,156,400 - 37,167,646 (-)NCBI
ROS_Cfam_1.03037,427,995 - 37,439,240 (-)NCBI
UMICH_Zoey_3.13037,379,831 - 37,391,073 (-)NCBI
UNSW_CanFamBas_1.03037,405,777 - 37,416,979 (-)NCBI
UU_Cfam_GSD_1.03037,662,015 - 37,673,278 (-)NCBI
Stoml1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,275,597 - 115,284,980 (-)NCBI
SpeTri2.0NW_00493647133,123,662 - 33,133,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STOML1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,494,993 - 9,506,520 (+)NCBI
ChlSab1.1 Ensembl269,497,339 - 9,508,548 (+)Ensembl
Vero_WHO_p1.0NW_023666048132,108,846 - 132,120,249 (-)NCBI
Stoml1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624781494,525 - 509,747 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1
Low 10 4 3 5 2 21 2 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000002142   ⟹   ENSSSCP00000002092
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl759,452,117 - 59,461,204 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000069839   ⟹   ENSSSCP00000060843
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl759,453,533 - 59,461,205 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000082589   ⟹   ENSSSCP00000069099
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl759,452,176 - 59,461,203 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087775   ⟹   ENSSSCP00000069430
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl759,452,117 - 59,462,615 (+)Ensembl
RefSeq Acc Id: XM_001928390   ⟹   XP_001928425
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,452,175 - 59,461,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005666167   ⟹   XP_005666224
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,452,175 - 59,461,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013978100   ⟹   XP_013833554
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,452,187 - 59,461,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099067   ⟹   XP_020954726
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,448,500 - 59,461,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099068   ⟹   XP_020954727
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,450,296 - 59,461,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099069   ⟹   XP_020954728
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,450,296 - 59,461,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099070   ⟹   XP_020954729
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,452,470 - 59,461,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099071   ⟹   XP_020954730
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,452,221 - 59,461,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099072   ⟹   XP_020954731
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,448,500 - 59,461,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099073   ⟹   XP_020954732
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,455,367 - 59,461,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099074   ⟹   XP_020954733
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,448,501 - 59,461,208 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020954726   ⟸   XM_021099067
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020954731   ⟸   XM_021099072
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020954733   ⟸   XM_021099074
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020954727   ⟸   XM_021099068
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020954728   ⟸   XM_021099069
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_001928425   ⟸   XM_001928390
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005666224   ⟸   XM_005666167
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013833554   ⟸   XM_013978100
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020954730   ⟸   XM_021099071
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020954729   ⟸   XM_021099070
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020954732   ⟸   XM_021099073
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSSSCP00000002092   ⟸   ENSSSCT00000002142
RefSeq Acc Id: ENSSSCP00000060843   ⟸   ENSSSCT00000069839
RefSeq Acc Id: ENSSSCP00000069430   ⟸   ENSSSCT00000087775
RefSeq Acc Id: ENSSSCP00000069099   ⟸   ENSSSCT00000082589
Protein Domains
PHB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001913 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000002092 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000060843 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000069099 UniProtKB/TrEMBL
  ENSSSCP00000069430 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002142 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000069839 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000082589 UniProtKB/TrEMBL
  ENSSSCT00000087775 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1050.10 UniProtKB/TrEMBL
InterPro Band-7_stomatin-like UniProtKB/TrEMBL
  Band_7 UniProtKB/TrEMBL
  Band_7/SPFH_dom_sf UniProtKB/TrEMBL
  SCP2_sterol-bd_dom UniProtKB/TrEMBL
  SCP2_sterol-bd_dom_sf UniProtKB/TrEMBL
  Stomatin_fam UniProtKB/TrEMBL
NCBI Gene STOML1 ENTREZGENE
PANTHER PTHR10264 UniProtKB/TrEMBL
Pfam Band_7 UniProtKB/TrEMBL
  SCP2 UniProtKB/TrEMBL
PRINTS STOMATIN UniProtKB/TrEMBL
SMART PHB UniProtKB/TrEMBL
Superfamily-SCOP SSF117892 UniProtKB/TrEMBL
  SSF55718 UniProtKB/TrEMBL
UniProt A0A5G2Q983_PIG UniProtKB/TrEMBL
  A0A5G2QVW9_PIG UniProtKB/TrEMBL
  A0A5G2R5I1_PIG UniProtKB/TrEMBL
  F1SID0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93566 ENTREZGENE